I have installed R 3.1. and RStudio 1.0.44 in BunsenLabs (Debian Jessie)
and I want to install the Quandl package.
In R console I write:
install.packages("Quandl")
and the output is:
ERROR: configuration failed for package ‘openssl’
* removing
ERROR: dependency ‘openssl’ is not available for package ‘httr’
* removing
ERROR: dependency ‘httr’ is not available for package ‘Quandl’
* removing
Warning in install.packages :
installation of package ‘Quandl’ had non-zero exit status
library(Quandl)
Error in library(Quandl) : there is no package called ‘Quandl’
Thanks,
RTA
Solution, write in linux terminal:
sudo apt-get install r-cran-openssl
Thanks
Related
I am struggling to install keras on my Rstudio version 2021.09.2 Build 382 (R version 3.6.0 (2019-04-26)) on Linux Centos 7. I am having this error message:
ERROR: compilation failed for package ‘RcppTOML’
* removing ‘/usr/lib64/R/library/RcppTOML’
ERROR: dependency ‘RcppTOML’ is not available for package ‘reticulate’
* removing ‘/usr/lib64/R/library/reticulate’
ERROR: dependency ‘reticulate’ is not available for package ‘tfautograph’
* removing ‘/usr/lib64/R/library/tfautograph’
ERROR: dependency ‘reticulate’ is not available for package ‘tfruns’
* removing ‘/usr/lib64/R/library/tfruns’
ERROR: dependencies ‘reticulate’, ‘tfruns’, ‘tfautograph’ are not available for package ‘tensorflow’
* removing ‘/usr/lib64/R/library/tensorflow’
ERROR: dependencies ‘reticulate’, ‘tensorflow’, ‘tfruns’ are not available for package ‘keras’
* removing ‘/usr/lib64/R/library/keras’
I tried to install manually directly from the tar, but I still have the same error.
1: In install.packages("keras") :
installation of package ‘RcppTOML’ had non-zero exit status
2: In install.packages("keras") :
installation of package ‘reticulate’ had non-zero exit status
3: In install.packages("keras") :
installation of package ‘tfautograph’ had non-zero exit status
4: In install.packages("keras") :
installation of package ‘tfruns’ had non-zero exit status
5: In install.packages("keras") :
installation of package ‘tensorflow’ had non-zero exit status
6: In install.packages("keras") :
installation of package ‘keras’ had non-zero exit status
Any idea how to solve it?
Thanks.
I finally understood, there is a bug on CentOS 7: RcppTOML fails to compile with g++ 4.8.5 (20150623), but installs with g++ 5.3.1 (20160406) from scl-devtoolset-4.
sudo yum install centos-release-scl
sudo yum install devtoolset-7-gcc*
scl enable devtoolset-7 bash
These lines fixed the issue
As described in the comments the older version of RcppTOML also works; This is a lighter stack then the accepted answer.
install.packages("devtools")
require(devtools)
install_version("RcppTOML", version = "0.1.3", repos = "http://cran.us.r-project.org")
To install an older version the easiest way is to use devtools.
hi i am trying to install package for experiment designs like this
install.packages("daewr", dependencies = T)
but it returns the following
configure: error: GNU MP not found, or not 4.1.4 or up, see http://gmplib.org
ERROR: configuration failed for package ‘gmp’
* removing ‘/home/yeferson/R/x86_64-pc-linux-gnu-library/4.0/gmp’
Warning in install.packages :
installation of package ‘gmp’ had non-zero exit status
ERROR: dependency ‘gmp’ is not available for package ‘partitions’
* removing ‘/home/yeferson/R/x86_64-pc-linux-gnu-library/4.0/partitions’
Warning in install.packages :
installation of package ‘partitions’ had non-zero exit status
ERROR: dependency ‘partitions’ is not available for package ‘DoE.base’
* removing ‘/home/yeferson/R/x86_64-pc-linux-gnu-library/4.0/DoE.base’
Warning in install.packages :
installation of package ‘DoE.base’ had non-zero exit status
ERROR: dependency ‘DoE.base’ is not available for package ‘FrF2’
* removing ‘/home/yeferson/R/x86_64-pc-linux-gnu-library/4.0/FrF2’
Warning in install.packages :
installation of package ‘FrF2’ had non-zero exit status
ERROR: dependency ‘FrF2’ is not available for package ‘daewr’
* removing ‘/home/yeferson/R/x86_64-pc-linux-gnu-library/4.0/daewr’
Warning in install.packages :
installation of package ‘daewr’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpB1bSe0/downloaded_packages’
so i decided to download the file from https://cran.r-project.org/web/packages/daewr/index.html
after trying to install it returns me
also installing the dependencies ‘gmp’, ‘partitions’, ‘DoE.base’, ‘FrF2.catlg128’
I try to install the first one but it asks for a Bessel package and it still gives me problems
I solved it by installing dependency one by one, many answer you install the dependencies but they do not say how I will explain them for the new ones in linux and in R to install the daerw package with the aforementioned problems, install the following in the linux console
sudo apt-get install libgsl-dev
with that install libraries now I can open R and install
install.packages('gsl')
then I opened the linux console again and installed
sudo apt-get install libgmp-dev
I go back to R and install
install.packages("gmp", dependencies = T)
now I can install the package without problems
install.packages("daewr", dependencies = T)
library(daewr)
I hope that any comment is welcome.
I am attempting to install the R package "codebook" on OSX. I receive the following error message. I receive similar error messages when I try to independently install these dependencies. Is there a way that I install via the terminal or otherwise install these dependencies?
My apologies if this is not enough information in order to provide guidance. Please let me know and I would be happy to provide additional context. I am using RStudio Version 1.0.136
Thank you
ERROR: compilation failed for package ‘RcppEigen’
installation of package ‘RcppEigen’ had non-zero exit status
ERROR: dependencies ‘lavaan’, ‘OpenMx’, ‘semTools’ are not available for package ‘MBESS’
installation of package ‘MBESS’ had non-zero exit status
ERROR: dependency ‘igraph’ is not available for package ‘DiagrammeR’
installation of package ‘DiagrammeR’ had non-zero exit status
ERROR: dependency ‘RcppEigen’ is not available for package ‘lme4’
installation of package ‘lme4’ had non-zero exit status
ERROR: dependency ‘DiagrammeR’ is not available for package ‘data.tree’
installation of package ‘data.tree’ had non-zero exit status
ERROR: dependencies ‘car’, ‘data.tree’, ‘DiagrammeR’, ‘lavaan’, ‘lme4’, ‘MBESS’ are not
available for package ‘userfriendlyscience’
* removing ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/userfriendlyscience’
Warning in install.packages :
installation of package ‘userfriendlyscience’ had non-zero exit status
ERROR: dependency ‘userfriendlyscience’ is not available for package ‘codebook’
* removing ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/codebook’
I'm trying to install the 'agricolae' package on R, but I get an error saying
configure: error: libproj not found in standard or given locations.
ERROR: configuration failed for package ‘sf’
* removing ‘/R/x86_64-pc-linux-gnu-library/3.6/sf’
Warning in install.packages :
installation of package ‘sf’ had non-zero exit status
ERROR: dependency ‘sf’ is not available for package ‘spdep’
* removing ‘/R/x86_64-pc-linux-gnu-library/3.6/spdep’
Warning in install.packages :
installation of package ‘spdep’ had non-zero exit status
ERROR: dependency ‘spdep’ is not available for package ‘agricolae’
* removing ‘/R/x86_64-pc-linux-gnu-library/3.6/agricolae’
Warning in install.packages :
installation of package ‘agricolae’ had non-zero exit status
I recently upgraded to Ubuntu 18.04.2 and R version 3.6.0 (2019-04-26) -- "Planting of a Tree" and that's when the problems started.
When I do
$ sudo apt-get install -y libproj-dev
I get:
libproj-dev is already the newest version (5.2.0-1~bionic0).
The error says that package 'sf' is not available for dependency 'spdep'. So you should be attempting to install pkg 'sf'. (I'm on the same OS as you and pkg:agricolae installed without problem just now. I have a more complete set of spatial R and system packages than you do.)
Edit: There have been reports that it was necessary in addressing this problem to create an environment link to the location of your libraries:
$ export LD_LIBRARY_PATH=/lib:/usr/lib:/usr/local/lib
(From: https://stat.ethz.ch/pipermail/r-sig-geo/2018-August/026740.html which in turn linked to https://gis.stackexchange.com/questions/157059/repairing-broken-gdal-and-proj-4-on-ubuntu, which has so further debugging options mentioned.)
I am using R 3.2.2 on a UNIX server (this is installed to my HOME).
Any package that I try to install returns an error message like this:
install.packages('knitr')
Warning: unable to access index for repository
https://cran.rstudio.com/src/contrib
Warning message:
package ‘knitr’ is not available (for R version 3.2.2)
I've also tried downloading the package source and installing manually, but that doesn't work:
install.packages('/home/baker/knitr_1.11.tar.gz',repos= NULL,type='source')
ERROR: dependencies ‘evaluate’, ‘digest’, ‘formatR’, ‘highr’, ‘markdown’, ‘stringr’, ‘yaml’ are not available for package ‘knitr’
* removing ‘/home/baker/R/lib64/R/library/knitr’
Warning message:
In install.packages("/home/baker/knitr_1.11.tar.gz", repos = NULL, :
installation of package ‘/home/baker/knitr_1.11.tar.gz’ had non-zero exit status
This is obviously a super frustrating problem...any ideas? I'm at a total loss.