Integrating Juno IDE with Atom editor for julia in windows - julia

After having installed Atom and then integrating it with Juno IDE from here, i found this error shown at startup:-
Julia could not be found. We tried to launch Julia from: C:\Program Files\Julia-0.4.6\bin\julia.exe This path can be changed in the settings.
The installation path is correct. Then how to rectify this error?
ADDENDUM:
My config.cson file:
"*":
autosave:
enabled: true
core:
destroyEmptyPanes: false
openEmptyEditorOnStart: false
themes: [
"atom-dark-ui"
"atom-dark-syntax"
]
editor:
showIndentGuide: true
tabLength: 4
"exception-reporting":
userId: "xxxxxxx-xxxx-xxxx-xxxx-xxxxxxxxxxx"
"julia-client":
enableMenu: true
enableToolBar: true
juliaPath: "'C:\\Program Files\\Julia-0.4.6\\bin\\julia.exe'"
launchOnStartup: true
"tool-bar":
position: "Left"
"uber-juno":
disable: true
welcome:
showOnStartup: false

Related

How to specify a similiarities options checker of pylint in pre-commit args?

I've been trying to configure my pre-commit config file to ignore similiarities on imports and docstrings as described in: https://pylint.pycqa.org/en/latest/technical_reference/features.html?highlight=similar#similarities-checker-options
But I don't use any of .pylintrc files, just the .pre-commit-config.yaml.
Below is a snippet from .pre-commit-config.yaml
- id: pylint
name: pylint
entry: pylint
language: python
require_serial: true
types_or: [python, pyi]
exclude: 'kedro-init'
args: ['--disable=E0401,E1101,E1102,R0913,R0914,W0703,E0602,C0103,C0114,
W0102,C0330,C0326,W0107,R1716,R0902,E0611,E1124', '--fail-under=7.5',
'--ignore-imports=yes', '--ignore-docstrings=yes'] #this last line does not work
Is there any way to specify those options on the args key?
Thx!
python version: 3.8.x
pylint version: 2.12.3
If you retype your args in .pre-commit-config.yaml as below, it should work.
- repo: local
hooks:
- id: pylint
name: pylint
entry: pylint
language: python
require_serial: true
types_or: [python, pyi]
exclude: 'kedro-init'
args: ["--ignore=E0401,E1101,E1102,R0913,R0914,W0703,E0602,C0103,
C0114, W0102,C0330,C0326,W0107,R1716,R0902,E0611,E1124",
"--fail-under=7.5"]

Swift Package Manager - binaryTarget with .zip file fails to validate

I tried different approaches to add a binaryTarget to a Swift package - 2 of them worked out fine (Target1 and Target2 in the example), but third approach (Target3) that should also work according to documentation does not validate: unsupported extension for binary target 'Target3'; valid extensions are: xcframework
For not bloating the repo too much with every binary release I would prefer the zip approach here... - Anyone got it working with a binaryTarget and a .zip file in path: added to the Package repository, or any hints what I'm doing wrong here?
(Xcode 12.4, t3.zip containing only the .xcframework at root level)
// swift-tools-version:5.3
// The swift-tools-version declares the minimum version of Swift required to build this package.
import PackageDescription
let package = Package(
name: "StackoverflowExamplePackage",
platforms: [
.iOS(.v9)
],
products: [
.library(
name: "Lib1",
targets: ["Target1"]),
.library(
name: "Lib2",
targets: ["Target2", "Target3"]),
],
dependencies: [
// .package(url: /* package url */, from: "1.0.0"),
],
targets: [
.binaryTarget(
name: "Target1",
url: "https://myurl.example.com/t1-xcframework.zip",
checksum: "777ddd6381e2201b7eb778b72f373f77e1190fd9dc9503f703e37c86d3b89674"
),
.binaryTarget(name: "Target2", path: "./Binaries/t2.xcframework"),
.binaryTarget(name: "Target3", path: "./Binaries/t3.zip"),
]
)
Zip archive support for local binary targets in SPM was merged last year in October and has been finally released along with Xcode 13.3.

Is the error (failed to open BamFile) I'm getting a result of corrupted files? Or could there be an issue with my code?

#---> Locate and read in the bam files
bamfiles <- dir(file.path("C:/Users/Desktop/Research/Summer 2020/BAMRnaSeq1/Local alignment"), ".bam")
file.exists(bamfiles)
Output: [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
#---> Define bam files for count step on Rsamtools
library("Rsamtools")
bamfiles <- BamFileList(bamfiles, yieldSize=2000000)
#---> Check correct chr names
seqinfo(bamfiles[1])
Output:
Error in value[[3L]](cond) :
failed to open BamFile: failed to open SAM/BAM file
file: 'CD8-O-Hi_21_II_19_local.bam'
Could there be something wrong with my code, or is it most likely the file that isn't working? Given the fact that it first said All True for the file.exists, I don't see why the seqinfo isn't reading the bamfiles.

Warning: Missing argument 1 for FM\ElFinderPHP\Connector\ElFinderConnector::run()

I'm working in a symfony project and I have a problem with browsing server in ckeditor for inserting images.
I'm using "Trsteel/ckeditor-bundle": "~1.8" and "helios-ag/fm-elfinder-bundle": "~4.0". When I try to browse the server to add image I have this error (Unable to connect to backend):
Warning: Missing argument 1 for
FM\ElFinderPHP\Connector\ElFinderConnector::run(), called in
C:\wamp\www\awb\vendor\helios-ag\fm-elfinder-bundle\Loader\ElFinderLoader.php
on line 63 and defined
Here is my config.yml:
trsteel_ckeditor: class: Trsteel\CkeditorBundle\Form\Type\CkeditorType
transformers: [] toolbar: ['document', 'clipboard', 'editing', '/',
'basicstyles', 'paragraph', 'links', '/', 'insert', 'styles', 'tools']
toolbar_groups: document: ['Source','-','Save','-','Templates']
clipboard:
['Cut','Copy','Paste','PasteText','PasteFromWord','-','Undo','Redo']
editing: ['Find','Replace','-','SelectAll'] basicstyles:
['Bold','Italic','Underline','Strike','Subscript','Superscript','-','RemoveFormat']
paragraph:
['NumberedList','BulletedList','-','Outdent','Indent','-','JustifyLeft',
'JustifyCenter','JustifyRight','JustifyBlock'] links:
['Link','Unlink','Anchor'] insert:
['Image','Flash','Table','HorizontalRule'] styles: ['Styles','Format']
tools: ['Maximize', 'ShowBlocks'] ui_color: '#ffffff'
startup_outline_blocks: false width: 100% #Integer or % height: 300
Integer or % language: 'fr'
filebrowser_upload_url:
url: relative-url.php?type=file filebrowser_image_browse_url: route: elfinder route_parameters: instance: default
fm_elfinder: instances: default: locale: %locale% editor: ckeditor
fullscreen: true include_assets: true connector: debug: false roots:
uploads: show_hidden: false driver: LocalFileSystem path: uploads
upload_allow: ['image/png', 'image/jpg', 'image/jpeg'] upload_deny:
['all'] upload_max_size: 6M
Can someone help me please?
You should as suggested in the issues of fe-elfindeer to use the 5.0.5 version of ElFinderBundle who provides the 1st parameter to the ElFinderConnector::run() function.
Maybe you could try to edit your composer.json file as following :
"helios-ag/fm-elfinder-bundle": "~5.0",
"helios-ag/fm-elfinder-php-connector": "~2.3"
and run composer update helios-ag/fm-elfinder-bundle helios-ag/fm-elfinder-php-connector

Knp Snappy Bundle Options

I'm using KnpSnappyBundle for my Symfony project and I'm trying to define some options in my config file. However if I set, for example:
knp_snappy:
pdf:
enabled: true
binary: /usr/local/bin/wkhtmltopdf
options: [ 'no-outline' ]
I get an error:
The option '0' does not exist.
How do I define options for the bundle?
Well, that was kinda dumb of me. YAML to the answer:
knp_snappy:
pdf:
enabled: true
binary: /usr/local/bin/wkhtmltopdf
options:
no-outline: true
The answer is:
knp_snappy:
pdf:
enabled: true
binary: /path/to/wkhtmltopdf
options:
- { name: 'page-size', value: 'A4' }

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