i have a ubuntu machine that hosts a docker container.
and in the docker container i am running a web service which must validate
the user's password with the docker host's /etc/password.
my view is to ssh into docker host from the docker container.
so when i run command ssh in the docker container its saying ssh not found.
so,basically ssh is not installed in the container.
how can i install ssh in the container.
is there any way to accomplish this scenario?.
Well, as part of the image file you'll simply have to install openssh-server:
sudo apt-get install openssh-server
The problem then is that traditionally, a running docker container will only run a single command. You can get around this problem by using something like supervisord. There's an example in the docker docs: https://docs.docker.com/engine/admin/using_supervisord/
Your dockerfile might look like this:
FROM ubuntu:16.04
MAINTAINER examples#docker.com
RUN apt-get update && apt-get install -y openssh-server apache2 supervisor
RUN mkdir -p /var/lock/apache2 /var/run/apache2 /var/run/sshd /var/log/supervisor
COPY supervisord.conf /etc/supervisor/conf.d/supervisord.conf
EXPOSE 22 80
CMD ["/usr/bin/supervisord"]
Your supervisord.conf might look something like this:
[supervisord]
nodaemon=true
[program:sshd]
command=/usr/sbin/sshd -D
[program:apache2]
command=/bin/bash -c "source /etc/apache2/envvars && exec /usr/sbin/apache2 -DFOREGROUND"
Related
I'm trying to put my shiny app in docker container. My shiny app works totally fine on my local computer. But after dockerize my shiny app, I always have error message on my localhost like The application failed to start. The application exited during initialization..
I have no idea why that happens. I'm new to docker. How can I find the error logs when I run the docker image? I need the log to know what goes wrong.
Here is my dockfile:
# Install R version 3.6
FROM r-base:3.6.0
# Install Ubuntu packages
RUN apt-get update && apt-get install -y \
sudo \
gdebi-core \
pandoc \
pandoc-citeproc \
libcurl4-gnutls-dev \
libcairo2-dev/unstable \
libxt-dev \
libssl-dev
# Download and install ShinyServer (latest version)
RUN wget --no-verbose https://s3.amazonaws.com/rstudio-shiny-server-os-build/ubuntu-12.04/x86_64/VERSION -O "version.txt" && \
VERSION=$(cat version.txt) && \
wget --no-verbose "https://s3.amazonaws.com/rstudio-shiny-server-os-build/ubuntu-12.04/x86_64/shiny-server-$VERSION-amd64.deb" -O ss-latest.deb && \
gdebi -n ss-latest.deb && \
rm -f version.txt ss-latest.deb
# Install R packages that are required
# TODO: add further package if you need!
RUN R -e "install.packages(c( 'tidyverse', 'ggplot2','shiny','shinydashboard', 'DT', 'plotly', 'RColorBrewer'), repos='http://cran.rstudio.com/')"
# Copy configuration files into the Docker image
COPY shiny-server.conf /etc/shiny-server/shiny-server.conf
COPY /app /srv/shiny-server/
# Make the ShinyApp available at port 80
EXPOSE 80
# Copy further configuration files into the Docker image
COPY shiny-server.sh /usr/bin/shiny-server.sh
CMD ["/usr/bin/shiny-server.sh"]
I built image and ran like below:
docker build -t myshinyapp .
docker run -p 80:80 myshinyapp
Usually the logs for any (live or dead) container can be found by just using:
docker logs full-container-name
or
docker logs CONTAINERID
(replacing the actual ID of your container)
As first said, this usually works as well even for stopped (not still removed) containers, which you can list with:
docker container ls -a
or just
docker ps -a
However, sometimes you won't even have a log, since the container was never created at all (which I think, by experience, fits more to your case)
And it can be happening simply because the docker engine is unable to allocate all of the resources that your service definition is requiring to have available.
The application failed to start. The application exited during initialization
is usually reflect of your docker engine being unable to get the required resources.
And the most common case for that, is just as simple as your host ports:
If you have another service (being dockerized or not) using (for example) that port that you want to use for your service (in your case, port 80) then Docker would just be unable to start your container.
So... in short... the easiest fix for that situation (and your first try whenever you face this kind of issues) is just to bind any other port from your host (say: 8080), to that 80 port that your service will be listening to internally (inside your container):
docker run -p 8080:80 myshinyapp
The same principle applies to unallocatable volumes (e.g.: trying to bind a volume as read-only that doesn't actually exist in the host)
As an aside comment/trick:
Since you're not setting a name for your container, you will need to use the container id instead when looking for its logs.
But instead of typing (or copy-pasting) the full container id (usually something like: 1283c66babea or even larger) you can just type in a few first digits instead, and it will still work as expected:
docker logs 1283c6 or docker logs 1283 or even docker logs 128
(of course... as long as you don't have any other 128***** container)
I will run JupyterHub in a sub domain. Here is the Dockerfile, jupyterhub_config.py, .gitlab-ci.yml.
My first question is how to configure the jupyter_config.py. How can I load the jupyterhub_config.py on the build in the container?
How do I start Jupyterhub in the .gitlab-ci.yml for tests and how do I copy the application in the sub domain? I wrote a README.md. I need a little help for the JupyterHub. If all works fine, I will write a complete HOWTO Install JupyterHub on a local machine and in a sub domain by a provider.
FROM continuumio/miniconda3
# Updating packages
RUN apt-get update -y \
&& apt-get install -y --no-install-recommends \
git \
nano \
unzip \
&& apt-get clean \
&& rm -rf /var/lib/apt/lists/*
# Install conda and Jupyter
RUN conda update -y conda
RUN conda install -c conda-forge jupyter_nbextensions_configurator \
jupyterhub \
jupyterlab \
matplotlib \
pandas \
scipy
# Setup application
EXPOSE 8000
CMD ["jupyterhub", "--ip='*'", "--port=8000", "--no-browser", "--allow-root"]
The .gitlab-ci.yml
image: docker:latest
variables:
CONTAINER_IMAGE: registry.gitlab.com/joklein
DOCKER_IMAGE: jupyterhub
TAG: 0.1.0
services:
- docker:dind
stages:
- build
- test
- release
- deploy
before_script:
- echo "$GITLAB_PASSWORD" | docker login registry.gitlab.com --username $GITLAB_USER --password-stdin
build:
stage: build
script:
- docker build -t $CONTAINER_IMAGE/$DOCKER_IMAGE .
- docker push $CONTAINER_IMAGE/$DOCKER_IMAGE
test:
stage: test
script:
- docker pull $CONTAINER_IMAGE/$DOCKER_IMAGE
# - docker run $CONTAINER_IMAGE/$DOCKER_IMAGE -dt -p 8000:8000 --name $DOCKER_IMAGE
release:
stage: release
script:
- docker pull $CONTAINER_IMAGE/$DOCKER_IMAGE
- docker tag $CONTAINER_IMAGE/$DOCKER_IMAGE:latest $CONTAINER_IMAGE/$DOCKER_IMAGE:$TAG
- docker push $CONTAINER_IMAGE/$DOCKER_IMAGE:$TAG
only:
- master
deploy:
stage: deploy
image: alpine:latest
before_script:
- apk update && apk add git openssh-client rsync
script:
- mkdir .public
- cp -r * .public
- mv .public public
- mkdir "${HOME}/.ssh"
- echo "${SSH_HOST_KEY}" > "${HOME}/.ssh/known_hosts"
- echo "${SSH_PRIVATE_KEY}" > "${HOME}/.ssh/id_rsa"
- chmod 700 "${HOME}/.ssh/id_rsa"
- rsync -hrvz --delete --exclude=_ public/ user#example.com:www/jupyter/
only:
- master
The jupyterhub_config.py
c = get_config()
# Letsencrypt (https://letsencrypt.org/) to obtain a free, trusted SSL
# certificate.
c.JupyterHub.ssl_key = '/etc/letsencrypt/live/example.com/privkey.pem'
c.JupyterHub.ssl_cert = '/etc/letsencrypt/live/example.com/fullchain.pem'
c.JupyterHub.port = 443
#
# Change from JupyterHub to JupyterLab
c.Spawner.default_url = '/lab'
c.Spawner.debug = True
#
# # Specify users and admin
c.Authenticator.whitelist = {"systemuser"}
c.Authenticator.admin_users = {"systemuser"}
Docker base image of JupyterHub and JupyterLab
JupyterHub is a multi-user server for Jupyter notebooks. JupyterLab is the
next-generation web-based user interface for the Jupyter Project. This
JupyterHub is a Docker base image for JupyterHub and JupyterLab
that works as a stand-alone application and in a (sub) domain.
Images derived from this image can either run as a stand-alone server, or
function as a volume image for your server. You can also use them in a CI/CD
system such as GitLab CI to build your content prior to bundling it into a
standalone server container.
Building your JupyterHub image
Based on this structure, you can easily build an image for your needs. There are two options for using the image you generated:
as a stand-alone image
as a volume image for your webserver
The simplest way to build your own image is to use a Dockerfile. This is only an example. If you need more software packages you can install them with this
Dockerfile and conda.
Build the container
docker build -t juypterhub .
Your JupyterHub with JupyterLab is automatically generated during this build.
Run the container
docker run -p 8000:8000 -d --name jupyterhub jupyterhub jupyterhub
-p is used to map your local port 8000 to the container port 8000
-d is used to run the container in background. JupyterHub will just write
logs so no need to output them in your terminal unless you want to troubleshoot a server error.
-- name jupyterhub names your container jupyterhub
jupyterhub the image
jupyterhub is the last command used to start the jupyterhub server
and your JupyterHub with Jupyterlab is now available of http://localhost:8000.
Start / Stop JupyterHub
docker start / stop juyterhub
Configure JupyterHub
Let's encrypt certificates for JupyterHub
To enable HTTPS on your website, you need to get a certificate (a type of file) from a Certificate Authority (CA). Let’s Encrypt is a CA. In order to get a certificate for your website’s domain from Let’s Encrypt, you have to
demonstrate control over the domain. With Let’s Encrypt, you do this using
software that uses the ACME protocol, which typically runs on your web host.
Change to zerossl.com and generate a certificate for your domain. As the
result you get four files, domain-key.txt, domain-crt.txt, domain-csr.txt, account-key.txt. This files uses base 64, which is readable in
ASCII, not binary format. The certificates are already in PEM format. Just
change the extension to *.pem.
For JupyterHub only the files domain-key.txt and domain-crt are needed.
cp domain-crt.txt fullchain.pem
cp domain-key.txt privkey.pem
Add a System user in the container
By default JupyterHub searches for users on the server. In order to be able to
log in to our new JupyterHub server we need to connect to the JupyterHub docker
container and create a new system user with a password.
docker exec -it jupyterhub bash
useradd --create-home systemuser
passwd systemuser
exit
The command docker exec -it jupyterhub bash will spawn a root shell in your
docker container. You can use the root shell to create system users in the
container. These accounts will be used for authentication in JupyterHub's
default configuration.
The first command useradd creates a new user named systemuser. The second will
ask you for a password.
The all process might be simpler with GitLab 12.0 (June 2019), and its
Git integration for JupyterHub
Deploying JupyterHub via GitLab’s Kubernetes integration provides an easy way to get started with Jupyter notebooks, which can be used to create and share documents that contain live code, visualizations, and even runbooks.
Starting with GitLab 12.0, JupyterLab’s Git extension is automatically provisioned and configured when installing JupyterHub onto your Kubernetes cluster.
This integration enables full version control of your notebooks as well as issuance of Git commands within Jupyter. Git commands can be issued via the Git tab on the left panel or via Jupyter’s command line prompt.
See documentation and gitlab-ce issue 47138.
jupyterhub --generate-config
This is what on the documentation
It created a config.py file in /srv/jupyterhub
I have the following docker file.
FROM ubuntu
RUN apt-get update
EXPOSE 9000:80
# Install nginx
RUN apt-get install -y nginx
# Install Curl
RUN apt-get -qq update
RUN apt-get -qq -y install curl
ENTRYPOINT service nginx start
When I try to run the following commands in a shell script, the docker image is created
and container is started, however, when the shell script exits, the docker container is stopped.
How can I keep the docker container running after the shell script exits ? The idea is to have a running container with nginx running on port 80 that can be accessed from host using port 9000.
Don't run nginx as a background service. Launch it in the foreground as the nginx container on hub.docker.com does:
CMD ["nginx", "-g", "daemon off;"]
With containers, when pid 1 dies, your container dies. It's identical to when you kill pid 1 (init) on any Linux machine.
I have a docker file called quasar.dockerfile. I built the docker file and everything loaded successfully.
#quasar.dockerfile
FROM java:8
WORKDIR /app
ADD docker/quasar-config.json quasar-config.json
RUN apt-get update && \
apt-get install -y wget && \
wget https://github.com/quasar-analytics/quasar/releases/download/v2.3.3-SNAPSHOT-2121-web/web_2.11-2.3.3-SNAPSHOT-one-jar.jar
EXPOSE 8080
CMD java -jar web_2.11-2.2.3-SNAPSHOT-one-jar.jar -c /app/quasar-config.json
I then tried running the docker and I get this error saying that I am unable to access the jarfile.
[test]$ docker build -f docker/quasar.dockerfile -t quasar_fdw_test/quasar .
Sending build context to Docker daemon 1.851 MB
Successfully built a7d4bc6c906f
[test]$ docker run -d --name quasar_fdw_test-quasar --link quasar_fdw_test-mongodb:mongodb quasar_fdw_test/quasar
6af2f58bf446560507bdf4a2db8ba138de9ed94a408492144e7fdf6c1fe05118
[test]$ docker ps -l
CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
6af2f58bf446 quasar_fdw_test/quasar "/bin/sh -c 'java -ja" 5 seconds ago Exited (1) 4 seconds ago quasar_fdw_test- quasar
[test]$ docker logs 6af2f58bf446
Error: Unable to access jarfile web_2.11-2.2.3-SNAPSHOT-one-jar.jar
How come the process keeps getting killed? Seems like it has to do with being unable to run the jarfile but the build needed to access that file and happened successfully. Is this a linking issue?
Try to use full path on Dockerfile
CMD java -jar /web_2.11-2.2.3-SNAPSHOT-one-jar.jar -c /app/quasar-config.json
This question is inspired by Can you run GUI apps in a docker container?.
The basic idea is to run apps with audio and ui (vlc, firefox, skype, ...)
I was searching for docker containers using pulseaudio but all containers I found where using pulseaudio streaming over tcp.
(security sandboxing of the applications)
https://gist.github.com/hybris42/ce429de428e5af3a344a
https://github.com/jlund/docker-chrome-pulseaudio
https://github.com/tomparys/docker-skype-pulseaudio
In my case I would prefere playing audio from an app inside the container directly to my host pulseaudio. (without ssh tunneling and bloated docker images)
Pulseaudio because my qt app is using it ;)
it took me some time until i found out what is needed. (Ubuntu)
we start with the docker run command docker run -ti --rm myContainer sh -c "echo run something"
ALSA:
we need /dev/snd and some hardware access as it looks like.
when we put this together we have
docker run -ti --rm \
-v /dev/snd:/dev/snd \
--lxc-conf='lxc.cgroup.devices.allow = c 116:* rwm' \
myContainer sh -c "echo run something"`
In new docker versions without lxc flags you shoud use this:
docker run -ti --rm \
-v /dev/snd:/dev/snd \
--privileged \
myContainer sh -c "echo run something"`
PULSEAUDIO:
update: it may be enought to mount the pulseaudio socket within the container using -v option. this depends on your version and prefered access method. see other answers for the socket method.
Here we need basically /dev/shm, /etc/machine-id and /run/user/$uid/pulse. But that is not all (maybe because of Ubuntu and how they did it in the past). The envirorment variable XDG_RUNTIME_DIR has to be the same in the host system and in your docker container. You may also need /var/lib/dbus because some apps are accessing the machine id from here (may only containing a symbolic link to the 'real' machine id). And at least you may need the hidden home folder ~/.pulse for some temp data (i am not sure about this).
docker run -ti --rm \
-v /dev/shm:/dev/shm \
-v /etc/machine-id:/etc/machine-id \
-v /run/user/$uid/pulse:/run/user/$uid/pulse \
-v /var/lib/dbus:/var/lib/dbus \
-v ~/.pulse:/home/$dockerUsername/.pulse \
myContainer sh -c "echo run something"
In new docker versions you might need to add --privileged.
Of course you can combine both together and use it together with xServer ui forwarding like here: https://stackoverflow.com/a/28971413/2835523
Just to mention:
you can handle most of this (all without the used id) in the dockerfile
using uid=$(id -u) to get the user id and gid with id -g
creating a docker user with this id
create user script:
mkdir -p /home/$dockerUsername && \
echo "$dockerUsername:x:${uid}:${gid}:$dockerUsername,,,:/home/$dockerUsername:/bin/bash" >> /etc/passwd && \
echo "$dockerUsername:x:${uid}:" >> /etc/group && \
mkdir /etc/sudoers.d && \
echo "$dockerUsername ALL=(ALL) NOPASSWD: ALL" > /etc/sudoers.d/$dockerUsername && \
chmod 0440 /etc/sudoers.d/$dockerUsername && \
chown ${uid}:${gid} -R /home/$dockerUsername
Inspired by the links you've posted, I was able to create the following solution. It is as lightweight as I could get it. However, I'm not sure if it is (1) secure, and (2) entirely fits your use-case (as it still uses the network).
Install paprefson your host system, e.g. using sudo apt-get install paprefs on an Ubuntu machine.
Launch PulseAudio Preferences, go to the "Network Server" tab, and check the "Enable network access to local sound devices" checkbox [1]
Restart your computer. (Only restarting Pulseaudio didn't work for me on Ubuntu 14.10)
Install Pulseaudio in your container, e.g. sudo apt-get install -y pulseaudio
In your container, run export "PULSE_SERVER=tcp:<host IP address>:<host Pulseaudio port>". For example, export "PULSE_SERVER=tcp:172.16.86.13:4713" [2]. You can find out your IP address using ifconfig and the Pulseaudio port using pax11publish [1].
That's it. Step 5 should probably be automated if the IP address and Pulseaudio port are subject to change. Additionally, I'm not sure if Docker permanently stores environment variables like PULSE_SERVER: If it doesn't then you have to initialize it after each container start.
Suggestions to make my approach even better would be greatly appreciated, since I'm currently working on a similar problem as the OP.
References:
[1] https://github.com/jlund/docker-chrome-pulseaudio
[2] https://github.com/jlund/docker-chrome-pulseaudio/blob/master/Dockerfile
UPDATE (and probably the better solution):
This also works using a Unix socket instead of a TCP socket:
Start the container with -v /run/user/$UID/pulse/native:/path/to/pulseaudio/socket
In the container, run export "PULSE_SERVER=unix:/path/to/pulseaudio/socket"
The /path/to/pulseaudio/socket can be anything, for testing purposes I used /home/user/pulse.
Maybe it will even work with the same path as on the host (taking care of the $UID part) as the default socket, this way the ultimate solution would be -v /run/user/$UID/pulse/native:/run/user/<UID in container>/pulse; I haven't tested this however.
After trying most of the solutions described here I found only PulseAudio over network to be really working. However you can make it safe by keeping the authentication.
Install paprefs (on host machine):
$ apt-get install paprefs
Launch paprefs (PulseAudio Preferences) > Network Server > [X] Enable network access to local sound devices.
Restart PulseAudio:
$ service pulseaudio restart
Check it worked or restart machine:
$ (pax11publish || xprop -root PULSE_SERVER) | grep -Eo 'tcp:[^ ]*'
tcp:myhostname:4713
Now use that socket:
$ docker run \
-e PULSE_SERVER=tcp:$(hostname -i):4713 \
-e PULSE_COOKIE=/run/pulse/cookie \
-v ~/.config/pulse/cookie:/run/pulse/cookie \
...
Check that the user running inside the container has access to the cookie file ~/.config/pulse/cookie.
To test it works:
$ apt-get install mplayer
$ mplayer /usr/share/sounds/alsa/Front_Right.wav
For more info may check Docker Mopidy project.
Assuming pulseaudio is installed on host and in image, one can provide pulseaudio sound over tcp with only a few steps. pulseaudio does not need to be restarted, and no configuration has to be done on host or in image either. This way it is included in x11docker, without the need of VNC or SSH:
First, find a free tcp port:
read LOWERPORT UPPERPORT < /proc/sys/net/ipv4/ip_local_port_range
while : ; do
PULSE_PORT="`shuf -i $LOWERPORT-$UPPERPORT -n 1`"
ss -lpn | grep -q ":$PULSE_PORT " || break
done
Get ip adress of docker daemon. I always find it being 172.17.42.1/16
ip -4 -o a | grep docker0 | awk '{print $4}'
Load pulseaudio tcp module, authenticate connection to docker ip:
PULSE_MODULE_ID=$(pactl load-module module-native-protocol-tcp port=$PULSE_PORT auth-ip-acl=172.17.42.1/16)
On docker run, create environment variable PULSE_SERVER
docker run -e PULSE_SERVER=tcp:172.17.42.1:$PULSE_PORT yourimage
Afterwards, unload tcp module. (Note: for unknown reasons, unloading this module can stop pulseaudio daemon on host):
pactl unload-module $PULSE_MODULE_ID
Edit: How-To for ALSA and Pulseaudio in container
I managed to dockerize a Java game in the following ways, effectively passing through the game's sound.
This approach requires building an image, making sure the app has all the dependencies it'll need, in this case, pulseaudio and x11. If you're sure your images has everything it needs, you may procees as stated in the previous answers.
Here, we need to build the image, then we can actually launch it.
docker build -t my-unciv-image . # Run from directory where Dockerfile is
docker run --name unciv # image name\
--device /dev/dri \
-e DISPLAY=$DISPLAY \
-e PULSE_SERVER=unix:/run/user/1000/pulse/native \
--privileged \
-u $(id -u):$(id -g) \
-v /path/to/Unciv:/App \
-v /run/user/$(id -u)/pulse:/run/user/(id -u)/pulse \
-v /tmp/.X11-unix:/tmp/.X11-unix \
-w /App \
my-unciv-image \
java -jar /App/Unciv.jar
In the second command the following is specified:
--name: a name is given to the container
--device: video device*
-e: required environment vars
DISPLAY: the display number
PULSE_SERVER: PulseAudio audio server socket
--privileged: run ip privileged*, so it can access all devices
-v: Mounted volumes:
Path to the game mounted into /App in the container**
Audio server socke
Display server socket
-w: Working directory
Here is a docker-compose.yml version of it:
# docker-compose.yml
version: '3'
services:
unciv:
build: .
container_name: unciv
devices:
- /dev/dri:/dev/dri # * Either this
entrypoint: java -jar /App/Unciv.jar
environment:
- DISPLAY=$DISPLAY
- PULSE_SERVER=unix:/run/user/1000/pulse/native
privileged: true # * or this
user: 1000:1000
volumes:
- /path/to/game/:/App
- /run/user/1000/pulse:/run/user/1000/pulse
- /tmp/.X11-unix:/tmp/.X11-unix
working_dir: /App
FROM ubuntu:20.04
RUN apt-get update
RUN apt-get install openjdk-11-jre -y
RUN apt-get install -y xserver-xorg-video-all
RUN apt-get install -y libgl1-mesa-glx libgl1-mesa-dri
RUN apt-get install -y pulseaudio
USER unciv
Notes:
*Only required for a game or anything that uses openGL. Either passing the devices explicitly or running it as privileged, but I think it's enough to pass the device, making it privileged may be overkill.
**This math may be bundled with the docker image, but for a demo.
For the audio, it's required to pass env variable PULSE_SERVER and mounting the pulseaudio socket