I am getting the below error when running "pre-commit run --all-files" and when trying to make a commit, it is some python error, python version in use is "Python 2.7.16".
[INFO] Installing environment for https://github.com/pre-commit/mirrors-mypy.
[INFO] Once installed this environment will be reused.
[INFO] This may take a few minutes...
An unexpected error has occurred: CalledProcessError: command: ('/Users/user/.cache/pre-commit/repoq_mv31g8/py_env-default/bin/python', '-mpip', 'install', '.', 'tokenize-rt==3.2.0', 'pydantic')
return code: 1
expected return code: 0
stdout:
Processing /Users/user/.cache/pre-commit/repoq_mv31g8
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Collecting tokenize-rt==3.2.0
Using cached tokenize_rt-3.2.0-py2.py3-none-any.whl (6.1 kB)
Collecting pydantic
Using cached pydantic-1.9.0-cp310-cp310-macosx_11_0_arm64.whl (2.4 MB)
Collecting mypy==0.782
Using cached mypy-0.782-py3-none-any.whl (2.4 MB)
Collecting mypy-extensions<0.5.0,>=0.4.3
Using cached mypy_extensions-0.4.3-py2.py3-none-any.whl (4.5 kB)
Collecting typing-extensions>=3.7.4
Using cached typing_extensions-4.1.1-py3-none-any.whl (26 kB)
Collecting typed-ast<1.5.0,>=1.4.0
Using cached typed_ast-1.4.3.tar.gz (210 kB)
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: pre-commit-dummy-package, typed-ast
Building wheel for pre-commit-dummy-package (setup.py): started
Building wheel for pre-commit-dummy-package (setup.py): finished with status 'done'
Created wheel for pre-commit-dummy-package: filename=pre_commit_dummy_package-0.0.0-py3-none-any.whl size=1154 sha256=ea7d756fd19dee0f5f03851e3e343db4194f4b306f21fecb796b4d6d89d266fb
Stored in directory: /private/var/folders/v4/nlc505k12rn9pf4c9kntz8qm0000gn/T/pip-ephem-wheel-cache-4jcph5rz/wheels/80/78/0d/746d1697141e342b257e21c980fc51ac134e6b6400568c3646
Building wheel for typed-ast (setup.py): started
Building wheel for typed-ast (setup.py): finished with status 'error'
Running setup.py clean for typed-ast
Successfully built pre-commit-dummy-package
Failed to build typed-ast
Installing collected packages: typed-ast, mypy-extensions, typing-extensions, tokenize-rt, pydantic, mypy, pre-commit-dummy-package
Running setup.py install for typed-ast: started
Running setup.py install for typed-ast: finished with status 'error'
stderr:
error: subprocess-exited-with-error
× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [22 lines of output]
running bdist_wheel
running build
running build_py
package init file 'ast3/tests/__init__.py' not found (or not a regular file)
running build_ext
building '_ast27' extension
building '_ast3' extension
ast3/Python/ast.c:844:5: warning: code will never be executed [-Wunreachable-code]
abort();
^~~~~
ast3/Python/ast.c:4514:9: error: implicit declaration of function '_PyUnicode_DecodeUnicodeEscape' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
v = _PyUnicode_DecodeUnicodeEscape(s, len, NULL, &first_invalid_escape);
^
ast3/Python/ast.c:4514:9: note: did you mean 'PyUnicode_DecodeUnicodeEscape'?
/opt/homebrew/opt/python#3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10/unicodeobject.h:608:23: note: 'PyUnicode_DecodeUnicodeEscape' declared here
PyAPI_FUNC(PyObject*) PyUnicode_DecodeUnicodeEscape(
^
ast3/Python/ast.c:4514:7: warning: incompatible integer to pointer conversion assigning to 'PyObject *' (aka 'struct _object *') from 'int' [-Wint-conversion]
v = _PyUnicode_DecodeUnicodeEscape(s, len, NULL, &first_invalid_escape);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2 warnings and 1 error generated.
error: command '/usr/bin/clang' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for typed-ast
error: subprocess-exited-with-error
× Running setup.py install for typed-ast did not run successfully.
│ exit code: 1
╰─> [24 lines of output]
running install
/Users/user/.cache/pre-commit/repoq_mv31g8/py_env-default/lib/python3.10/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
package init file 'ast3/tests/__init__.py' not found (or not a regular file)
running build_ext
building '_ast27' extension
building '_ast3' extension
ast3/Python/ast.c:844:5: warning: code will never be executed [-Wunreachable-code]
abort();
^~~~~
ast3/Python/ast.c:4514:9: error: implicit declaration of function '_PyUnicode_DecodeUnicodeEscape' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
v = _PyUnicode_DecodeUnicodeEscape(s, len, NULL, &first_invalid_escape);
^
ast3/Python/ast.c:4514:9: note: did you mean 'PyUnicode_DecodeUnicodeEscape'?
/opt/homebrew/opt/python#3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10/unicodeobject.h:608:23: note: 'PyUnicode_DecodeUnicodeEscape' declared here
PyAPI_FUNC(PyObject*) PyUnicode_DecodeUnicodeEscape(
^
ast3/Python/ast.c:4514:7: warning: incompatible integer to pointer conversion assigning to 'PyObject *' (aka 'struct _object *') from 'int' [-Wint-conversion]
v = _PyUnicode_DecodeUnicodeEscape(s, len, NULL, &first_invalid_escape);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2 warnings and 1 error generated.
error: command '/usr/bin/clang' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: legacy-install-failure
× Encountered error while trying to install package.
╰─> typed-ast
note: This is an issue with the package mentioned above, not pip.
hint: See above for output from the failure.
Check the log at /Users/user/.cache/pre-commit/pre-commit.log
I am running it on Apple M1 Air (macOS Big Sur), what am I missing or is it a known M1 issue ?
I have tried installing pydantic manually, pre-commit is installed by brew.
Thanks in Advance
pre-commit config:
repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v4.0.1
hooks:
- id: trailing-whitespace
- id: end-of-file-fixer
- id: check-yaml
- id: check-added-large-files
- repo: https://github.com/psf/black
rev: 21.7b0
hooks:
- id: black
- repo: https://github.com/pre-commit/mirrors-mypy
rev: v0.782
hooks:
- id: mypy
additional_dependencies: [pydantic]
you're installing a very old version of mypy (0.782) which depends on an old version of typed-ast (<1.5.0) which does not support M1
you can ~usually get to the latest version by running pre-commit autoupdate -- or pick a version newer than 0.900 (where mypy started support for M1)
disclaimer: I created pre-commit
I am using Ubuntu 22.04.
In short, when I try git commit, it will report an error because I have installed pre-commit:
An unexpected error has occurred: CalledProcessError: command: ('python', '-mpip', 'install', '.')
return code: 1
expected return code: 0
stdout:
Executable `python` not found
First, we usually have python3 installed, so the python command is invalid.
Do it:
sudo apt install python-is-python3
Then, you usually encounter this problem in Ubuntu 22.04:
An unexpected error has occurred: AssertionError: BUG: expected environment for python to be healthy immediately after install, please open an issue describing your environment
more info:
virtualenv python version did not match created version:
- actual version: <<error retrieving version from /home/wind/.cache/pre-commit/reposyb8net0/py_env-python3/bin/python>>
- expected version: 3.10.4.final.0
To fix this, add this line to your .bashrc file:
export SETUPTOOLS_USE_DISTUTILS=stdlib
Refresh the configuration file by restarting a terminal window or running source ~/.bashrc.
I am trying to release a package to CRAN using devtools::release(). Whenever I get to the step for Running Git checks... I get an error.
── Running Git checks for fitzRoy ───────────────────────────────────────────────────────────────────────
Current branch: master
Checking uncommitted files... OK
Checking synchronisation with remote branch...
ERROR: Error in 'git2r_remote_fetch': unsupported URL protocol
I'm on a Mac. I've been using Git fine for the package and have no dramas committing, pushing and pulling.
I've tried updating devtools, git2r and also installing the latest version of Git but haven't had any luck.
Any suggestions?
Update - found an answer here.
Basically - you need to install libssh2. On a Mac I followed the instructions here.
I then had to re-install git2r package for R by running the following
install.packages("git2r", type = "source")
After doing that and restarting R, the error went away.
I used to use Julia in Jupyter notebook. I uninstalled yesterday the .julia directory because of other issues and after Pkg.add(IJulia) Im getting a building error related to ZMQ. the full error is below.
julia> Pkg.build("ZMQ")
INFO: Building Homebrew
Already up-to-date.
INFO: Building ZMQ
Warning: staticfloat/juliatranslated/zeromq32-3.2.5 already installed, it's just not linked.
Error: Formulae found in multiple taps:
* staticfloat/juliadeps/zeromq32
* staticfloat/juliatranslated/zeromq32
Please use the fully-qualified name e.g. staticfloat/juliadeps/zeromq32 to refer the formula.
=================================[ ERROR: ZMQ ]=================================
LoadError: failed process: Process(`/Users/pacagal/.julia/v0.5/Homebrew/deps/usr/bin/brew link staticfloat/juliatranslated/zeromq32 --force`, ProcessExited(1)) [1]
while loading /Users/pacagal/.julia/v0.5/ZMQ/deps/build.jl, in expression starting on line 35
================================================================================
================================[ BUILD ERRORS ]================================
WARNING: ZMQ had build errors.
- packages with build errors remain installed in /Users/pacagal/.julia/v0.5
- build the package(s) and all dependencies with `Pkg.build("ZMQ")`
- build a single package by running its `deps/build.jl` script
================================================================================
I have also run the build.jl file but I am getting an error too.
I was having the same issue this morning. In the terminal I ran brew install zmq and that resolved the issue.
I still had to run julia>Pkg.build("Nettle") after installing zmq and after that IJulia is running fine.
Using Julia 0.5.0 and Emacs 25.1 on a Windows 10 machine, I am attempting to use the Gadfly package. Unfortunately, the following output appears:
C:\Users\CaitlinG>julia -e "using Gadfly"
ERROR: ArgumentError: Module Gadfly not found in current path.
Run `Pkg.add("Gadfly")` to install the Gadfly package.
in require(::Symbol) at .\loading.jl:365
in eval(::Module, ::Any) at .\boot.jl:234
in process_options(::Base.JLOptions) at .\client.jl:239
in _start() at .\client.jl:318
C:\Users\CaitlinG>julia -e "Pkg.add(\"Gadfly\")"
INFO: Nothing to be done
INFO: METADATA is out-of-date — you may not have the latest version of Gadfly
INFO: Use `Pkg.update()` to get the latest versions of your packages
C:\Users\CaitlinG>julia -e "Pkg.update()"
INFO: Updating METADATA...
INFO: Updating cache of DataFrames...
INFO: Updating cache of DataFrames...
INFO: Computing changes...
INFO: No packages to install, update or remove
Does anyone know why this is occurring?
Thanks.
I am trying to install the Cairo and Winston packages fro Julia.
However, this is the following output that I receive when I try to test Winston.
julia> Pkg.add("Winston")
INFO: Nothing to be done.
julia> using Winston
ERROR: could not open file /Users/sethhirsh/.julia/v0.2/Cairo/src/../deps/deps.jl
in include at boot.jl:238
in include_from_node1 at loading.jl:114
in include at boot.jl:238
in include_from_node1 at loading.jl:114
in reload_path at loading.jl:140
in _require at loading.jl:58
in require at loading.jl:46
vin include at boot.jl:238
in include_from_node1 at loading.jl:114
in reload_path at loading.jl:140
in _require at loading.jl:58
in require at loading.jl:46
at /Users/sethhirsh/.julia/v0.2/Cairo/src/Cairo.jl:3
at /Users/sethhirsh/.julia/v0.2/Winston/src/Winston.jl:3
julia> Pkg.add("Cairo")
INFO: Nothing to be done.
================================[ ERROR: Cairo ]================================
failed process: Process(/Users/sethhirsh/.julia/v0.2/Cairo/deps/src/glib-2.34.3/configure --prefix=/Users/sethhirsh/.julia/v0.2/Cairo/deps/usr, ProcessExited(1)) [1]v
at /Users/sethhirsh/.julia/v0.2/Cairo/deps/build.jl:130`
================================================================================
================================[ BUILD ERRORS ]================================
WARNING: Homebrew and Cairo had build errors.
packages with build errors remain installed in /Users/sethhirsh/.julia/v0.2
build a package and all its dependencies with `Pkg.build(pkg)
build a single package by running its deps/build.jl script
================================================================================ `
Any help in fixing these errors is appreciated.
Me too got these errors once. For me When adding 'Winston' library 'Cairo' was a dependency. So What I would suggest is to completely uninstall Julia from system, because Package.rm() may not not make things clear for re-installation of packages alone. Then reinstall the Julia and make sure internet connection before typing Package.add("Winston"). Cairo will come along.