I am trying to install R packages in ubuntu 14.04. All other packages installed successfully, but 'dplyr' package failed to install.
I used the command below:
sudo su - -c "R -e \"install.packages('dplyr', repos = 'http://cran.rstudio.com/')\""
....
ERROR: compilation failed for package ‘dplyr’
* removing ‘/usr/local/lib/R/site-library/dplyr’
The downloaded source packages are in
‘/tmp/RtmpiKWYoQ/downloaded_packages’
Warning message:
In install.packages("dplyr", repos = "http://cran.rstudio.com/") :
installation of package ‘dplyr’ had non-zero exit status
R version 3.2.4 Revised
Related
Got a new company laptop and tried to install tidyr or installr, but it always fails because of magrittr.
If I want to install this package directly I'm getting the following error code:
* installing *source* package 'magrittr' ...
** package 'magrittr' successfully unpacked and MD5 sums checked
** libs
*** arch - i386
Warning: running command 'make -f "C:/PROGRA~1/R/R-33~1.1/etc/i386/Makeconf" -f "C:/PROGRA~1/R/R-33~1.1/share/make/winshlib.mk" SHLIB="magrittr.dll" OBJECTS="pipe.o utils.o"' had status 127
ERROR: compilation failed for package 'magrittr'
* removing 'C:/Users/xxxx/Documents/R/win-library/3.3/magrittr'
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-33~1.1/bin/x64/R" CMD INSTALL -l "C:\Users\xxxx\Documents\R\win-library\3.3" C:\Users\xxxx\AppData\Local\Temp\1\RtmpMHlNI9/downloaded_packages/magrittr_2.0.1.tar.gz' had status 1
Warning in install.packages :
installation of package ‘magrittr’ had non-zero exit status
I don't have admin privileges on this computer and could imagine that this could be the source of the problem, but I'm not sure.
What I tried:
Changed folder for libraries
Reinstalled all libraries
Tried different cron repos
Tried to install it on this way: install.packages("magrittr", update.packages(checkBuilt = TRUE))
Always the same error.
Is there any other way to install it?
Installing an archived version from source will work.
install.packages("cran.r-project.org/src/contrib/Archive/magrittr/…", repos = NULL, type="source")
You can utilize conda to install it:
conda install -c r r-magrittr
Reference:
https://anaconda.org/r/r-magrittr
Hello I am using R with Ubuntu 18.0.4 and having trouble to install packages. I have installed
sudo apt-get install libcurl4-openssl-dev
but still it produces the following error
installing source package ‘labelled’ ...
package ‘labelled’ successfully unpacked and MD5 sums checked
R
inst
preparing package for lazy loading
Warning: S3 methods ‘[.fun_list’, ‘[.grouped_df’, ‘all.equal.tbl_df’, ‘anti_join.data.frame’, ‘anti_join.tbl_df’, ‘arrange.data.frame’, ‘arrange.default’, ‘arrange.grouped_df’, ‘arrange.tbl_df’, ‘arrange_.data.frame’, ‘arrange_.tbl_df’, ‘as.data.frame.grouped_df’, ‘as.data.frame.rowwise_df’, ‘as.data.frame.tbl_cube’, ‘as.data.frame.tbl_df’, ‘as.table.tbl_cube’, ‘as.tbl.data.frame’, ‘as.tbl.tbl’, ‘as.tbl_cube.array’, ‘as.tbl_cube.data.frame’, ‘as.tbl_cube.matrix’, ‘as.tbl_cube.table’, ‘as_data_frame.grouped_df’, ‘as_data_frame.tbl_cube’, ‘auto_copy.tbl_cube’, ‘auto_copy.tbl_df’, ‘cbind.grouped_df’, ‘collapse.data.frame’, ‘collect.data.frame’, ‘common_by.NULL’, ‘common_by.character’, ‘common_by.default’, ‘common_by.list’, ‘compute.data.frame’, ‘copy_to.DBIConnection’, ‘copy_to.src_local’, ‘default_missing.data.frame’, ‘default_missing.default’, �� [... truncated]
Error in library.dynam(lib, package, package.lib) :
shared object ‘dplyr.so’ not found
ERROR: lazy loading failed for package ‘labelled’
removing ‘/home/sami/R/x86_64-pc-linux-gnu-library/3.4/labelled’
The downloaded source packages are in
‘/tmp/RtmpZbHxk1/downloaded_packages’
Warning message:
In install.packages("labelled") :
installation of package ‘labelled’ had non-zero exit status
Try installing the following libraries: libxml2-dev, libssl-dev and libcurl4-openssl-dev. Try to install them all using the apt command.
Greetings!
R version 3.2.1
I downloaded gpclib_1.5-5.tar.gz from http://cran.r-project.org/web/packages/gpclib/index.html and attempted to install the package with
install.packages("D:/GIS/gpclib_1.5-5.tar.gz", repos = NULL, type = "source")
I get the error
* installing *source* package 'gpclib' ...
** package 'gpclib' successfully unpacked and MD5 sums checked
** libs
*** arch - i386
Warning: running command 'make -f "D:/R/R-3.2.1/etc/i386/Makeconf" -f "D:/R/R-3.2.1/share/make/winshlib.mk" SHLIB="gpclib.dll" OBJECTS="Rgpc.o gpc.o"' had status 127
ERROR: compilation failed for package 'gpclib'
* removing 'D:/R/R-3.2.1/library/gpclib'
Warning in install.packages :
running command '"D:/R/R-3.2.1/bin/x64/R" CMD INSTALL -l "D:\R\R-3.2.1\library" "D:/GIS/gpclib_1.5-5.tar.gz"' had status 1
Warning in install.packages :
installation of package ‘D:/GIS/gpclib_1.5-5.tar.gz’ had non-zero exit status
How do I troubleshoot this?
Extra Information
I am ultimately trying to create heat maps, and am following this tutorial
http://spatialanalysis.co.uk/wp-content/uploads/2013/04/james_cheshire_ggplot_intro_blog.pdf
You'll need to install Rtools to install the R compiler libraries:
http://cran.r-project.org/bin/windows/Rtools/
Otherwise, R will have issues compiling from source code.
I tried to install ggplot2 with following commands, but it can't install.
> library('ggplot2')
Error in library("ggplot2") : there is no package called ‘ggplot2’\
> install.packages('ggplot2', dependencies = T)
package ‘ggplot2’ is available as a source package but not as a binary
Warning in install.packages :
package ‘ggplot2’ is not available (as a binary package for R version 3.1.3)
>
Can you anybody advise what's going wrong?
When i use the command install.packages("ggplot2", type="source",dependencies = TRUE) I got following error
*** arch - i386
Warning: running command 'make -f "D:/R/R-31~1.3/etc/i386/Makeconf" -f "D:/R/R-31~1.3/share/make/winshlib.mk" SHLIB="acepack.dll" SHLIB_LIBADD='$(FLIBS)' OBJECTS="ace.o avas.o rlsmo.o"' had status 127
ERROR: compilation failed for package 'acepack'
* removing 'D:/R/R-3.1.3/library/acepack'
Warning in install.packages :
running command '"D:/R/R-31~1.3/bin/x64/R" CMD INSTALL -l "D:\R\R-3.1.3\library" C:\Users\surjya\AppData\Local\Temp\RtmpWyq9oh/downloaded_packages/acepack_1.3-3.3.tar.gz' had status 1
Warning in install.packages :
installation of package ‘acepack’ had non-zero exit status
Sometimes the mirrors take a long time to update, and they don't pick up the binaries of a package for a few days.
Try install.packages("ggplot2", type="source")
...which, from memory, often works on Windows.
While trying to install the 'Rook' package in R i'm getting the following error:
** package ‘Rook’ successfully unpacked and MD5 sums checked
** libs
sh: 1: -f: not found
ERROR: compilation failed for package ‘Rook’
* removing ‘/usr/lib/R/site-library/Rook’
The downloaded packages are in
‘/tmp/RtmpPW6kC2/downloaded_packages’
Warning message:
In install.packages("Rook", repos = "http://cran.r-project.org") :
installation of package ‘Rook’ had non-zero exit status
I used both the install.packages() function and the terminal to install the package, but received the same message. Any ideas?
OS: Ubuntu 12.04.