CloudFormation Template not able to install R related packages - r

I am trying to create an EC2 instance through CloudFormation template where I am trying to install Zeppelin,Spark & R as shown here...now I want to install R related packages..so in the "Install" section,my template looks as follows:
"AWS::CloudFormation::Init" : {
"configSets" : {
"InstallAndRun" : [ "Install", "Configure" ]
},
"Install" : {
"packages" : {
"yum" : {
"git" : [],
"java-1.7.0-openjdk-devel.x86_64": [],
"R R-devel": [],
"libpng" : [],
"libpng-devel" : [],
"curl curl-devel" : [],
"libxml2 libxml2-devel" : []
}
},
But it is only able to install git & java....i saw in the logs where the error message was "Unhandled exception during build: Yum does not have libxml2 libxml2-devel available for installation" ..so what needs to be done for that ?? What are the packages required for installing R via CloudFormation ??

You are using invalid syntax. Each yum package needs to be specified separately, so change:
"R R-devel": [],
"curl curl-devel" : [],
"libxml2 libxml2-devel" : []
to something like:
"R": [],
"R-devel": [],
"curl": [],
"curl-devel": [],
"libxml2": [],
"libxml2-devel": []

This is probably because these packages are not in the base yum repo. You can find them in the EPEL yum repo. Try passing --enablerepo=epel when you install these packages.

Related

Swift Package Manager: commit in project's sub-dependency doesn't appear in package code

I have a project which uses a dependency (Lib), which contains a sub-dependency (Utilities). I have just updated this sub-dependency, adding some code, but I can't see it from my project.
Here is the dependency declared in my project:
The Package in Lib, with the dependency to Utilities:
// swift-tools-version: 5.6
import PackageDescription
let package = Package(
name: "Lib",
defaultLocalization: "en",
platforms: [
.iOS("12.1")
],
products: [
.library(name: "Lib",
targets: ["Lib"])
],
dependencies: [
.package(url: "git#bitbucket.org:__UTILITIES__.git", branch: "development")
],
targets: [
.target(name: "Lib",
dependencies: [
.product(name: "Utilities",
package: "__UTILITIES__")
],
path: "code"
]
)
__UTILITIES__ is the utilities repo
I have committed and pushed the new code in Utilities's repo, on development branch. However, whatever I try (either resetting package caches, or updating to latest package versions), I never actually get my latest code from my project.
Am I missing something?
Thank you for your help

How do I update Drupal 9 from ssh command line on OVH server?

I installed Drupal in one click on a OVH server. First bad surprise: I discovered that the installed version 9.1.9 needs a security update to 9.2.9.
Second bad surprise: drush was not installed by default. So I had to install first composer in order to install drush with the command:
curl -sS https://getcomposer.org/installer | php
After some battles, composer was working. I installed drush issuing command:
composer require --dev drush/drush
Probably, the --dev flag was not necessary.
I see that composer is able to list the available updates of drupal by running:
composer show drupal/recommended-project --all
name : drupal/recommended-project
descrip. : Project template for Drupal 9 projects with a relocated document root
keywords :
versions : 9.4.x-dev, 9.3.x-dev, 9.3.0-beta2, 9.3.0-beta1, 9.3.0-alpha1, 9.2.x-dev, 9.2.9, 9.2.8, 9.2.7, 9.2.6, 9.2.5, 9.2.4, 9.2.3, 9.2.2, 9.2.1, 9.2.0, 9.2.0-rc1, 9.2.0-beta3, 9.2.0-beta2, 9.2.0-beta1, 9.2.0-alpha1, 9.1.x-dev, 9.1.14, 9.1.13, 9.1.12, 9.1.11, 9.1.10, 9.1.9, 9.1.8, 9.1.7, 9.1.6, 9.1.5, 9.1.4, 9.1.3, 9.1.2, 9.1.1, 9.1.0, 9.1.0-rc3, 9.1.0-rc2, 9.1.0-rc1, 9.1.0-beta1, 9.1.0-alpha1, 9.0.x-dev, 9.0.14, 9.0.13, 9.0.12, 9.0.11, 9.0.10, 9.0.9, 9.0.8, 9.0.7, 9.0.6, 9.0.5, 9.0.4, 9.0.3, 9.0.2, 9.0.1, 9.0.0, 9.0.0-rc1, 9.0.0-beta3, 9.0.0-beta2, 9.0.0-beta1, 9.0.0-alpha2, 9.0.0-alpha1, 8.9.x-dev, 8.9.20, 8.9.19, 8.9.18, 8.9.17, 8.9.16, 8.9.15, 8.9.14, 8.9.13, 8.9.12, 8.9.11, 8.9.10, 8.9.9, 8.9.8, 8.9.7, 8.9.6, 8.9.5, 8.9.4, 8.9.3, 8.9.2, 8.9.1, 8.9.0, 8.9.0-rc1, 8.9.0-beta3, 8.9.0-beta2, 8.9.0-beta1, 8.8.x-dev, 8.8.12, 8.8.11, 8.8.10, 8.8.9, 8.8.8, 8.8.7, 8.8.6, 8.8.5, 8.8.4, 8.8.3, 8.8.2, 8.8.1, 8.8.0, 8.8.0-rc1, 8.8.0-beta1, 8.8.0-alpha1
type : project
license : GNU General Public License v2.0 or later (GPL-2.0-or-later) (OSI approved) https://spdx.org/licenses/GPL-2.0-or-later.html#licenseText
homepage : https://www.drupal.org/project/drupal
source : [git] https://github.com/drupal/recommended-project.git 7f83a471aca47ffaa981bc8cb8a0cf615163ae5b
dist : [zip] https://api.github.com/repos/drupal/recommended-project/zipball/7f83a471aca47ffaa981bc8cb8a0cf615163ae5b 7f83a471aca47ffaa981bc8cb8a0cf615163ae5b
names : drupal/recommended-project
support
chat : https://www.drupal.org/node/314178
docs : https://www.drupal.org/docs/user_guide/en/index.html
source : https://github.com/drupal/recommended-project/tree/9.4.x
requires
composer/installers ^1.9
drupal/core-composer-scaffold ^9.4
drupal/core-project-message ^9.4
drupal/core-recommended ^9.4
requires (dev)
drupal/core-dev ^9.4
conflicts
drupal/drupal *
My problem is that I installed drupal/drupal that is apparently conflicting with drupal/recommended-project where I see the upgrade of drupal I need.
What should be the next step to upgrade from Drupal 9.1.9 to Drupal 9.2.9? Sorry if this question is trivial, but I am overwhelmed with a huge documentation where I get lost.
UPDATE: this is the composer.json file I found in my home directory:
{
"require-dev": {
"drush/drush": "^10.6"
}
}
And UPDATE2: this is the composer.json file I found in the Drupal root directory:
{
"name": "drupal/legacy-project",
"description": "Project template for Drupal 9 projects with composer following drupal/drupal layout",
"type": "project",
"license": "GPL-2.0-or-later",
"homepage": "https://www.drupal.org/project/drupal",
"support": {
"docs": "https://www.drupal.org/docs/user_guide/en/index.html",
"chat": "https://www.drupal.org/node/314178"
},
"repositories": [
{
"type": "composer",
"url": "https://packages.drupal.org/8"
}
],
"require": {
"composer/installers": "^1.9",
"drupal/core-composer-scaffold": "^9.1",
"drupal/core-project-message": "^9.1",
"drupal/core-recommended": "^9.1",
"drupal/core-vendor-hardening": "^9.1"
},
"conflict": {
"drupal/drupal": "*"
},
"minimum-stability": "stable",
"prefer-stable": true,
"config": {
"sort-packages": true
},
"extra": {
"drupal-scaffold": {
"locations": {
"web-root": "./"
}
},
"installer-paths": {
"core": [
"type:drupal-core"
],
"libraries/{$name}": [
"type:drupal-library"
],
"modules/contrib/{$name}": [
"type:drupal-module"
],
"profiles/contrib/{$name}": [
"type:drupal-profile"
],
"themes/contrib/{$name}": [
"type:drupal-theme"
],
"drush/Commands/contrib/{$name}": [
"type:drupal-drush"
],
"modules/custom/{$name}": [
"type:drupal-custom-module"
],
"profiles/custom/{$name}": [
"type:drupal-custom-profile"
],
"themes/custom/{$name}": [
"type:drupal-custom-theme"
]
},
"drupal-core-project-message": {
"include-keys": [
"homepage",
"support"
],
"post-create-project-cmd-message": [
"<bg=blue;fg=white> </>",
"<bg=blue;fg=white> Congratulations, you’ve installed the Drupal codebase </>",
"<bg=blue;fg=white> from the drupal/legacy-project template! </>",
"<bg=blue;fg=white> </>",
"",
"<bg=yellow;fg=black>Next steps</>:",
" * Install the site: https://www.drupal.org/docs/8/install",
" * Read the user guide: https://www.drupal.org/docs/user_guide/en/index.html",
" * Get support: https://www.drupal.org/support",
" * Get involved with the Drupal community:",
" https://www.drupal.org/getting-involved",
" * Remove the plugin that prints this message:",
" composer remove drupal/core-project-message"
]
}
}
}
If your project is new you can do some actions to be on the last version of drupal.
To avoid any conflicts you have to :
rm -rf /vendor
rm composer.lock (this file fix the versions of your dependencies)
then
composer update
It will install last version of every dependencies.
In case if you just want to update drupal dependencies do (without delete composer.lock and /vendor) :
composer update drupal/core-recommended --with-dependencies
I use the inital installation of composer/drush/drupal like this.
The drush part is the important.
composer
PATH=/Applications/MAMP/Library/bin:/Applications/MAMP/bin/php/php7.4.2/bin:$PATH
php -r "copy('https://getcomposer.org/installer', 'composer-setup.php');"
php -r "if (hash_file('sha384', 'composer-setup.php') === '906a84df04cea2aa72f40b5f787e49f22d4c2f19492ac310e8cba5b96ac8b64115ac402c8cd292b8a03482574915d1a8') { echo 'Installer verified'; } else { echo 'Installer corrupt'; unlink('composer-setup.php'); } echo PHP_EOL;"
php composer-setup.php
php -r "unlink('composer-setup.php');"
sudo mv composer.phar /usr/local/bin/composer
PATH="$(composer config -g home)/vendor/bin:$PATH"
drush
cd /drushproject/web/
composer require drupal/console:~1.0 --prefer-dist --optimize-autoloader
composer global require consolidation/cgr
cgr drush/drush
# correct DrushLog problems (alternatively run once: drush cr)
composer require drush/drush
drupal
drupal --root=/drushproject/web/

Error: Failed to load config "next" to extend from

I have a Nextjs app using jest and react-testing-library for the test, I add the .eslintrc file with npx .eslintrc --init command to my project.
whenever I lint my project, I get the following error:
.eslintrc.js:
module.exports = {
"extends": [
"eslint:recommended",
"plugin:react/recommended",
"plugin:#typescript-eslint/recommended",
"plugin:#typescript-eslint/recommended-requiring-type-checking",
"next",
"next/core-web-vitals"
],
"parser": "#typescript-eslint/parser",
"parserOptions": {
"project":"./tsconfig.json",
"ecmaFeatures": {
"jsx": true
},
"ecmaVersion": 12,
"sourceType": "module"
},
"rules": {
}
};
and error:
info - Using webpack 5. Reason: Enabled by default https://nextjs.org/docs/messages/webpack5
Error: Failed to load config "next" to extend from.
Referenced from: D:\web\reactjs\react-testing\react-testing-app\.eslintrc.js
Resolved, after installing this package, the code will run without error:
npm i --save-dev eslint-config-next
For a misterious reason running npm audit fix --force changed my package.json from:
"eslint-config-next": "12.0.1"
to:
"eslint-config-next": "^0.2.4"
I had to change it manually and the error went away.

Fresh install of Trellis by Roots on Ubuntu & VituralBox is missing composer.json under /srv/www/website.com/current

This is the error message I got when I first run 'vagrant provision' (after command 'vagrant up' blocked in 'Mounting NFS shared folders...') under the trellis directory:
TASK [wordpress-install : Install Dependencies with Composer] ******************
System info:
Ansible 2.9.11; Vagrant 2.2.9; Linux
Trellis version (per changelog): "Removes ID from Lets Encrypt bundled certificate and make filename stable"
---------------------------------------------------
Composer could not find a composer.json file in /srv/www/example.com/current
To initialize a project, please create a composer.json file
as described in the https://getcomposer.org/ "Getting Started"
section failed: [default] (item=example.com) =>
{
"ansible_loop_var": "item",
"changed": false,
"item": {
"key": "example.com",
"value": {
"admin_email": "admin#example.test",
"cache": {
"enabled": false
},
"local_path": "../site",
"multisite": {
"enabled": false
},
"site_hosts": [
{
"canonical": "example.test",
"redirects": [
"www.example.test"
]
}
],
"ssl": {
"enabled": false,
"provider": "self-signed"
}
}
},
"stdout": "Composer could not find a composer.json file in /srv/www/example.com/current\nTo initialize a project, please create a composer.json file as described in the https://getcomposer.org/ \"Getting Started\" section\n",
"stdout_lines": [
"Composer could not find a composer.json file in /srv/www/example.com/current",
"To initialize a project, please create a composer.json file as described in the https://getcomposer.org/ \"Getting Started\" section"
]
}
PLAY RECAP *********************************************************************
default : ok=125 changed=83 unreachable=0 failed=1 skipped=34 rescued=0 ignored=0
Ansible failed to complete successfully. Any error output should be
visible above. Please fix these errors and try again.
How do I fix this? Where to find the right composer.json for Trellis, Bedrock, and Sage for local development on Linux?
Ubuntu 19.10

Nginx-passenger RVM cookbook chef

Unable to setup nginx-passenger module using chef-solo.. Phusion passenger compile issue.
cookbook 'rvm', '~> 0.9.2'
cookbook 'nginx', '~> 2.7.4'
i have gone through solutions in other similar threads,, but no success yet... any help is highly appreciated..
My Configuration
{
"name": "nginx-server",
"description": "Nginx server",
"default_attributes": {
"rvm": {
"default_ruby":"ruby-2.1.2",
"gems": {
"2.1.2": [
{"name": "bundler"},
{"name": "passenger"},
{"name": "rake"}
]
}
},
"nginx": {
"version": "1.4.1",
"dir" : "/etc/nginx",
"log_dir" : "/var/log/nginx",
"binary": "/opt/nginx-1.4.1/sbin",
"user" : "www-data",
"init_style" : "init",
"source" :{
"modules" : [
"nginx::http_stub_status_module",
"nginx::http_gzip_static_module",
"nginx::passenger"
]
},
"passenger" : {
"version": "3.0.21",
"ruby" : "/usr/local/rvm/rubies/ruby-2.1.2/bin/ruby",
"root" : "/usr/local/rvm/gems/ruby-2.1.2/gems/passenger-3.0.21"
}
}
},
"json_class": "Chef::Role",
"run_list": [
"rvm::system",
"rvm::gem_package",
"nginx::source",
"monit_configs-tlq::nginx"
],
"chef_type": "role",
"override_attributes": {
}
}
Error message: Phusion Passenger support files are not yet compiled. Compiling them for you
adding module in /usr/local/rvm/gems/ruby-2.1.2/gems/passenger-3.0.21/ext/nginx
*** The Phusion Passenger support files are not yet compiled. Compiling them for you... ***
*** Running 'rake nginx RELEASE=yes' in /usr/local/rvm/gems/ruby-2.1.2/gems/passenger-3.0.21/ext/nginx... ***
STDERR: /opt/chef/embedded/bin/rake:9:in `require': no such file to load -- rubygems (LoadError)
from /opt/chef/embedded/bin/rake:9
---- End output of "bash" "/tmp/chef-script20141016-27177-1eqrpme" ----
Ran "bash" "/tmp/chef-script20141016-27177-1eqrpme" returned 1
[2014-10-16T20:45:43+00:00] FATAL: Chef::Exceptions::ChildConvergeError: Chef run process exited unsuccessfully (exit code 1)
ERROR: RuntimeError: chef-solo failed. See output above.
Any idea to solve this,, will be of great help... :)
Many Thanks
Dave
The problem is that you are trying to use the ruby binary from RVM but your path is still setup to use other scripts from the Chef omnibus install. The trace shows rake running the the omnibus folder but ruby from RVM. Fix the PATH environment variable used for the bash recipe or source the RVM shell config in the bash code before running rake. This will likely require forking the above cookbooks unless they have explicit support for each other.

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