R, ggplot — customize my barplot - r

Question

This is my datastructure:
Accession Source Name NucSource Order color Counts Normalized
1 Str1 Our Str1 ch 1 #1C9099 66827 2.318683e-01
2 Str1_plasmid Our Str1 pl 2 #1C9099 26 9.021169e-05
3 Str2 Our Str2 ch 3 #1C9099 288211 1.000000e+00
4 Str2_plasmid Our Str2 pl 4 #1C9099 71858 2.493243e-01
5 Str3 Our Str3 ch 5 #1C9099 40600 1.408690e-01
6 Str3_plasmid Our Str3 pl 6 #1C9099 25266 8.766494e-02
7 Str4 NCBI Str4 ch 7 #A6BDDB 21339 7.403951e-02
8 Str5 NCBI Str5 ch 8 #A6BDDB 37776 1.310706e-01
9 Str6 NCBI Str6 ch 9 #A6BDDB 3596 1.247697e-02
10 Str7 NCBI Str7 ch 10 #A6BDDB 5384 1.868076e-02
11 Str7_plasmid NCBI Str7 pl 11 #A6BDDB 40903 1.419203e-01
12 Str8 NCBI Str8 ch 12 #A6BDDB 8948 3.104670e-02
13 Str9 NCBI Str9 ch 13 #A6BDDB 16557 5.744750e-02
14 Str9_plasmid NCBI Str9 pl 14 #A6BDDB 3738 1.296966e-02
15 Str10 NCBI Str10 ch 15 #A6BDDB 10067 3.492927e-02
16 Str11 NCBI Str11 ch 16 #A6BDDB 7306 2.534948e-02
17 Str12 NCBI Str12 ch 17 #A6BDDB 10313 3.578281e-02
I run the following code on it:
p<-ggplot(data=myData, aes(x=Name, y=Normalized, fill=Source)) +
theme_few() +
xlab("Strain") + ylab("Normalized counts") +
geom_bar(stat="identity", aes(fill=myData$Source), colour="black", position="dodge") +
theme(axis.text.x = element_text(angle = 90, vjust = 0.4)) +
geom_text(aes(label=myData$NucSource), vjust=-0.5) +
theme(legend.position="right") +
scale_fill_manual(values=as.character(color.convert$color)[2:3])
print(p)
And this is the result:
What I would like to have now, is that for examples like "Str1" where I have "chr" and "pl" the two bars should be horizontally next to each other (Also for "Str2", "Str3", "Str7", "Str8"). But for cases like "Str4" where I have only "ch" there should be only one bar.
So the bars should not be on top of each other but horizontally arranged.
EDIT -- dput(head(myData, 20)):
structure(list(Accession = structure(c(16L, 17L, 12L, 13L, 14L, 15L,
1L, 2L, 3L, 4L, 5L, 6L, 7L, 8L, 9L, 10L, 11L), .Label = c("CP000517",
"CP002081", "CP002427", "CP002429", "CP002430_plasmid", "CP003799",
"CP009907", "CP009908_plasmid", "CP011386", "CP012381", "CP016827",
"FAM22155", "FAM22155_plasmid", "FAM8105", "FAM8105_plasmid",
"FAM8627", "FAM8627_plasmid"), class = "factor"), Source =
structure(c(2L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L ), .Label = c("NCBI", "Our"), class = "factor"), Name =
structure(c(1L, 1L, 2L, 2L, 3L, 3L, 4L, 5L, 6L, 7L, 7L, 8L, 9L, 9L,
10L, 11L, 12L), .Label = c("FAM8627", "FAM22155", "FAM8105", "DPC
4571", "CNRZ32", "H9", "H10", "R0052", "KLDS1.8701", "MB2-1",
"CAUH18", "D76"), class = "factor"), NucSource = structure(c(1L, 2L,
1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L), .Label =
c("ch", "pl"), class = "factor"), Order = 1:17, color =
structure(c(1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
2L, 2L, 2L ), .Label = c("#1C9099", "#A6BDDB", "#ECE2F0"), class =
"factor"),
Counts = c(66827L, 26L, 288211L, 71858L, 40600L, 25266L,
21339L, 37776L, 3596L, 5384L, 40903L, 8948L, 16557L, 3738L,
10067L, 7306L, 10313L), Normalized = c(0.231868318697066,
9.02116851889761e-05, 1, 0.249324279781133, 0.140869016102786,
0.0876649399224873, 0.0740395057787524, 0.131070639219183,
0.0124769699976753, 0.0186807581945172, 0.141920329203257,
0.0310466984258061, 0.0574474950643799, 0.0129696645860151,
0.0349292705691316, 0.0253494835381023, 0.0357828118982273
)), .Names = c("Accession", "Source", "Name", "NucSource", "Order", "color", "Counts", "Normalized"), row.names = c(NA, 17L),
class = "data.frame")

Answer 1

You need to dodge on a different column than fill:
ggplot(data=myData, aes(x = Name, y = Normalized, dodge = NucSource, fill = Source)) +
geom_text(aes(label = NucSource), vjust = -0.5) +
geom_col(colour="black", position="dodge") +
labs(x = "Strain", y = "Normalized counts") +
theme_bw() +
theme(axis.text.x = element_text(angle = 90, vjust = 0.4),
legend.position = "right")
PS: I changed some bits, because I was not sure which theme or extra packages you are using.