How can I compare this 2 big files in unix.
I've already tried using 'grep -Fxvf file1.txt file2.txt | wc -l' but the output is 2,000,480 and when switching file1 and file2 the output is 1,999,999.
How can I get the output of '480' because that's what i am expecting.
I've also tried using diff/cmp commands but the output is too complicated.
I think you want an absolute value of a difference in line numbers in 2 files. You can achieve it easily with awk and get a decent result. You'd read numbers of lines in an array and later subtract the array values in the END block. For pure shell it'd have to get more complex. Imagine you get some test data generated (10 and 14 line files):
$ seq 1 10 > ten
$ seq 1 14 > fourteen
And then you do:
$ ( wc -l ten ; wc -l fourteen ) | awk '{ print $1}' | sort -rn | xargs -J % echo % - p | dc
The result:
4
But much better way would be do just do it in 3 lines (get word count for file1, then file2 and then subtract)
Related
Is it possible to count the occurrence of each word like using uniq -c but with the count after the word rather than before?
Example scenario
Input file named as text1.txt which contain the following data
Renault:cilo:84563
Renault:cilo:84565
M&M:Thar:84566
Tata:nano:84567
M&M:quanto:84568
M&M:quanto:84569
The fields used in the above data are car_company:car_model:customerID
Desired result
cilo 2
Thar 1
nano 1
quanto 2
(car_model and number of cars sold grouped by car_model)
My code
cat test1.txt | cut -d: -f2 | uniq -c
Actual Result
2 cilo
1 Thar
1 nano
2 quanto
Is it possible to do the above process without using uniq -c ,so that I can swap the order of the fields (columns)?
You can use uniq, and simply post-process its output to swap the columns:
cut -d: -f2 test1.txt | uniq -c | awk '{print $2 "\t" $1 "\n" }'
EDIT: Added \n, as noted in a comment.
Save your commands output into a file "badresult";
cat test1.txt | cut -d: -f2 | uniq -c > badresult
Then cut the seventh field and save it into a file named "counts"(you should use space(" ") as a seperator);
cut -d" " -f7 badresult > counts
Then cut the eighth field and save it into a file named "models"(you should use space(" ") as a seperator);
cut -d" " -f8 badresult > models
Now you have your counts and models in seperate files. All you have to do is to show these two files seperately with "pr" command(-m: one file per column, -T:no pre-information)
pr -m -T models counts
Using awk:
cat test1.txt | cut -d: -f2 | uniq -c | awk '{ t = $1; $1 = $2; $2 = t; print }'
The little awk code exchanges fields 1 and 2 using a temporary.
You just need awk for this:
$ awk -F: '{a[$2]++} END {for (i in a) print i, a[i]}' file
cilo 2
quanto 2
nano 1
Thar 1
This goes through every line keeping track of how many times the second field has appeared. Since everything is stored in the array a, then it is just a matter of looping through it and printing its content.
Let's say I have a file like this with 2 columns
56-cde
67-cde
56-cao
67-cgh
78-xyz
456-hhh
456-jjjj
45678-nnmn
45677-abdc
45678-aief
I am trying to get an output like this:
56-cde
56-cao
67-cde
67-cgh
456-hhh
456-jjjj
45678-aief
45678-nnmn
So basically instead of printing out the unique values I need to print the duplicates:
I tried to accomplish this using awk like this :
cat input.txt | awk -F"-" '{print $1,$2}' | sort -n | uniq -w 2 -D
This is without doubt showing me what values in column 1 have been duplicated, and also displaying the duplicated values of column 1 along with the respective column 2 values. But since I am hardcoding the number of bytes to 2, it displays the duplicated values only for the 2 digit numbers in column one. Is there a way to do this using awk ?
Thanks in advance.
See if your uniq has a -D option. My cygwin version does:
cat input.txt | sort | uniq -w 2 -D
another awk solution without arrays (but with presort)
sort -n file | awk -F- '
NR==1{p=$1; a=$0; c++; next}
p==$1{a=a RS $0; c++; next}
c{print a}
{a=$0; p=$1; c=0}
END{if(c) print a}'
This is what I came up with (just an awk program, no external sort, uniq etc.):
BEGIN { FS = "-" }
{ arr[$1] = arr[$1] "-" $2 }
END {
for (i in arr) {
if ((n = split(arr[i], a)) < 3) continue
for (j = 2; j <= n; ++j)
print i"-"a[j]
}
}
It collects all numbers along with the different strings attached
in arr (assuming the strings won't contain dashes -).
With gawk, you could use arrays of arrays in order to avoid the concatenation and splitting with dashes.
I would handle the varying-number-of-digits case by pre-conditioning the data so that the number field is a fixed large width (and use that width in uniq):
cat input.txt | awk -F- '{printf "%12d-%s\n",$1,$2}'| sort | uniq -w 12 -D
If you need the output left-justified as well, just tack on this post-conditioning step:
| awk '{print $1}'
Using Perl
$ cat two_cols.txt
56-cde
67-cde
56-cao
67-cgh
78-xyz
456-hhh
456-jjjj
45678-nnmn
45677-abdc
45678-aief
$ perl -F"-" -lane ' #t=#{$kv{$F[0]}}; push(#t,$_); $kv{$F[0]}=[#t]; END { while(($x,$y)=each(%kv)){ print join("\n",#{$y}) if scalar #{$y}>1 }} ' two_cols.txt
67-cde
67-cgh
56-cde
56-cao
456-hhh
456-jjjj
45678-nnmn
45678-aief
$
I needed to extract all hits from one list (list.txt) which can be found in one of the columns of another (here in Data.txt) into a third (output.txt).
Data.txt (tab delimited)
some_data more_data other_data here yet_more_data etc
A B 2 Gee;Whiz;Hello 13 12
A B 2 Gee;Whizz;Hi 56 32
E 4 Btm;Lol 16 2
T 3 Whizz 13 3
List.txt
Gee
Whiz
Lol
Ideally output.txt looks like
some_data more_data other_data here yet_more_data etc
A B 2 Gee;Whiz;Hello 13 12
A B 2 Gee;Whizz;Hi 56 32
E 4 Btm;Lol 16 2
So I tried a shell script
for ids in List.txt
do
grep $ids Data.txt >> output.txt
done
except I typed out everything (cut and paste actually) in List.txt in said script.
Unfortunately it gave me an output.txt including the last line, I assume as 'Whizz' contains 'Whiz'.
I also tried cat Data.txt | egrep -F "List.txt" and that resulted in grep: conflicting matchers specified -- I suppose that was too naive of me. The actual files: List.txt contains a sorted list of 985 words, Data.txt has 115576 rows with 17 columns.
Some help/guidance would be much appreciated thanks.
Try something like this:
for ids in List.txt
do
grep "[TAB;]$ids[TAB;]" Data.txt >> output.txt
done
But it has two drawbacks:
"Data.txt" is scanned multiple times
You can get one line multiple times.
If it is problem try two step version:
cat List.txt | sed -e "s/.*/[TAB;]\0[TAB;]/g" > List_mod.txt
grep -f List_mod.txt Data.txt > output.txt
Note:
TAB character can be inserted by combination Ctrl-V following by Tab key in command line, and Tab character in editor. You have to check if your edit does not change tab to series of spaces.
The UNIX tool for general text processing is "awk":
awk '
NR==FNR { list[$0]; next }
{
for (word in list) {
if ($0 ~ "[\t;]" word "[\t;]") {
print
next
}
}
}
' List.txt Data.txt > output.txt
What's the easiest/quickest way to interleave the lines of two (or more) text files? Example:
File 1:
line1.1
line1.2
line1.3
File 2:
line2.1
line2.2
line2.3
Interleaved:
line1.1
line2.1
line1.2
line2.2
line1.3
line2.3
Sure it's easy to write a little Perl script that opens them both and does the task. But I was wondering if it's possible to get away with fewer code, maybe a one-liner using Unix tools?
paste -d '\n' file1 file2
Here's a solution using awk:
awk '{print; if(getline < "file2") print}' file1
produces this output:
line 1 from file1
line 1 from file2
line 2 from file1
line 2 from file2
...etc
Using awk can be useful if you want to add some extra formatting to the output, for example if you want to label each line based on which file it comes from:
awk '{print "1: "$0; if(getline < "file2") print "2: "$0}' file1
produces this output:
1: line 1 from file1
2: line 1 from file2
1: line 2 from file1
2: line 2 from file2
...etc
Note: this code assumes that file1 is of greater than or equal length to file2.
If file1 contains more lines than file2 and you want to output blank lines for file2 after it finishes, add an else clause to the getline test:
awk '{print; if(getline < "file2") print; else print ""}' file1
or
awk '{print "1: "$0; if(getline < "file2") print "2: "$0; else print"2: "}' file1
#Sujoy's answer points in a useful direction. You can add line numbers, sort, and strip the line numbers:
(cat -n file1 ; cat -n file2 ) | sort -n | cut -f2-
Note (of interest to me) this needs a little more work to get the ordering right if instead of static files you use the output of commands that may run slower or faster than one another. In that case you need to add/sort/remove another tag in addition to the line numbers:
(cat -n <(command1...) | sed 's/^/1\t/' ; cat -n <(command2...) | sed 's/^/2\t/' ; cat -n <(command3) | sed 's/^/3\t/' ) \
| sort -n | cut -f2- | sort -n | cut -f2-
With GNU sed:
sed 'R file2' file1
Output:
line1.1
line2.1
line1.2
line2.2
line1.3
line2.3
Here's a GUI way to do it: Paste them into two columns in a spreadsheet, copy all cells out, then use regular expressions to replace tabs with newlines.
cat file1 file2 |sort -t. -k 2.1
Here its specified that the separater is "." and that we are sorting on the first character of the second field.
Usually grep command is used to display the line contaning the specified pattern. Is there any way to display n lines before and after the line which contains the specified pattern?
Can this will be achieved using awk?
Yes, use
grep -B num1 -A num2
to include num1 lines of context before the match, and num2 lines of context after the match.
EDIT:
Seems the OP is using AIX. This has a different set of options which doesn't include -B and -A
this link describes grep on AIX 4.3 (it doesn't look promising)
Matt's perl script might be a better solution.
Here is what I usually do on AIX:
before=2 << The number of lines to be shown Before >>
after=2 << The number of lines to be shown After >>
grep -n <pattern> <filename> | cut -d':' -f1 | xargs -n1 -I % awk "NR<=%+$after && NR>=%-$before" <filename>
If you do not want the extra 2 varialbles you can always use it an a one line:
grep -n <pattern> <filename> | cut -d':' -f1 | xargs -n1 -I % awk 'NR<=%+<<after>> && NR>=%-<<before>>' <filename>
Suppose I have a pattern 'stack' and the filename is flow.txt
I want 2 lines before and 3 lines after. The the command will be like:
grep -n 'stack' flow.txt | cut -d':' -f1 | xargs -n1 -I % awk 'NR<=%+3 && NR>=%-2' flow.txt
I want 2 lines before and only - the the command will be like:
grep -n 'stack' flow.txt | cut -d':' -f1 | xargs -n1 -I % awk 'NR<=% && NR>=%-2' flow.txt
I want 3 lines after and only - the the command will be like:
grep -n 'stack' flow.txt | cut -d':' -f1 | xargs -n1 -I % awk 'NR<=%+3 && NR>=%' flow.txt
Multiple Files - change it for Awk & grep. From above for the pattern 'stack' with the filename is flow.* - 2 lines before and 3 lines after. The the command will be like:
awk 'BEGIN {
before=1; after=3; pattern="stack";
i=0; hold[before]=""; afterprints=0}
{
#Print the lines from the previous Match
if (afterprints > 0)
{
print FILENAME ":" FNR ":" $0
afterprints-- #keep a track of the lines to print after - this can be reset if a match is found
if (afterprints == 0) print "---"
}
#Look for the pattern in current line
if ( match($0, pattern) > 0 )
{
# print the lines in the hold round robin buffer from the current line to line-1
# if (before >0) => user wants lines before avoid divide by 0 in %
# and afterprints => 0 - we have not printed the line already
for(j=i; j < i+before && before > 0 && afterprints == 0 ; j++)
print hold[j%before]
if (afterprints == 0) # print the line if we have not printed the line already
print FILENAME ":" FNR ":" $0
afterprints=after
}
if (before > 0) # Store the lines in the round robin hold buffer
{ hold[i]=FILENAME ":" FNR ":" $0
i=(i+1)%before }
}' flow.*
From the tags, it's likely that the system has a grep that may not support providing context (Solaris is one system that doesn't and I can't remember about AIX). If that is the case, there's a perl script that may help at http://www.sun.com/bigadmin/jsp/descFile.jsp?url=descAll/cgrep__context_grep.
If you have sed you could use this shell script
BEFORE=2
AFTER=3
FILE=file.txt
PATTERN=pattern
for i in $(grep -n $PATTERN $FILE | sed -e 's/\:.*//')
do head -n $(($AFTER+$i)) $FILE | tail -n $(($AFTER+$BEFORE+1))
done
What it does is, grep -n prefixes each match with the line it was found at, the sed strips all but the line it was found at. Then you use head to get the lines up to the line it was found on plus an additional $AFTER lines. That's then piped to tail to just get $BEFORE + $AFTER + 1 lines (that is, your matching line plus the number of lines before and after)
Sure there is (from the grep man page):
-B NUM, --before-context=NUM
Print NUM lines of leading context before matching lines.
Places a line containing a group separator (--) between
contiguous groups of matches. With the -o or --only-matching
option, this has no effect and a warning is given.
-A NUM, --after-context=NUM
Print NUM lines of trailing context after matching lines.
Places a line containing a group separator (--) between
contiguous groups of matches. With the -o or --only-matching
option, this has no effect and a warning is given.
and if you want the same amount of lines before AND after the match, use:
-C NUM, -NUM, --context=NUM
Print NUM lines of output context. Places a line containing a
group separator (--) between contiguous groups of matches. With
the -o or --only-matching option, this has no effect and a
warning is given.
you can use awk
awk 'BEGIN{t=4}
c--&&c>=0
/pattern/{ c=t; for(i=NR;i<NR+t;i++)print a[i%t] }
{ a[NR%t]=$0}
' file
output
$ more file
1
2
3
4
5
pattern
6
7
8
9
10
11
$ ./shell.sh
2
3
4
5
6
7
8
9