> install.packages("C:/Users/andyk/Downloads/PET_0.5.1.tar.gz", repos = NULL, type = "source")
‘C:/Users/andyk/AppData/Local/R/win-library/4.2’의 위치에 패키지(들)을 설치합니다.
(왜냐하면 ‘lib’가 지정되지 않았기 때문입니다)
* installing *source* package 'PET' ...
** package 'PET' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Hough.c -o Hough.o
Hough.c: In function 'Hough4':
Hough.c:41:10: warning: variable 'theta_min' set but not used [-Wunused-but-set-variable]
41 | double theta_min;
| ^~~~~~~~~
Hough.c:40:38: warning: variable 'y' set but not used [-Wunused-but-set-variable]
40 | double *costheta,*sintheta,theta,x,y;
| ^
Hough.c: In function 'Hough3':
Hough.c:118:10: warning: variable 'theta_min' set but not used [-Wunused-but-set-variable]
118 | double theta_min;
| ^~~~~~~~~
Hough.c: In function 'Hough2':
Hough.c:173:10: warning: variable 'theta_min' set but not used [-Wunused-but-set-variable]
173 | double theta_min;
| ^~~~~~~~~
Hough.c: In function 'Hough1':
Hough.c:227:10: warning: variable 'theta_min' set but not used [-Wunused-but-set-variable]
227 | double theta_min;
| ^~~~~~~~~
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c PET_init.c -o PET_init.o
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c amatrix.c -o amatrix.o
amatrix.c: In function 'RegulateMatrix':
amatrix.c:234:10: warning: variable 'tempVv' set but not used [-Wunused-but-set-variable]
234 | float *tempVv;
| ^~~~~~
amatrix.c: In function 'RegulateL1Matrix':
amatrix.c:289:10: warning: variable 'tempVv' set but not used [-Wunused-but-set-variable]
289 | float *tempVv;
| ^~~~~~
amatrix.c: In function 'GenerateAMatrixColumn':
amatrix.c:784:9: warning: variable 'onedivsq2' set but not used [-Wunused-but-set-variable]
784 | float onedivsq2,psi,pidivDeltaX,costheta,sintheta,of;
| ^~~~~~~~~
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c art.c -o art.o
art.c: In function 'FAST_ART':
art.c:128:10: warning: variable 'tempXv' set but not used [-Wunused-but-set-variable]
128 | float *tempXv,*tempBv;
| ^~~~~~
art.c: In function 'SLOW_ART':
art.c:239:10: warning: variable 'tempXv' set but not used [-Wunused-but-set-variable]
239 | float *tempXv,*tempBv;
| ^~~~~~
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c calc.c -o calc.o
calc.c: In function 'BackFilter':
calc.c:335:19: warning: variable 'M' set but not used [-Wunused-but-set-variable]
335 | int i,m,n,mm,nn,M,N,OldHeight,OldWidth;
| ^
calc.c: In function 'CentralSliceCZ':
calc.c:700:49: warning: variable 'rhomin' set but not used [-Wunused-but-set-variable]
700 | float DC,deltatheta,theta,thetaadj,*realtheta,rhomin,deltarho;
| ^~~~~~
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cg.c -o cg.o
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c em.c -o em.o
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c eval.c -o eval.o
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c imgtools.c -o imgtools.o
imgtools.c: In function 'ReadPET':
imgtools.c:1005:10: warning: variable 'result' set but not used [-Wunused-but-set-variable]
1005 | size_t result;
| ^~~~~~
imgtools.c: In function 'ReadFIFHeader':
imgtools.c:1148:10: warning: variable 'result' set but not used [-Wunused-but-set-variable]
1148 | size_t result;
| ^~~~~~
imgtools.c: In function 'ReadFIF':
imgtools.c:1222:10: warning: variable 'result' set but not used [-Wunused-but-set-variable]
1222 | size_t result;
| ^~~~~~
imgtools.c: In function 'ReadAnalyze':
imgtools.c:1616:10: warning: variable 'result' set but not used [-Wunused-but-set-variable]
1616 | size_t result;
| ^~~~~~
imgtools.c:1614:21: warning: variable 'OffSet' set but not used [-Wunused-but-set-variable]
1614 | float ScaleFactor,OffSet;
| ^~~~~~
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c iradon.c -o iradon.o
iradon.c: In function 'iradon':
iradon.c:271:5: warning: 'spectrum' may be used uninitialized in this function [-Wmaybe-uninitialized]
271 | FreeImage(spectrum);
| ^~~~~~~~~~~~~~~~~~~
iradon.c: In function 'loadFile':
iradon.c:568:9: warning: 'list' may be used uninitialized in this function [-Wmaybe-uninitialized]
568 | return(list);
| ^
iradon.c:404:16: warning: 'typeF' may be used uninitialized in this function [-Wmaybe-uninitialized]
404 | OutImage = ReadImage(fileName, typeF);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
iradon.c: In function 'writeFile':
iradon.c:684:19: warning: 'N' may be used uninitialized in this function [-Wmaybe-uninitialized]
684 | SaveImage=NewFloatImage(fileName, M, N, _RealArray);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iradon.c:684:19: warning: 'M' may be used uninitialized in this function [-Wmaybe-uninitialized]
iradon.c:772:5: warning: 'typeF' may be used uninitialized in this function [-Wmaybe-uninitialized]
772 | WriteImage(SaveImage, typeF);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c it.c -o it.o
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c itreadargs.c -o itreadargs.o
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c misc.c -o misc.o
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c oradLI.c -o oradLI.o
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c oradNN.c -o oradNN.o
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c oradSINC.c -o oradSINC.o
oradSINC.c: In function 'radonSINC':
oradSINC.c:52:10: warning: variable 'idx' set but not used [-Wunused-but-set-variable]
52 | double idx,mintrig,psi;
| ^~~
gcc -I"C:/PROGRA~1/R/R-42~1.1/include" -DNDEBUG -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sparse.c -o sparse.o
sparse.c: In function 'ReadSIFHeader':
sparse.c:607:10: warning: variable 'result' set but not used [-Wunused-but-set-variable]
607 | size_t result;
| ^~~~~~
sparse.c: In function 'ReadSIF':
sparse.c:657:10: warning: variable 'result' set but not used [-Wunused-but-set-variable]
657 | size_t result;
| ^~~~~~
sparse.c: In function 'MeanFilterVector':
sparse.c:1537:13: warning: variable 'area' set but not used [-Wunused-but-set-variable]
1537 | float sum,area,*tempVv,*tempNv,*tempKernM;
| ^~~~
gcc -shared -s -static-libgcc -o PET.dll tmp.def Hough.o PET_init.o amatrix.o art.o calc.o cg.o em.o eval.o imgtools.o iradon.o it.o itreadargs.o misc.o oradLI.o oradNN.o oradSINC.o sparse.o -LC:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/lib -LC:/PROGRA~1/R/R-42~1.1/bin/x64 -lR
C:\RBuildTools\4.2\x86_64-w64-mingw32.static.posix\bin/ld.exe: it.o:it.c:(.bss+0x610): multiple definition of `DebugNiveau'; iradon.o:iradon.c:(.data+0x0): first defined here
C:\RBuildTools\4.2\x86_64-w64-mingw32.static.posix\bin/ld.exe: it.o:it.c:(.bss+0x480): multiple definition of `IniFile'; iradon.o:iradon.c:(.bss+0x0): first defined here
C:\RBuildTools\4.2\x86_64-w64-mingw32.static.posix\bin/ld.exe: it.o:it.c:(.bss+0x598): multiple definition of `multtemp'; iradon.o:iradon.c:(.bss+0x118): first defined here
C:\RBuildTools\4.2\x86_64-w64-mingw32.static.posix\bin/ld.exe: it.o:it.c:(.bss+0x5a0): multiple definition of `LogFileName'; iradon.o:iradon.c:(.bss+0x120): first defined here
C:\RBuildTools\4.2\x86_64-w64-mingw32.static.posix\bin/ld.exe: it.o:it.c:(.bss+0x608): multiple definition of `LogFile'; iradon.o:iradon.c:(.bss+0x188): first defined here
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'PET'
* removing 'C:/Users/andyk/AppData/Local/R/win-library/4.2/PET'
Warning in install.packages :
패키지 ‘C:/Users/andyk/Downloads/PET_0.5.1.tar.gz’의 설치가 0이 아닌 종료상태를 가졌습니다
I need the package PET to install gitter and DeadOrAlive. I've tried manually installing with tar. file for PET, using install.packages, and other versions of the package, but none of the methods worked.
Is it not possible to install the package at all, or are there other ways of installing PET to download the subsequent packages.
I am getting a variety of compilation errors relating to qvariant when compiling my program. I have not modified the Qt libs/source, so why am I getting these errors? (What do they mean)
/Qt/5.9.9/gcc_64/mkspecs/linux-g++ -o tl_ansi_codes.o /mydir/tl_ansi_formatting/tl_ansi_codes.cpp
In file included from /opt/Qt/5.9.9/gcc_64/include/QtCore/qlocale.h:43,
from /opt/Qt/5.9.9/gcc_64/include/QtCore/qtextstream.h:46,
from /opt/Qt/5.9.9/gcc_64/include/QtCore/qdebug.h:49,
from /opt/Qt/5.9.9/gcc_64/include/QtCore/QDebug:1,
from /mydir/tl_ansi_formatting/tl_ansi_codes.cpp:9:
/opt/Qt/5.9.9/gcc_64/include/QtCore/qvariant.h: In constructor ‘QVariant::QVariant(QVariant&&)’:
/opt/Qt/5.9.9/gcc_64/include/QtCore/qvariant.h:265:25: warning: implicitly-declared ‘constexpr QVariant::Private& QVariant::Private::operator=(const QVariant::Private&)’ is deprecated [-Wdeprecated-copy]
265 | { other.d = Private(); }
| ^
/opt/Qt/5.9.9/gcc_64/include/QtCore/qvariant.h:380:16: note: because ‘QVariant::Private’ has user-provided ‘QVariant::Private::Private(const QVariant::Private&)’
380 | inline Private(const Private &other) Q_DECL_NOTHROW
| ^~~~~~~
g++ -c -pipe -g -Wall -W -D_REENTRANT -fPIC -DQT_DEPRECATED_WARNINGS -Dproject_vls=1 -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_SQL_LIB -DQT_CORE_LIB -I/mydir//project -I. -
/opt/Qt/5.9.9/gcc_64/include/QtCore/qvariant.h: In constructor ‘QVariant::QVariant(QVariant&&)’:
/opt/Qt/5.9.9/gcc_64/include/QtCore/qvariant.h:265:25: warning: implicitly-declared ‘constexpr QVariant::Private& QVariant::Private::operator=(const QVariant::Private&)’ is deprecated [-Wdeprecated-copy]
265 | { other.d = Private(); }
The best solution available is just to ignore it, Or upgrade to qt6.
To Ignore the warning, just add
QMAKE_CXXFLAGS += -Wno-deprecated-copy
In all of your .pro files.
This will ignore all the deprecated-copy warning; you can also ignore for debug or release build using QMAKE_CXXFLAGS_DEBUG or QMAKE_CXXFLAGS_RELEASE.
When I try to install the package mapdeck in Rstudio, it appears a message in the console saying that I need to install the package googlePolylines, but I can't install this one. The error that appears in the console is the following:
package ‘googlePolylines’ successfully unpacked and MD5 sums checked
libs
g++ -m64 -std=gnu++0x -I/usr/include/R -DNDEBUG -I../inst/include -I"/home/arubio/R/x86_64-redhat-linux-gnu-library/3.4/Rcpp/include" -I"/usr/lib64/R/library/BH/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c RcppExports.cpp -o RcppExports.o
g++ -m64 -std=gnu++0x -I/usr/include/R -DNDEBUG -I../inst/include -I"/home/arubio/R/x86_64-redhat-linux-gnu-library/3.4/Rcpp/include" -I"/usr/lib64/R/library/BH/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c encode.cpp -o encode.o
encode.cpp: In function ‘void encode_vector(std::ostringstream&, std::ostringstream&, Rcpp::List, Rcpp::CharacterVector&, int)’:
encode.cpp:175: error: conversion from ‘Rcpp::internal::generic_proxy<19, Rcpp::PreserveStorage>’ to ‘double’ is ambiguous
/home/arubio/R/x86_64-redhat-linux-gnu-library/3.4/Rcpp/include/Rcpp/vector/generic_proxy.h:73: note: candidates are: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19, StoragePolicy = Rcpp::PreserveStorage]
/home/arubio/R/x86_64-redhat-linux-gnu-library/3.4/Rcpp/include/Rcpp/vector/generic_proxy.h:72: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19, StoragePolicy = Rcpp::PreserveStorage]
/home/arubio/R/x86_64-redhat-linux-gnu-library/3.4/Rcpp/include/Rcpp/vector/generic_proxy.h:67: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19, StoragePolicy = Rcpp::PreserveStorage]
encode.cpp:176: error: conversion from ‘Rcpp::internal::generic_proxy<19, Rcpp::PreserveStorage>’ to ‘double’ is ambiguous
/home/arubio/R/x86_64-redhat-linux-gnu-library/3.4/Rcpp/include/Rcpp/vector/generic_proxy.h:73: note: candidates are: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19, StoragePolicy = Rcpp::PreserveStorage]
/home/arubio/R/x86_64-redhat-linux-gnu-library/3.4/Rcpp/include/Rcpp/vector/generic_proxy.h:72: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19, StoragePolicy = Rcpp::PreserveStorage]
/home/arubio/R/x86_64-redhat-linux-gnu-library/3.4/Rcpp/include/Rcpp/vector/generic_proxy.h:67: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19, StoragePolicy = Rcpp::PreserveStorage]
make: *** [encode.o] Error 1
ERROR: compilation failed for package ‘googlePolylines’
removing ‘/home/arubio/R/x86_64-redhat-linux-gnu-library/3.4/googlePolylines’
Warning in install.packages :
installation of package ‘googlePolylines’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpwwAJSv/downloaded_packages’
I haven't found almost any information about these two packages, so I would appreciate if anyone could help me, thank you.
I'm trying to install Rgdal package, all packages and their dependancies I've installed them manuelly since my server is offline, I have struggled with those dependancies for a long time. but now I think I fix the problem, but my problem now I think has came from R, I cannot even figure out what's happen. this is the out put I gut when I run the commande install.packages("rgdal_1.2-15.tar.gz","/usr/lib64/R/library/",repos=NULL,configure.args="--with-proj-include=/usr/proj49/include/") on R:
* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ successfully unpacked and MD5 sums checked
configure: CC: gcc -m64 -std=gnu99
configure: CXX: g++ -m64
configure: rgdal: 1.2-15
checking for /usr/bin/svnversion... no
configure: svn revision: 691
checking for gdal-config... /usr/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 1.8.1
checking GDAL version >= 1.6.3... yes
checking gdal: linking with --libs only... yes
checking GDAL: /usr/share/gdal/pcs.csv readable... yes
configure: -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fpic -fPIC -I/usr/proj49/include/
checking proj_api.h presence and usability... yes
checking PROJ.4 version: ... > 4.8.0
/usr/bin/ld: warning: libproj.so.12, needed by /usr/lib64/libogdi.so.3, may conflict with libproj.so.0
./configure: line 2112: 27095 Segmentation fault (core dumped) ./proj_conf_test2
checking PROJ.4: epsg found and readable... yes
/usr/bin/ld: warning: libproj.so.12, needed by /usr/lib64/libogdi.so.3, may conflict with libproj.so.0
./configure: line 2187: 27107 Segmentation fault (core dumped) ./proj_conf_test3
checking PROJ.4: conus found and readable... yes
configure: Package CPP flags: -I/usr/include/gdal -I/usr/proj49/include/
configure: Package LIBS: -lgdal -lproj
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -m64 -std=c++0x -I/usr/include/R -DNDEBUG -I/usr/include/gdal -I/usr/proj49/include/ -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c OGR_write.cpp -o OGR_write.o
g++ -m64 -std=c++0x -I/usr/include/R -DNDEBUG -I/usr/include/gdal -I/usr/proj49/include/ -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c gdal-bindings.cpp -o gdal-bindings.o
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/include/gdal -I/usr/proj49/include/ -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fpic -fPIC -c init.c -o init.o
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/include/gdal -I/usr/proj49/include/ -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fpic -fPIC -c inverser.c -o inverser.o
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/include/gdal -I/usr/proj49/include/ -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fpic -fPIC -c local_stubs.c -o local_stubs.o
g++ -m64 -std=c++0x -I/usr/include/R -DNDEBUG -I/usr/include/gdal -I/usr/proj49/include/ -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ogr_geom.cpp -o ogr_geom.o
ogr_geom.cpp: In function ‘SEXPREC* R_OGR_CAPI_features(SEXPREC*, SEXPREC*, SEXPREC*)’:
ogr_geom.cpp:39: warning: ‘mp_count_k0’ may be used uninitialized in this function
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/include/gdal -I/usr/proj49/include/ -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fpic -fPIC -c ogr_polygons.c -o ogr_polygons.o
g++ -m64 -std=c++0x -I/usr/include/R -DNDEBUG -I/usr/include/gdal -I/usr/proj49/include/ -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ogr_proj.cpp -o ogr_proj.o
g++ -m64 -std=c++0x -I/usr/include/R -DNDEBUG -I/usr/include/gdal -I/usr/proj49/include/ -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ogrdrivers.cpp -o ogrdrivers.o
g++ -m64 -std=c++0x -I/usr/include/R -DNDEBUG -I/usr/include/gdal -I/usr/proj49/include/ -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ogrsource.cpp -o ogrsource.o
ogrsource.cpp: In function ‘SEXPREC* ogrReadListColumn(OGRLayer*, SEXPREC*, int, int, int)’:
ogrsource.cpp:651: warning: unused variable ‘DINT_MAX’
ogrsource.cpp:652: warning: unused variable ‘DINT_MIN’
g++ -m64 -std=c++0x -I/usr/include/R -DNDEBUG -I/usr/include/gdal -I/usr/proj49/include/ -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c projectit.cpp -o projectit.o
g++ -m64 -std=c++0x -shared -L/usr/lib64/R/lib -o rgdal.so OGR_write.o gdal-bindings.o init.o inverser.o local_stubs.o ogr_geom.o ogr_polygons.o ogr_proj.o ogrdrivers.o ogrsource.o projectit.o -lgdal -lproj -L/usr/lib64/R/lib -lR
installing to /usr/lib64/R/library/rgdal/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package ‘rgdal’
finding HTML links ... done
CRS-class html
GDALDataset-class html
GDALDriver-class html
GDALMajorObject-class html
GDALRasterBand-class html
GDALReadOnlyDataset-class html
GDALReadOnlyDataset-methods html
GDALTransientDataset-class html
GridsDatums html
RGB2PCT html
SGDF2PCT html
SpatialGDAL-class html
closeDataset-methods html
displayDataset html
llgrid html
Rd warning: /tmp/RtmpKNPZgP/R.INSTALL68d7595014d0/rgdal/man/llgrid.Rd:11: missing file link ‘Spatial’
Rd warning: /tmp/RtmpKNPZgP/R.INSTALL68d7595014d0/rgdal/man/llgrid.Rd:16: missing file link ‘gridat’
Rd warning: /tmp/RtmpKNPZgP/R.INSTALL68d7595014d0/rgdal/man/llgrid.Rd:17: missing file link ‘gridat’
make_EPSG html
nor2k html
projInfo html
project html
readGDAL html
Rd warning: /tmp/RtmpKNPZgP/R.INSTALL68d7595014d0/rgdal/man/readGDAL.Rd:136: missing file link ‘flipVertical’
readOGR html
showWKT html
spTransform-methods html
wrappers html
writeOGR html
** building package indices
** installing vignettes
** testing if installed package can be loaded
sh: line 1: 28842 Segmentation fault (core dumped) '/usr/lib64/R/bin/R' --no-save --slave 2>&1 < '/tmp/RtmpKNPZgP/file68d75bc50ad1'
*** caught segfault ***
address 0x20, cause 'memory not mapped'
Traceback:
1: .Call("PROJ4_proj_def_dat_Installed", PACKAGE = "rgdal")
2: assign("has_proj_def.dat", .Call("PROJ4_proj_def_dat_Installed", PACKAGE = "rgdal"), envir = .RGDAL_CACHE)
3: fun(libname, pkgname)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(fun(libname, pkgname), error = identity)
8: runHook(".onLoad", env, package.lib, package)
9: loadNamespace(package, lib.loc)
10: doTryCatch(return(expr), name, parentenv, handler)
11: tryCatchOne(expr, names, parentenv, handlers[[1L]])
12: tryCatchList(expr, classes, parentenv, handlers)
13: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L msg <- conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = stderr()) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
14: try({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps)})
15: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)
16: withCallingHandlers(expr, packageStartupMessage = function(c) invokeRestart("muffleMessage"))
17: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))
18: doTryCatch(return(expr), name, parentenv, handler)
19: tryCatchOne(expr, names, parentenv, handlers[[1L]])
20: tryCatchList(expr, classes, parentenv, handlers)
21: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L msg <- conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = stderr()) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
22: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)))
23: tools:::.test_load_package("rgdal", "/usr/lib64/R/library")
An irrecoverable exception occurred. R is aborting now ...
ERROR: loading failed
* removing ‘/usr/lib64/R/library/rgdal’
Warning message:
In install.packages("rgdal_1.2-15.tar.gz", "/usr/lib64/R/library/", :
installation of package ‘rgdal_1.2-15.tar.gz’ had non-zero exit status
Update:
even with a newer version of Rgdal install.packages("rgdal_1.2-18.tar.gz","/usr/lib64/R/library/",repos=NULL,configure.args="--with-proj-include=/usr/proj49/include/"), I got the same error
Please follow the below steps to install gdal on RHEL/CentOS 7
wget http://download.osgeo.org/gdal/2.0.1/gdal-2.0.1.tar.gz
./configure
make
make install
I had previously installed qt4. Now, I have installed QT5.7. I am trying to compile the qmqtt project to generate the libqmqtt file. Qmake is fine. But make gives the following error.
Link:
https://github.com/emqtt/qmqtt
g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O2 -fvisibility=hidden -fvisibility-inlines-hidden -std=c++0x -fno-exceptions -Wall -W -D_REENTRANT -fPIC -DQT_NO_MTDEV -DQT_NO_CAST_TO_ASCII -DQT_NO_CAST_FROM_ASCII -DQT_BUILD_MQTT_LIB -DQT_BUILDING_QT -DQT_ASCII_CAST_WARNINGS -DQT_MOC_COMPAT -DQT_USE_QSTRINGBUILDER -DQT_DEPRECATED_WARNINGS -DQT_DISABLE_DEPRECATED_BEFORE=0x050000 -DQT_NO_EXCEPTIONS -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -DQT_NO_DEBUG -DQT_NETWORK_LIB -DQT_CORE_LIB -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/sm/qt_applications/qmqtt/qmqtt-master/src/mqtt -I/home/sm/qt_applications/qmqtt/qmqtt-master/src/mqtt -I/home/sm/qt_applications/qmqtt/qmqtt-master/include -I/home/sm/qt_applications/qmqtt/qmqtt-master/include/qmqtt -I../../include -I../../include/qmqtt -I/home/sm/qt_applications/qmqtt/qmqtt-master/include/qmqtt/1.0.0 -I/home/sm/qt_applications/qmqtt/qmqtt-master/include/qmqtt/1.0.0/qmqtt -I/usr/include/qt5 -I/usr/include/qt5/QtNetwork -I/usr/include/qt5/QtCore -I.moc -I. -o .obj/qmqtt_routedmessage.o /home/sm/qt_applications/qmqtt/qmqtt-master/src/mqtt/qmqtt_routedmessage.cpp
g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O2 -fvisibility=hidden -fvisibility-inlines-hidden -std=c++0x -fno-exceptions -Wall -W -D_REENTRANT -fPIC -DQT_NO_MTDEV -DQT_NO_CAST_TO_ASCII -DQT_NO_CAST_FROM_ASCII -DQT_BUILD_MQTT_LIB -DQT_BUILDING_QT -DQT_ASCII_CAST_WARNINGS -DQT_MOC_COMPAT -DQT_USE_QSTRINGBUILDER -DQT_DEPRECATED_WARNINGS -DQT_DISABLE_DEPRECATED_BEFORE=0x050000 -DQT_NO_EXCEPTIONS -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -DQT_NO_DEBUG -DQT_NETWORK_LIB -DQT_CORE_LIB -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/sm/qt_applications/qmqtt/qmqtt-master/src/mqtt -I/home/sm/qt_applications/qmqtt/qmqtt-master/src/mqtt -I/home/sm/qt_applications/qmqtt/qmqtt-master/include -I/home/sm/qt_applications/qmqtt/qmqtt-master/include/qmqtt -I../../include -I../../include/qmqtt -I/home/sm/qt_applications/qmqtt/qmqtt-master/include/qmqtt/1.0.0 -I/home/sm/qt_applications/qmqtt/qmqtt-master/include/qmqtt/1.0.0/qmqtt -I/usr/include/qt5 -I/usr/include/qt5/QtNetwork -I/usr/include/qt5/QtCore -I.moc -I. -o .obj/qmqtt_router.o /home/sm/qt_applications/qmqtt/qmqtt-master/src/mqtt/qmqtt_router.cpp
In file included from /usr/include/qt5/QtCore/qobjectdefs.h:47:0,
from /usr/include/qt5/QtCore/qobject.h:48,
from /usr/include/qt5/QtCore/QObject:1,
from /home/sm/qt_applications/qmqtt/qmqtt-master/src/mqtt/qmqtt_router.h:38,
from /home/sm/qt_applications/qmqtt/qmqtt-master/src/mqtt/qmqtt_router.cpp:33:
/usr/include/qt5/QtCore/qobjectdefs_impl.h: In instantiation of ‘struct QtPrivate::AreArgumentsCompatible<QMQTT::Message, QMQTT::Message>’:
/usr/include/qt5/QtCore/qobjectdefs_impl.h:599:21: required from ‘struct QtPrivate::CheckCompatibleArguments<QtPrivate::List<const QMQTT::Message&>, QtPrivate::List<const QMQTT::Message&> >’
/usr/include/qt5/QtCore/qobject.h:241:80: required from ‘static QMetaObject::Connection QObject::connect(const typename QtPrivate::FunctionPointer<Func>::Object*, Func1, const typename QtPrivate::FunctionPointer<Func2>::Object*, Func2, Qt::ConnectionType) [with Func1 = void (QMQTT::Client::*)(const QMQTT::Message&); Func2 = void (QMQTT::RouteSubscription::*)(const QMQTT::Message&); typename QtPrivate::FunctionPointer<Func>::Object = QMQTT::Client; typename QtPrivate::FunctionPointer<Func2>::Object = QMQTT::RouteSubscription]’
/home/sm/qt_applications/qmqtt/qmqtt-master/src/mqtt/qmqtt_router.cpp:52:87: required from here
/usr/include/qt5/QtCore/qobjectdefs_impl.h:573:42: error: invalid use of incomplete type ‘class QMQTT::Message’
enum { value = sizeof(test(dummy())) == sizeof(int) };
^
In file included from /home/sm/qt_applications/qmqtt/qmqtt-master/src/mqtt/qmqtt_router.cpp:35:0:
/home/sm/qt_applications/qmqtt/qmqtt-master/src/mqtt/qmqtt_client.h:95:7: error: forward declaration of ‘class QMQTT::Message’
class Message;
^
In file included from /home/sm/qt_applications/qmqtt/qmqtt-master/src/mqtt/qmqtt_global.h:35:0,
from /home/sm/qt_applications/qmqtt/qmqtt-master/src/mqtt/qmqtt_router.h:36,
from /home/sm/qt_applications/qmqtt/qmqtt-master/src/mqtt/qmqtt_router.cpp:33:
/usr/include/qt5/QtCore/qobject.h: In instantiation of ‘static QMetaObject::Connection QObject::connect(const typename QtPrivate::FunctionPointer<Func>::Object*, Func1, const typename QtPrivate::FunctionPointer<Func2>::Object*, Func2, Qt::ConnectionType) [with Func1 = void (QMQTT::Client::*)(const QMQTT::Message&); Func2 = void (QMQTT::RouteSubscription::*)(const QMQTT::Message&); typename QtPrivate::FunctionPointer<Func>::Object = QMQTT::Client; typename QtPrivate::FunctionPointer<Func2>::Object = QMQTT::RouteSubscription]’:
/home/sm/qt_applications/qmqtt/qmqtt-master/src/mqtt/qmqtt_router.cpp:52:87: required from here
/usr/include/qt5/QtCore/qglobal.h:669:47: error: static assertion failed: Signal and slot arguments are not compatible.
#define Q_STATIC_ASSERT_X(Condition, Message) static_assert(bool(Condition), Message)
^
/usr/include/qt5/QtCore/qobject.h:228:9: note: in expansion of macro ‘Q_STATIC_ASSERT_X’
Q_STATIC_ASSERT_X((QtPrivate::CheckCompatibleArguments<typename SignalType::Arguments, typename SlotType::Arguments>::value),
^
make[2]: *** [.obj/qmqtt_router.o] Error 1
make[2]: Leaving directory `/home/sm/qt_applications/qmqtt/qmqtt-master/build/src/mqtt'
make[1]: *** [sub-mqtt-make_first] Error 2
make[1]: Leaving directory `/home/sm/qt_applications/qmqtt/qmqtt-master/build/src'
make: *** [sub-src-make_first] Error 2
Spent a lot of time. After compiling by Qt 5.7.0, there was no Dll-files in the folder "release". I looking at the compilation log and I saw that there was created the folder "lib" in the root of the disk with the project, there I found Dll. But work with DLL allows you to work on Windows. I need on Android.
In github someone suggests just use it as plain code.
I rewrite it to "plain code" and made example-project. It is here. There is two folders: project and mosquitto for using mqtt on localhost