Persistent problems installing the car package in R - r

I'm having problems installing the package car in R.
There are previous posts on the topic, including this one and this other one.
I have followed the suggestions I've come across so far without success. I am using R Version 3.2.2. and RStudio.
This is the message I get:
install.packages("car")
Installing package into ‘C:/Users/.../Documents/R/win-library/3.2’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/car_2.1-3.zip'
Content type 'application/zip' length 1447213 bytes (1.4 MB)
downloaded 1.4 MB
package ‘car’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\...\AppData\Local\Temp\Rtmpc3xr5i\downloaded_packages
If I check I get,
?car
No documentation for ‘car’ in specified packages and libraries:
you could try ‘??car’
I tried installing it from R with Install packages from local zip drives, and looking for the zip in C:\Users\...\AppData\Local\Temp\Rtmpc3xr5i\downloaded_packages, but this is the result:
library(car)
Error in library.dynam(lib, package, package.lib) :
DLL ‘SparseM’ not found: maybe not installed for this architecture?
In addition: Warning message:
package ‘car’ was built under R version 3.2.5
Error: package or namespace load failed for ‘car’
I did try installing SparseM even before posting the OP without success:
> install.packages("SparseM")
Installing package into ‘C:/Users/.../Documents/R/win-library/3.2’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/SparseM_1.7.zip'
Content type 'application/zip' length 795531 bytes (776 KB)
downloaded 776 KB
package ‘SparseM’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\...\AppData\Local\Temp\Rtmpc3xr5i\downloaded_packages
> ?SparseM
No documentation for ‘SparseM’ in specified packages and libraries:
you could try ‘??SparseM’
Follow up:
After a comment regarding R version 3.2.3 I thought it would be an easy fix to just download this version, install, and erase 3.2.2. The problem then is that RStudio did not seem to work. I un-installed and re-installed R-studio, and now I get this when opening R studio:

Without knowing what version of the car package you're using, it's hard to know exactly what the source of the problem is. It seems likely, however, that you haven't installed the proper version of the pbkrtest, on which the Rcmdr package depends.
Is there a compelling reason not to upgrade everything to their current versions, including R, all packages, and RStudio?
Best,
John

Related

Can't install caret package

I'm not sure what's happening here but the caret package is not installing properly. I realize similar problems have been posted before but I can't figure it out.
install.packages("caret")
library(caret)
Error: package or namespace load failed for ‘caret’ in get(Info[i, 1], envir = env):
cannot open file 'C:/Users/John Compton/Documents/R/win-library/3.6/MASS/R/MASS.rdb': No such file or directory
So I've been trying to figure this out. I have the fully updated R 3.6.1, I also ran a thing that I've since lost of like install.packages("caret", repos = "cran/....", c = ("Dependencies", "Suggestions")) which took about 30 minutes and installed like every suggested package, so I don't know what the error could be. How do I fix the error with this package?
Edit: To include the install.package call
> install.packages("caret")
Installing package into ‘C:/Users/John Compton/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.6/caret_6.0-84.zip'
Content type 'application/zip' length 6237886 bytes (5.9 MB)
downloaded 5.9 MB
package ‘caret’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\John Compton\AppData\Local\Temp\RtmpGuKafa\downloaded_packages
>

Bioconductor installation difficulty

recently I've changed a computer into a new one and suddenly I cannot install Bioconductor. I used this code, and this is what I get:
source("https://bioconductor.org/biocLite.R")
Installing package into ‘\\uniwa.uwa.edu.au/userhome/students8/21891458/My Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
trying URL 'https://bioconductor.org/packages/3.7/bioc/bin/windows/contrib/3.5/BiocInstaller_1.30.0.zip'
Content type 'application/zip' length 102191 bytes (99 KB)
downloaded 99 KB
package ‘BiocInstaller’ successfully unpacked and MD5 sums checked
Warning in install.packages :
cannot remove prior installation of package ‘BiocInstaller’
The downloaded binary packages are in
C:\Users\21891458\AppData\Local\Temp\Rtmp2DZpRQ\downloaded_packages
'biocLite.R' failed to install 'BiocInstaller', use 'install.packages("BiocInstaller",
repos="https://bioconductor.org/packages/3.7/bioc")' or 'install.packages("BiocInstaller",
repos="http://bioconductor.org/packages/3.7/bioc")'
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Devtools/library download error

I am trying to install Devtools into Rstudio. I was using Rgui, but decided to use Rstudio becuase it seems to be easier. I able to get DevTools on Rgui, but not RStudio.
Basicly. the library on Rstudio does not have DEVtools installed and I am having problems. Any ideas?
I tried the install.packages("devtools") states it is install in y computer, but does not show in the library. I tried GitHub. did not wok either.
install.packages("devtools")
Installing package into ‘C:/Users/Steven/Documents/R/win-library/3.2’
(as ‘lib’ is unspecified)
trying
URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/devtools_1.10.0.zip'
Content type 'application/zip' length 391482 bytes (382 KB)
downloaded 382 KB
package ‘devtools’ successfully unpacked and MD5 sums checked
Warning in install.packages :
cannot remove prior installation of package ‘devtools’
The downloaded binary packages are in
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Issue loading 'dplyr' packages

All
I am trying to install and load 'dplyr' packages so that I can start to manipulate data at ease. Here is what I did and the error messages I got.
install.packages("dplyr")
Installing package into ‘C:/Users/YingHaw/Documents/R/win-library/3.1’
(as ‘lib’ is unspecified)
trying URL 'http://cran.rstudio.com/bin/windows/contrib/3.1/dplyr_0.4.1.zip'
Content type 'application/zip' length 2596780 bytes (2.5 MB)
opened URL
downloaded 2.5 MB
package ‘dplyr’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\YingHaw\AppData\Local\Temp\Rtmp4KMRy3\downloaded_packages
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Error in get(Info[i, 1], envir = env) :
cannot open file 'C:/Users/YingHaw/Documents/R/win-library/3.1/Rcpp/R/Rcpp.rdb': No such file or directory
Error: package or namespace load failed for ‘dplyr’
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Anson
Looks like you're facing issues in installing the dplyr package. Better remove both the packages plyr and dplyr (if already installed)and then try again installing it. if not better update your rstudio version and then try installing it
I have previously faced these issues but after removing and reinstalling it, that works.

R libraries and paths - overview

I am using R Studio with R version 3.1.
I am a bit confused about how the overall file paths and conventions work.
If someone has a link to a good explanation that would be great.
I want to know if a package needs to be installed into the working directory ie do i need to set lib = "/xx/yy/zz" to the same place as the getwd() returns ?
I have supposedly succesfully installed RWeka --- package ‘RWeka’ successfully unpacked and MD5 sums checked
however when I try "library("RWeka") i get the
"Error in library("Rweka") : there is no package called ‘Rweka’ "
After I had installed the package it said
"package ‘RWeka’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
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(as ‘lib’ is unspecified)
hence the question - are all packages downloaded to the place where R is installed and thats ok as long as all the code and files we are trying to access are in the set working director.
Many thanks
Here is the train
RWeka installed successfully
however library(RWeka) shows the following
install.packages("RWeka")
Installing package into ‘C:/Users/My Name/Documents/R/win-library/3.1’
(as ‘lib’ is unspecified)
trying URL 'http://cran.rstudio.com/bin/windows/contrib/3.1/RWeka_0.4-23.zip'
Content type 'application/zip' length 535623 bytes (523 Kb)
opened URL
downloaded 523 Kb
package ‘RWeka’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\My Name\AppData\Local\Temp\RtmpOc8SpX\downloaded_packages
library(RWeka)
Error : .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: No CurrentVersion entry in Software/JavaSoft registry! Try re-installing Java and make sure R and Java have matching architectures.
Error: package or namespace load failed for ‘RWeka’
So I guess the questions are
1. Something else to do other than installing Java from Java.com (have uninstalled and reinstalled no change)
2. I am using R 3.1.1
Please check if you are running R or R Studio on 32 or 64 bit version. Java and R must both be running the same version of architecture.
Andy / Prakash are correct - the function in R
Sys.getenv("R_ARCH") will tell you whether you are running the 32 bit or 64 bit version of R
64 bit java can be downloaded here.
https://www.java.com/en/download/faq/java_win64bit.xml#Java%20for%2064-bit

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