I am trying to install lme4 with R studio on Windows 10, unsuccessfully. Apparently the nloptr package is not correctly installed. R returns the following error message:
>Warning in install.packages : installation of package ‘nloptr’ had non-zero exit status
then
>ERROR: dependency 'nloptr' is not available for package 'lme4'
and at the end
>Warning in install.packages : installation of package ‘lme4’ had non-zero exit status
When I started to use R studio in Windows I have followed this https://cran.r-project.org/bin/windows/Rtools/ and installed the Rtools, MikTex and InnoSetup.
If I try to install separately the package nloptr it does not work either and gives the same warning message.
Has this happened to anyone while installing lme4?
Related
Trying to instal SPARQL in Rstudio and got this error:
ERROR: dependency ‘SPARQL’ is not available for package ‘disgenet2r’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/disgenet2r’
Warning messages:
1: package ‘SPARQL’ is not available for this version of R
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
2: In i.p(...) :
installation of package ‘/var/folders/43/7hr3j7q17tn0ns1g67l5vbq80000gn/T//Rtmptk5KoF/file2d1b24460f94/disgenet2r_0.99.2.tar.gz’ had non-zero exit status
hi i am trying to install package for experiment designs like this
install.packages("daewr", dependencies = T)
but it returns the following
configure: error: GNU MP not found, or not 4.1.4 or up, see http://gmplib.org
ERROR: configuration failed for package ‘gmp’
* removing ‘/home/yeferson/R/x86_64-pc-linux-gnu-library/4.0/gmp’
Warning in install.packages :
installation of package ‘gmp’ had non-zero exit status
ERROR: dependency ‘gmp’ is not available for package ‘partitions’
* removing ‘/home/yeferson/R/x86_64-pc-linux-gnu-library/4.0/partitions’
Warning in install.packages :
installation of package ‘partitions’ had non-zero exit status
ERROR: dependency ‘partitions’ is not available for package ‘DoE.base’
* removing ‘/home/yeferson/R/x86_64-pc-linux-gnu-library/4.0/DoE.base’
Warning in install.packages :
installation of package ‘DoE.base’ had non-zero exit status
ERROR: dependency ‘DoE.base’ is not available for package ‘FrF2’
* removing ‘/home/yeferson/R/x86_64-pc-linux-gnu-library/4.0/FrF2’
Warning in install.packages :
installation of package ‘FrF2’ had non-zero exit status
ERROR: dependency ‘FrF2’ is not available for package ‘daewr’
* removing ‘/home/yeferson/R/x86_64-pc-linux-gnu-library/4.0/daewr’
Warning in install.packages :
installation of package ‘daewr’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpB1bSe0/downloaded_packages’
so i decided to download the file from https://cran.r-project.org/web/packages/daewr/index.html
after trying to install it returns me
also installing the dependencies ‘gmp’, ‘partitions’, ‘DoE.base’, ‘FrF2.catlg128’
I try to install the first one but it asks for a Bessel package and it still gives me problems
I solved it by installing dependency one by one, many answer you install the dependencies but they do not say how I will explain them for the new ones in linux and in R to install the daerw package with the aforementioned problems, install the following in the linux console
sudo apt-get install libgsl-dev
with that install libraries now I can open R and install
install.packages('gsl')
then I opened the linux console again and installed
sudo apt-get install libgmp-dev
I go back to R and install
install.packages("gmp", dependencies = T)
now I can install the package without problems
install.packages("daewr", dependencies = T)
library(daewr)
I hope that any comment is welcome.
I try to install the tidyverse and tidytext package in R and it gives me the following error
the message is similar in both I would like to know what is the cause and a possible solution
ERROR: dependencies ‘hunspell’, ‘tokenizers’ are not available for package ‘tidytext’
* removing ‘/home/yeferson/R/x86_64-pc-linux-gnu-library/4.0/tidytext’
Warning in install.packages :
installation of package ‘tidytext’ had non-zero exit status
was installed before R 4.0.0: please re-install it
I'm trying to install the 'agricolae' package on R, but I get an error saying
configure: error: libproj not found in standard or given locations.
ERROR: configuration failed for package ‘sf’
* removing ‘/R/x86_64-pc-linux-gnu-library/3.6/sf’
Warning in install.packages :
installation of package ‘sf’ had non-zero exit status
ERROR: dependency ‘sf’ is not available for package ‘spdep’
* removing ‘/R/x86_64-pc-linux-gnu-library/3.6/spdep’
Warning in install.packages :
installation of package ‘spdep’ had non-zero exit status
ERROR: dependency ‘spdep’ is not available for package ‘agricolae’
* removing ‘/R/x86_64-pc-linux-gnu-library/3.6/agricolae’
Warning in install.packages :
installation of package ‘agricolae’ had non-zero exit status
I recently upgraded to Ubuntu 18.04.2 and R version 3.6.0 (2019-04-26) -- "Planting of a Tree" and that's when the problems started.
When I do
$ sudo apt-get install -y libproj-dev
I get:
libproj-dev is already the newest version (5.2.0-1~bionic0).
The error says that package 'sf' is not available for dependency 'spdep'. So you should be attempting to install pkg 'sf'. (I'm on the same OS as you and pkg:agricolae installed without problem just now. I have a more complete set of spatial R and system packages than you do.)
Edit: There have been reports that it was necessary in addressing this problem to create an environment link to the location of your libraries:
$ export LD_LIBRARY_PATH=/lib:/usr/lib:/usr/local/lib
(From: https://stat.ethz.ch/pipermail/r-sig-geo/2018-August/026740.html which in turn linked to https://gis.stackexchange.com/questions/157059/repairing-broken-gdal-and-proj-4-on-ubuntu, which has so further debugging options mentioned.)
I have been trying over the weekend to install mosaic, car and some other packages on an R kernel (3.4.2) in Jupyter Notebook running Ubuntu 16.04. I have tried install.packages('car', '/home/jayaramdas/anaconda3/lib/R/library/', repos='http://cran.us.r-project.org'): it returns:
also installing the dependency ‘pbkrtest’
Warning message in install.packages("car", "/home/jayaramdas/anaconda3/lib/R/library/", :
“installation of package ‘pbkrtest’ had non-zero exit status”Warning message in install.packages("car", "/home/jayaramdas/anaconda3/lib/R/library/", :
“installation of package ‘car’ had non-zero exit status”
I've tried installing it in the original R package and I get this:
Warning messages:
1: In install.packages("car", "/home/jayaramdas/anaconda3/lib/R/library/", :
installation of package ‘pbkrtest’ had non-zero exit status
2: In install.packages("car", "/home/jayaramdas/anaconda3/lib/R/library/", :
installation of package ‘car’ had non-zero exit status
I tried using Rstudio to install it, but it won't let me write the file. I also tried downloading the zip file for Ubuntu and it still gave the 'non-zero exiterror. Is this a usual problem that people have withcar` and other R packages? I am just trying to figure how to add some packages to my jupyter notebook.
You are on Ubuntu. You want to use a package manager (conda).
May I suggest you use the native one?
sudo apt-get install r-cran-car
will install car and all its dependencies. If not, file an Ubuntu bug report.
Similarly, you can get many more packages from Ubuntu: apt-cache search 'r-cran-*'. And once you consider the Rutter PPAs you have a large part of CRAN prebuilt.