Update Shiny-R custom progressbar - r

I use to put some progressbar in my shiny apps using shinyBS package. But the new version working with bootstrap 3 does not have the option.
As shiny included progressbar is not customizable as wanted, I tried to remake the BS one compatible with bootstrap 3. It works well but I do not manage to update it.
Thanks in advance for any help about this!
Here is an exemple,
NB : label and size are not included in the js yet.
Server : (from https://gist.github.com/artemklevtsov/d280c4343b052c2aaaef )
server <- function(input, output,session) {
tags$script(src="ShinyProgress.js"),
progressBar <- function(inputId,value = 0, label = FALSE, color = "info", size = NULL,
striped = FALSE, active = FALSE, vertical = FALSE) {
if (!is.null(size))
size <- match.arg(size, c("sm", "xs", "xxs"))
text_value <- paste0(value, "%")
if (vertical)
style <- htmltools::css(height = text_value, `min-height` = "2em")
else
style <- htmltools::css(width = text_value, `min-width` = "2em")
htmltools::tags$div(
class = "progress",
id=inputId,
class = if (!is.null(size)) paste0("progress-", size),
class = if (vertical) "vertical",
class = if (active) "active",
htmltools::tags$div(
class = "progress-bar",
class = paste0("progress-bar-", color),
class = if (striped) "progress-bar-striped",
style = style,
role = "progressbar",
`aria-valuenow` = value,
`aria-valuemin` = 0,
`aria-valuemax` = 100,
htmltools::tags$span(class = if (!label) "sr-only", text_value)
)
)
}
updatePB=function(session,inputId,value=NULL,label=NULL,color=NULL,size=NULL,striped=NULL,active=NULL,vertical=NULL) {
data <- dropNulls(list(id=inputId,value=value,label=label,color=color,size=size,striped=striped,active=active,vertical=vertical))
session$sendCustomMessage("updateprogress", data)
}
dropNulls=function(x) {
x[!vapply(x,is.null,FUN.VALUE=logical(1))]
}
observe({input$n1 ; updatePB(session,inputId="pb1",value=input$n1)})
}
UI :
ui <- fluidPage(
numericInput(inputId="n1", label="numeric input", value=10, min = 0, max = 100, step = 1),
mainPanel(progressBar(inputId="pb1",value=10))
)
And I add the following js code to www (as ShinyProgress.js) :
Shiny.addCustomMessageHandler("updateprogress",
function(data) {
$el = $("#"+data.id);
if(data.hasOwnProperty('value')) {
$el.css('width', data.value+'%').attr('aria-valuenow', data.value);
};
if(data.hasOwnProperty('color')) {
$el.removeClass("progress-bar-standard progress-bar-info progress-bar-success progress-bar-danger progress-bar-warning");
$el.addClass("progress-bar-"+data.color);
};
if(data.hasOwnProperty('striped')) {
$el.toggleClass('progress-bar-striped', data.striped);
};
if(data.hasOwnProperty('active')) {
$el.toggleClass('active', data.active);
};
if(data.hasOwnProperty('vertical')) {
$el.toggleClass('vertical', data.vertical);
};
}
);
edit :
I am able to add some clarification, when js code is executed, aria-valuenow and width are well updated but in the main div so the modification is not taken into account :
<div aria-valuenow="100" style="width: 100%;" id="pb1">
<div aria-valuemax="100" aria-valuemin="0" aria-valuenow="0" class="progress-bar progress-bar-info" role="progressbar" style="width:0%;min-width:2em;">
<span class="sr-only">0%</span>
</div>
</div>

So the solution was quite easy, just change the level of the id in the function :
progressBar <- function(inputId, value=0, label=F, color="info", size=NULL, striped=F, active=F, vertical=F) {
stopifnot(is.numeric(value))
if (value < 0 || value > 100)
stop("'value' should be in the range from 0 to 100", call. = FALSE)
if (!(color %in% shinydashboard:::validColors || color %in% shinydashboard:::validStatuses))
stop("'color' should be a valid status or color.", call. = FALSE)
if (!is.null(size))
size <- match.arg(size, c("sm", "xs", "xxs"))
text_value <- paste0(value, "%")
if (vertical)
style <- htmltools::css(height = text_value, `min-height` = "2em")
else
style <- htmltools::css(width = text_value, `min-width` = "2em")
htmltools::tags$div(
class = "progress",
# id=inputId,
class = if (!is.null(size)) paste0("progress-", size),
class = if (vertical) "vertical",
class = if (active) "active",
htmltools::tags$div(
id=inputId,
class = "progress-bar",
class = paste0("progress-bar-", color),
class = if (striped) "progress-bar-striped",
style = style,
role = "progressbar",
`aria-valuenow` = value,
`aria-valuemin` = 0,
`aria-valuemax` = 100,
htmltools::tags$span(class = if (!label) "sr-only", text_value)
)
)
}
I hope that it will be helpfull for any shiny developper to add custom progressbar.

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How to correclty use MutationObserve in Shiny app

I'm trying to observe changes to css using javascript mutationObserver in Shiny. I'm using rhandsontable because we can change the width of a table element in the app, and I'm trying to pick up this change iwth the mutationObserver.
The javascript doesn't seem to be working. I'm unsure why. Nothing is logged to the console, no alert message, and shiny doesn't register the variable being set by javascript.
MutationObserver code
jsCode <- "
const observer = new MutationObserver(
# this function runs when something is observed.
function(mutations){
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var i;
var text;
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text = ''
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})
"
Shiny code:
library(shiny)
library(rhandsontable)
ui <- fluidPage(
tags$head(tags$script(HTML(jsCode))),
rhandsontable::rHandsontableOutput("dataTable")
)
server <- function(input, output, session) {
df = data.frame(
company = c('a', 'b', 'c', 'd'),
bond = c(0.2, 1, 0.3, 0),
equity = c(0.7, 0, 0.5, 1),
cash = c(0.1, 0, 0.2, 0),
stringsAsFactors = FALSE
)
output$dataTable <- renderRHandsontable({
rhandsontable(df, manualColumnResize = TRUE, manualRowResize = TRUE)
})
observeEvent(input$colWidth, {
print(input$colWidth)
})
}
shinyApp(ui, server)
This works:
jsCode <- "
$(document).on('shiny:connected', function(){
setTimeout(function(){
const observer = new MutationObserver(
function(mutations){
console.log('activated')
var i;
var text;
var widthArray = [];
text = ''
for (i = 0; i < document.getElementsByClassName('htCore')[0].getElementsByTagName('col').length; i++) {
text += document.getElementsByClassName('htCore')[0].getElementsByTagName('col')[i].style.width + '<br>';
widthArray.push(document.getElementsByClassName('htCore')[0].getElementsByTagName('col')[i].style.width);
}
alert(text)
Shiny.setInputValue('colWidth', widthArray);
}
)
const cols = document.getElementsByClassName('htCore')[0].getElementsByTagName('colgroup')[0]
observer.observe(cols, {
attributes: true, subtree: true
});
}, 500);
});
"

Problem getting current list of input values in Shiny

I'm having quite a few problems to get the updated values from several coonditionalPanels. I created a reactive variable parList which should contain the parN_sig input variables. These variables should come from conditional panels and they are all named parN_sig. I do not know why but I always end up getting values from the double_sig panel when another panel is shown at the UI.
Here's my code:
ui.r
jscode <- "
shinyjs.disableTab = function(name) {
var tab = $('.nav li a[data-value=' + name + ']');
tab.bind('click.tab', function(e) {
e.preventDefault();
return false;
});
tab.addClass('disabled');
}
shinyjs.enableTab = function(name) {
var tab = $('.nav li a[data-value=' + name + ']');
tab.unbind('click.tab');
tab.removeClass('disabled');
}
"
css <- "
.nav li a.disabled {
background-color: #aaa !important;
color: #333 !important;
cursor: not-allowed !important;
border-color: #aaa !important;
}"
# Create Shiny object
library(shiny)
library(shinythemes)
library(shinyjs)
library(ggplot2)
library(grid)
library(egg)
# source("input.r")
source("functions.r")
formula_tabs<-tabsetPanel(
tabPanel("double_sig",
withMathJax("$$y=d+\\frac{a}{1+exp^{-b*(t-c)}}+\\frac{e}{1+exp^{-f*(t-g)}}$$")
),
tabPanel("gompertz",
withMathJax("$$y=b*exp^{\\ln(\\frac{c}{b})*exp^{-a*t}}$$")
),
tabPanel("verhulst",
withMathJax("$$y=\\frac{b*c}{b+(b-c)*exp^{-a*t}}$$")
),
id = "formulas",
type = "tabs"
)
fluidPage(useShinyjs(),theme = shinytheme("lumen"),useShinyjs(),tags$style("#params { display:none; } #formulas { display:none; }"),
extendShinyjs(text = jscode),inlineCSS(css),
navbarPage("Protein turnover model",id="tabs",
tabsetPanel(tabPanel("Input data",
checkboxInput("multiple","Single file",value = FALSE),
uiOutput("mult_files"),
uiOutput("sing_file"),
actionButton("disp_distr","Show distributions"),
plotOutput("distr_plot"),
plotOutput("distr_stade")
),
tabPanel("Weight fitting",
fileInput("weight_data","Choose weight data to be fitted",accept = c("text/csv")),
div(style="display:inline-block",selectInput("method_we","Select fitting formula",choices = c("Logistic"="verhulst","Gompertz"="gompertz","Empiric"="empirique","Log polynomial"="log_poly","Double sigmoid"="double_sig"))),
div(style="display:inline-block",formula_tabs), ## "Contois"="contois",,"Noyau"="seed",
conditionalPanel("input.method_we=='verhulst'",textInput("par1_sig","Enter value of a",value =0.1),
textInput("par2_sig","Enter value of b",value = 100),
textInput("par3_sig","Enter value of c",value = 1)),
conditionalPanel("input.method_we=='gompertz'",textInput("par1_sig","Enter value of a",value =0.065),
textInput("par2_sig","Enter value of b",value = 114.39),
textInput("par3_sig","Enter value of c",value = 0.52)),
conditionalPanel("input.method_we=='empirique'",textInput("par1_sig","Enter value of a",value =5.38),
textInput("par2_sig","Enter value of b",value = 8),
textInput("par3_sig","Enter value of c",value = 7)),
conditionalPanel("input.method_we=='double_sig'",textInput("par1_sig","Enter value of a",value = 48),
textInput("par2_sig","Enter value of b",value = 0.144),
textInput("par3_sig","Enter value of c",value = 35),
textInput("par4_sig","Enter value of d",value = 0.4),
textInput("par5_sig","Enter value of e",value = 48),
textInput("par6_sig","Enter value of f",value = 0.042),
textInput("par7_sig","Enter value of g",value = 90)),
actionButton("fit_op","Fit"),
plotOutput("fitplot")
),
tabPanel("mRNA fitting and calculation",
textInput("ksmin","Value of ksmin",value =3*4*3*3.6*24),
selectInput("fit_mrna","Select fitting formula",choices=c("3rd degree polynomial"="3_deg","6th degree polynomial"="6_deg","3rd degree logarithmic polynomial"="3_deg_log")),
actionButton("run_loop","Run calculation"),
disabled(downloadButton("downFile","Save results"))
),
tabPanel("Results",id="tabRes",
uiOutput("select_res"),
plotOutput("fit_prot_plot")
)
))
)
server.r
library(shiny)
library(shinythemes)
library(shinyjs)
library(ggplot2)
library(grid)
library(egg)
# source("input.r")
source("functions.r")
function(input, output, session) {
js$disableTab("tabRes")
fit_op<-reactiveValues(data=NULL)
run_calc<-reactiveValues(data=NULL)
en_but<-reactiveValues(enable=FALSE)
theme<<-theme(panel.background = element_blank(),panel.border=element_rect(fill=NA),panel.grid.major = element_blank(),panel.grid.minor = element_blank(),strip.background=element_blank(),axis.text.x=element_text(colour="black"),axis.text.y=element_text(colour="black"),axis.ticks=element_line(colour="black"),plot.margin=unit(c(1,1,1,1),"line"))
output$mult_files<-renderUI({
if (!input$multiple){
tagList(fileInput("prot_file","Choose protein file"),
fileInput("mrna_file","Choose transcript file"))
}
})
output$sing_file<-renderUI({
if (input$multiple){
tagList(textInput("protein_tab","Name of protein tab",value = "Proteines"),
textInput("rna_tab","Name of mRNA tab",value = "Transcrits"),
fileInput("data_file","Choose xls/xlsx file",accept=c(".xls",".xlsx")))
}
})
observeEvent(input$method_we, {
# updateTabsetPanel(session, "params", selected = input$method_we)
updateTabsetPanel(session,"formulas",selected = input$method_we)
})
observe({
if(!is.null(input$data_file)){
inFile<-input$data_file
list_data<-loadData(inFile$datapath,input$rna_tab,input$protein_tab,poids=F)
mrna_data<-list_data$mrna
prot_data<-list_data$prot
test_list<-list_data$parse
test_list<<-sample(test_list,3)
clean_mrna_data<<-mrna_data[,-which(is.na(as.numeric(as.character(colnames(mrna_data)))))]
clean_prot_data<<-prot_data[,-which(is.na(as.numeric(as.character(colnames(prot_data)))))]
}
})
observe({
if((!is.null(input$prot_file)) & (!is.null(input$mrna_file))){
protFile<-input$prot_file
mrnaFile<-input$mrna_file
prot_data<-loadData(protFile$datapath,"","",poids=F)
mrna_data<-loadData(mrnaFile$datapath,"","",poids=F)
clean_mrna_data<<-mrna_data[,-which(is.na(as.numeric(as.character(colnames(mrna_data)))))]
clean_prot_data<<-prot_data[,-which(is.na(as.numeric(as.character(colnames(prot_data)))))]
total_data<-merge(mrna_data,prot_data)
lista<-vector("list",nrow(mrna_data))
for (i in seq(1,nrow(total_data))){
lista[[i]]<-list("Protein_ID"=total_data[i,"Protein"],"Transcrit_ID"=total_data[i,"Transcrit"],"Transcrit_val"=as.matrix(total_data[i,3:29]),"Protein_val"=as.matrix(total_data[i,30:ncol(total_data)]),"DPA"=t)
}
# test_list<<-lista
test_list<<-sample(lista,3)
}
})
observeEvent(input$disp_distr,{
print("Plotting...")
output$distr_plot<-renderPlot({print(combineGraphs(clean_mrna_data,clean_prot_data,"",moyenne = T))})
print("Finished")
})
# parList<-reactiveValues()
# observe({
# for (i in reactiveValuesToList(input)){
# print(i)
# if (grepl("par[1-9]+_sig",i,perl = T)){
# newlist[[input[[i]]]]<-input[[i]]
# }
# }
# # })
parList<-reactive({
x<-reactiveValuesToList(input)
x_ind<-grep("par[1-9]+",names(x),perl = T)
newlist<-vector("list",length(x_ind))
names(newlist)<-names(x[x_ind])
for (el in names(newlist)){
newlist[[el]]<-as.numeric(as.character(input[[el]]))
}
names(newlist)<-gsub("_sig","",names(newlist))
newlist<-newlist[order(names(newlist))]
newlist
})
observeEvent(input$fit_op,{
browser()
print(parList())
inFile<-input$weight_data
days_kiwi<-rep(c(0,13,26,39,55,76,118,179,222), each = 3)
poids_data<-loadData(inFile$datapath,"","",poids=T)
print("Fitting...")
tryCatch({
coefs_poids<<-fitPoids_v2(poids_data[,1],poids_data[,2],input$method_we,parList())
},
warning = function(warn){
showNotification(paste0(warn), type = 'warning')
},
error = function(err){
showNotification(paste0(err), type = 'err')
})
print(coefs_poids$coefs)
val_mu<-mu(c(poids_data$DPA),input$method_we,coefs_poids$coefs,coefs_poids$formula,dpa_analyse = NULL)
data_mu<-data.frame("DPA"=c(poids_data$DPA),"Mu"=val_mu)
g_mu<<-ggplot(data_mu,aes(x=DPA,y=Mu))+geom_line()+theme+xlab("DPA")+ylab("Growth rate (days^-1)")
fit_op$state<-TRUE
print("Finished!!")
output$fitplot<-renderPlot({
req((fit_op$state)==TRUE,exists("coefs_poids"))
ggarrange(coefs_poids$graph,g_mu,ncol=2)
})
})
observeEvent(input$run_loop,{
if (input$fit_mrna!=""){
ksmin=as.numeric(as.character(input$ksmin))
score=0
cont<-0
poids_coef<<-coefs_poids$coefs
formula_poids<<-coefs_poids$formula
mess<-showNotification(paste("Running..."),duration = NULL,type = "message")
for (el in test_list){
tryCatch({
run_calc$run<-TRUE
cont<-cont+1
print(cont)
norm_data<-normaMean(el$Protein_val,el$Transcrit_val,ksmin)
fittedmrna<<-fit_testRNA(el$DPA,norm_data$mrna,"3_deg")
par_k<-solgss_Borne(el$DPA,as.vector(norm_data$prot),as.numeric(norm_data$ks),score)
par_k[["plot_fit_prot"]]<-plotFitProt(el$DPA,as.vector(norm_data$prot),par_k$prot_fit)
X<-matrice_sens(el$DPA,par_k[["solK"]][,1])
diff<-(par_k[["error"]][["errg"]][1]*norm(as.vector(norm_data$prot),"2"))^2
par_k[["corr_matrix"]]<-matrice_corr(X,length(norm_data$prot),diff)
if (!is.null(par_k)){
test_list[[cont]]$SOL<-par_k
# write.csv(test_list[[cont]][["SOL"]][["solK"]],paste("solK/",paste(test_list[[cont]][["Transcrit_ID"]],"_Sol_ks_kd.csv"),sep = ""))
}
},error=function(e){showNotification(paste0("Protein fitting not achieved for ",el$Transcrit_ID,sep=" "),type = "error",duration = NULL)})
}
valid_res<<-Filter(function(x) {length(x) > 5}, test_list)
print(valid_res[[1]])
mess<-showNotification(paste("Finished!!"),duration = NULL,type = "message")
en_but$enable<-TRUE
}
})
output$downFile<-downloadHandler(
filename = function(){
paste("results_KsKd-",Sys.Date(),".zip",sep="")
},
content = function(file){
owd <- setwd(tempdir())
on.exit(setwd(owd))
files <- NULL;
for (res in valid_res){
fileName<-paste(res[["Transcrit_ID"]],"_Sol_ks_kd.csv",sep = "")
write.csv(res[["SOL"]][["solK"]],fileName)
files<-c(files,fileName)
}
zip(zipfile = file,files = files)
if(file.exists(paste0(file, ".zip"))) {file.rename(paste0(file, ".zip"), file)}
},contentType = "application/zip"
)
observe({
if (en_but$enable){
enable("downFile")
}
})
}
I recently started using Shiny, so any help would be extremely appreciated. Thanks in advance!
Welcome to SO.
You've identified the problem yourself: "...are all named parN_sig". That means you don't have several inputs, you only have one. So you always get the value of (say) input$par2_sig from the first conditional panel regardless of which panel you're trying to access.
You have two options:
Provide unique names for every textInput. That will be a pain. Or...
Use modules. They take a bit of getting used to, but are worth the effrt in the end.
If you set the module up correctly, you'll be able to use the same module for each conditional panel, even though they have different numbers of textinputs.
See this page for help on creating your first module.

Draggable interactive bar chart Rshiny

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https://www.mathematica-mpr.com/dataviz/race-to-the-top
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library(jsonlite)
barChartInput <- function(inputId, width = "100%", height = "400px",
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tags$div(id = inputId, class = "amchart",
style = sprintf("width: %s; height: %s;", width, height),
`data-data` = as.character(toJSON(data)),
`data-category` = category,
`data-value` = value,
`data-min` = minValue,
`data-max` = maxValue,
`data-color` = color)
}
dat <- data.frame(
country = c("USA", "China", "Japan", "Germany", "UK", "France"),
visits = c(3025, 1882, 1809, 1322, 1122, 1114)
)
ui <- fluidPage(
tags$head(
tags$script(src = "http://www.amcharts.com/lib/4/core.js"),
tags$script(src = "http://www.amcharts.com/lib/4/charts.js"),
tags$script(src = "http://www.amcharts.com/lib/4/themes/animated.js"),
tags$script(src = "barchartBinding.js")
),
fluidRow(
column(8,
barChartInput("mybarchart", data = dat,
category = "country", value = "visits",
minValue = 0, maxValue = 3500)),
column(4,
tags$label("Data:"),
verbatimTextOutput("data"),
br(),
tags$label("Change:"),
verbatimTextOutput("change"))
)
)
server <- function(input, output){
output[["data"]] <- renderPrint({
if(is.null(input[["mybarchart"]])){
dat
}else{
fromJSON(input[["mybarchart"]])
}
})
output[["change"]] <- renderPrint({ input[["mybarchart_change"]] })
}
shinyApp(ui, server)
The file barchartBinding.js, to put in the www subfolder of the app file:
var barchartBinding = new Shiny.InputBinding();
$.extend(barchartBinding, {
find: function (scope) {
return $(scope).find(".amchart");
},
getValue: function (el) {
return null;
},
subscribe: function (el, callback) {
$(el).on("change.barchartBinding", function (e) {
callback();
});
},
unsubscribe: function (el) {
$(el).off(".barchartBinding");
},
initialize: function (el) {
var id = el.getAttribute("id");
var $el = $(el);
var data = $el.data("data");
var dataCopy = $el.data("data");
var categoryName = $el.data("category");
var valueName = $el.data("value");
var minValue = $el.data("min");
var maxValue = $el.data("max");
var barColor = $el.data("color");
am4core.useTheme(am4themes_animated);
var chart = am4core.create(id, am4charts.XYChart);
chart.hiddenState.properties.opacity = 0; // this makes initial fade in effect
chart.data = data;
chart.padding(40, 40, 0, 0);
chart.maskBullets = false; // allow bullets to go out of plot area
var text = chart.plotContainer.createChild(am4core.Label);
text.text = "Drag column bullet to change its value";
text.y = 92;
text.x = am4core.percent(100);
text.horizontalCenter = "right";
text.zIndex = 100;
text.fillOpacity = 0.7;
// category axis
var categoryAxis = chart.xAxes.push(new am4charts.CategoryAxis());
categoryAxis.title.text = categoryName;
categoryAxis.title.fontWeight = "bold";
categoryAxis.dataFields.category = categoryName;
categoryAxis.renderer.grid.template.disabled = true;
categoryAxis.renderer.minGridDistance = 50;
// value axis
var valueAxis = chart.yAxes.push(new am4charts.ValueAxis());
valueAxis.title.text = valueName;
valueAxis.title.fontWeight = "bold";
// we set fixed min/max and strictMinMax to true, as otherwise value axis will adjust min/max while dragging and it won't look smooth
valueAxis.strictMinMax = true;
valueAxis.min = minValue;
valueAxis.max = maxValue;
valueAxis.renderer.minWidth = 60;
// series
var series = chart.series.push(new am4charts.ColumnSeries());
series.dataFields.categoryX = categoryName;
series.dataFields.valueY = valueName;
series.tooltip.pointerOrientation = "vertical";
series.tooltip.dy = -8;
series.sequencedInterpolation = true;
series.defaultState.interpolationDuration = 1500;
series.columns.template.strokeOpacity = 0;
// label bullet
var labelBullet = new am4charts.LabelBullet();
series.bullets.push(labelBullet);
labelBullet.label.text = "{valueY.value.formatNumber('#.')}";
labelBullet.strokeOpacity = 0;
labelBullet.stroke = am4core.color("#dadada");
labelBullet.dy = -20;
// series bullet
var bullet = series.bullets.create();
bullet.stroke = am4core.color("#ffffff");
bullet.strokeWidth = 3;
bullet.opacity = 0; // initially invisible
bullet.defaultState.properties.opacity = 0;
// resize cursor when over
bullet.cursorOverStyle = am4core.MouseCursorStyle.verticalResize;
bullet.draggable = true;
// create hover state
var hoverState = bullet.states.create("hover");
hoverState.properties.opacity = 1; // visible when hovered
// add circle sprite to bullet
var circle = bullet.createChild(am4core.Circle);
circle.radius = 8;
// while dragging
bullet.events.on("drag", event => {
handleDrag(event);
});
bullet.events.on("dragstop", event => {
handleDrag(event);
var dataItem = event.target.dataItem;
dataItem.column.isHover = false;
event.target.isHover = false;
dataCopy[dataItem.index][valueName] = dataItem.values.valueY.value;
Shiny.setInputValue(id, JSON.stringify(dataCopy));
Shiny.setInputValue(id + "_change", {
index: dataItem.index,
category: dataItem.categoryX,
value: dataItem.values.valueY.value
});
});
function handleDrag(event) {
var dataItem = event.target.dataItem;
// convert coordinate to value
var value = valueAxis.yToValue(event.target.pixelY);
// set new value
dataItem.valueY = value;
// make column hover
dataItem.column.isHover = true;
// hide tooltip not to interrupt
dataItem.column.hideTooltip(0);
// make bullet hovered (as it might hide if mouse moves away)
event.target.isHover = true;
}
// column template
var columnTemplate = series.columns.template;
columnTemplate.column.cornerRadiusTopLeft = 8;
columnTemplate.column.cornerRadiusTopRight = 8;
columnTemplate.fillOpacity = 0.8;
columnTemplate.tooltipText = "drag me";
columnTemplate.tooltipY = 0; // otherwise will point to middle of the column
// hover state
var columnHoverState = columnTemplate.column.states.create("hover");
columnHoverState.properties.fillOpacity = 1;
// you can change any property on hover state and it will be animated
columnHoverState.properties.cornerRadiusTopLeft = 35;
columnHoverState.properties.cornerRadiusTopRight = 35;
// show bullet when hovered
columnTemplate.events.on("over", event => {
var dataItem = event.target.dataItem;
var itemBullet = dataItem.bullets.getKey(bullet.uid);
itemBullet.isHover = true;
});
// hide bullet when mouse is out
columnTemplate.events.on("out", event => {
var dataItem = event.target.dataItem;
var itemBullet = dataItem.bullets.getKey(bullet.uid);
itemBullet.isHover = false;
});
// start dragging bullet even if we hit on column not just a bullet, this will make it more friendly for touch devices
columnTemplate.events.on("down", event => {
var dataItem = event.target.dataItem;
var itemBullet = dataItem.bullets.getKey(bullet.uid);
itemBullet.dragStart(event.pointer);
});
// when columns position changes, adjust minX/maxX of bullets so that we could only dragg vertically
columnTemplate.events.on("positionchanged", event => {
var dataItem = event.target.dataItem;
var itemBullet = dataItem.bullets.getKey(bullet.uid);
var column = dataItem.column;
itemBullet.minX = column.pixelX + column.pixelWidth / 2;
itemBullet.maxX = itemBullet.minX;
itemBullet.minY = 0;
itemBullet.maxY = chart.seriesContainer.pixelHeight;
});
// as by default columns of the same series are of the same color, we add adapter which takes colors from chart.colors color set
columnTemplate.adapter.add("fill", (fill, target) => {
return barColor; //chart.colors.getIndex(target.dataItem.index).saturate(0.3);
});
bullet.adapter.add("fill", (fill, target) => {
return chart.colors.getIndex(target.dataItem.index).saturate(0.3);
});
}
});
Shiny.inputBindings.register(barchartBinding);
Update
And below is a Shiny implementation of the amcharts4 grouped bar chart.
library(shiny)
library(jsonlite)
registerInputHandler("dataframe", function(data, ...) {
fromJSON(toJSON(data, auto_unbox = TRUE))
}, force = TRUE)
groupedBarChartInput <- function(inputId, width = "100%", height = "400px",
data, categoryField, valueFields,
minValue, maxValue,
ndecimals = 0,
colors = NULL,
categoryLabel = categoryField,
valueLabels = valueFields,
categoryAxisTitle = categoryLabel,
valueAxisTitle = NULL,
categoryAxisTitleFontSize = 22,
valueAxisTitleFontSize = 22,
categoryAxisTitleColor = "indigo",
valueAxisTitleColor = "indigo",
draggable = rep(FALSE, length(valueFields))){
tags$div(id = inputId, class = "amGroupedBarChart",
style = sprintf("width: %s; height: %s;", width, height),
`data-data` = as.character(toJSON(data)),
`data-categoryfield` = categoryField,
`data-valuefields` = as.character(toJSON(valueFields)),
`data-min` = minValue,
`data-max` = maxValue,
`data-ndecimals` = ndecimals,
`data-colors` = ifelse(is.null(colors), "auto", as.character(toJSON(colors))),
`data-valuenames` = as.character(toJSON(valueLabels)),
`data-categoryname` = categoryLabel,
`data-categoryaxistitle` = categoryAxisTitle,
`data-valueaxistitle` = valueAxisTitle,
`data-draggable` = as.character(toJSON(draggable)),
`data-categoryaxistitlefontsize` = categoryAxisTitleFontSize,
`data-valueaxistitlefontsize` = valueAxisTitleFontSize,
`data-categoryaxistitlecolor` = categoryAxisTitleColor,
`data-valueaxistitlecolor` = valueAxisTitleColor)
}
set.seed(666)
dat <- data.frame(
year = rpois(5, 2010),
income = rpois(5, 25),
expenses = rpois(5, 20)
)
ui <- fluidPage(
tags$head(
tags$script(src = "http://www.amcharts.com/lib/4/core.js"),
tags$script(src = "http://www.amcharts.com/lib/4/charts.js"),
tags$script(src = "http://www.amcharts.com/lib/4/themes/animated.js"),
tags$script(src = "groupedBarChartBinding.js")
),
fluidRow(
column(8,
groupedBarChartInput("mybarchart", data = dat[order(dat$year),],
categoryField = "year",
valueFields = c("income", "expenses"),
categoryLabel = "Year",
valueLabels = c("Income", "Expenses"),
valueAxisTitle = "Income and expenses",
minValue = 0, maxValue = 35,
draggable = c(FALSE, TRUE),
colors = c("darkmagenta","darkred"))),
column(4,
tags$label("Data:"),
verbatimTextOutput("data"),
br(),
tags$label("Change:"),
verbatimTextOutput("change"))
)
)
server <- function(input, output){
output[["data"]] <- renderPrint({
input[["mybarchart"]]
})
output[["change"]] <- renderPrint({ input[["mybarchart_change"]] })
}
shinyApp(ui, server)
The file groupedBarChartBinding.js, to put in the www subfolder:
var groupedBarChartBinding = new Shiny.InputBinding();
$.extend(groupedBarChartBinding, {
find: function(scope) {
return $(scope).find(".amGroupedBarChart");
},
getValue: function(el) {
return $(el).data("data");
},
getType: function(el) {
return "dataframe";
},
subscribe: function(el, callback) {
$(el).on("change.groupedBarChartBinding", function(e) {
callback();
});
},
unsubscribe: function(el) {
$(el).off(".groupedBarChartBinding");
},
initialize: function(el) {
var id = el.getAttribute("id");
var $el = $(el);
var data = $el.data("data");
var dataCopy = $el.data("data");
var categoryField = $el.data("categoryfield");
var valueFields = $el.data("valuefields");
var minValue = $el.data("min");
var maxValue = $el.data("max");
var colors = $el.data("colors");
var valueNames = $el.data("valuenames");
var categoryName = $el.data("categoryname");
var categoryAxisTitle = $el.data("categoryaxistitle");
var valueAxisTitle = $el.data("valueaxistitle");
var draggable = $el.data("draggable");
var ndecimals = $el.data("ndecimals");
var numberFormat = "#.";
for (var i = 0; i < ndecimals; i++) {
numberFormat = numberFormat + "#";
}
var categoryAxisTitleFontSize = $el.data("categoryaxistitlefontsize") + "px";
var valueAxisTitleFontSize = $el.data("valueaxistitlefontsize") + "px";
var categoryAxisTitleColor = $el.data("categoryaxistitlecolor");
var valueAxisTitleColor = $el.data("valueaxistitlecolor");
am4core.useTheme(am4themes_animated);
var chart = am4core.create(id, am4charts.XYChart);
chart.hiddenState.properties.opacity = 0; // this makes initial fade in effect
chart.data = data;
chart.padding(40, 40, 40, 40);
chart.maskBullets = false; // allow bullets to go out of plot area
// Create axes
var categoryAxis = chart.yAxes.push(new am4charts.CategoryAxis());
categoryAxis.dataFields.category = categoryField;
categoryAxis.numberFormatter.numberFormat = numberFormat;
categoryAxis.renderer.inversed = true;
categoryAxis.renderer.grid.template.location = 0;
categoryAxis.renderer.cellStartLocation = 0.1;
categoryAxis.renderer.cellEndLocation = 0.9;
categoryAxis.title.text = categoryAxisTitle;
categoryAxis.title.fontWeight = "bold";
categoryAxis.title.fontSize = categoryAxisTitleFontSize;
categoryAxis.title.setFill(categoryAxisTitleColor);
var valueAxis = chart.xAxes.push(new am4charts.ValueAxis());
valueAxis.renderer.opposite = true;
valueAxis.strictMinMax = true;
valueAxis.min = minValue;
valueAxis.max = maxValue;
if (valueAxisTitle !== null) {
valueAxis.title.text = valueAxisTitle;
valueAxis.title.fontWeight = "bold";
valueAxis.title.fontSize = valueAxisTitleFontSize;
valueAxis.title.setFill(valueAxisTitleColor);
}
function handleDrag(event) {
var dataItem = event.target.dataItem;
// convert coordinate to value
var value = valueAxis.xToValue(event.target.pixelX);
// set new value
dataItem.valueX = value;
// make column hover
dataItem.column.isHover = true;
// hide tooltip not to interrupt
dataItem.column.hideTooltip(0);
// make bullet hovered (as it might hide if mouse moves away)
event.target.isHover = true;
}
// Create series
function createSeries(field, name, barColor, drag) {
var series = chart.series.push(new am4charts.ColumnSeries());
series.dataFields.valueX = field;
series.dataFields.categoryY = categoryField;
series.name = name;
series.sequencedInterpolation = true;
var valueLabel = series.bullets.push(new am4charts.LabelBullet());
valueLabel.label.text = "{valueX}";
valueLabel.label.horizontalCenter = "left";
valueLabel.label.dx = 10;
valueLabel.label.hideOversized = false;
valueLabel.label.truncate = false;
var categoryLabel = series.bullets.push(new am4charts.LabelBullet());
categoryLabel.label.text = "{name}";
categoryLabel.label.horizontalCenter = "right";
categoryLabel.label.dx = -10;
categoryLabel.label.fill = am4core.color("#fff");
categoryLabel.label.hideOversized = false;
categoryLabel.label.truncate = false;
// column template
var columnTemplate = series.columns.template;
console.log(columnTemplate);
// columnTemplate.tooltipText = "{name}: [bold]{valueX}[/]";
columnTemplate.tooltipHTML =
"<div style='font-size:9px'>" + "{name}" + ": " + "<b>{valueX}</b>" + "</div>";
columnTemplate.height = am4core.percent(100);
columnTemplate.column.cornerRadiusBottomRight = 8;
columnTemplate.column.cornerRadiusTopRight = 8;
columnTemplate.fillOpacity = 1;
columnTemplate.tooltipX = 0; // otherwise will point to middle of the column
// hover state
var columnHoverState = columnTemplate.column.states.create("hover");
columnHoverState.properties.fillOpacity = 1;
// you can change any property on hover state and it will be animated
columnHoverState.properties.cornerRadiusBottomRight = 35;
columnHoverState.properties.cornerRadiusTopRight = 35;
// color
if (barColor !== false) {
columnTemplate.adapter.add("fill", (fill, target) => {
return barColor;
});
}
if (drag) {
// series bullet
var bullet = series.bullets.create();
bullet.stroke = am4core.color("#ffffff");
bullet.strokeWidth = 1;
bullet.opacity = 0; // initially invisible
bullet.defaultState.properties.opacity = 0;
// resize cursor when over
bullet.cursorOverStyle = am4core.MouseCursorStyle.horizontalResize;
bullet.draggable = true;
// create hover state
var hoverState = bullet.states.create("hover");
hoverState.properties.opacity = 1; // visible when hovered
// add circle sprite to bullet
var circle = bullet.createChild(am4core.Circle);
circle.radius = 5;
// dragging
// while dragging
bullet.events.on("drag", event => {
handleDrag(event);
});
bullet.events.on("dragstop", event => {
handleDrag(event);
var dataItem = event.target.dataItem;
dataItem.column.isHover = false;
event.target.isHover = false;
dataCopy[dataItem.index][field] = dataItem.values.valueX.value;
Shiny.setInputValue(id + ":dataframe", dataCopy);
Shiny.setInputValue(id + "_change", {
index: dataItem.index,
field: field,
category: dataItem.categoryY,
value: dataItem.values.valueX.value
});
});
// bullet color
if (barColor !== false) {
bullet.adapter.add("fill", (fill, target) => {
return barColor;
});
}
// show bullet when hovered
columnTemplate.events.on("over", event => {
var dataItem = event.target.dataItem;
var itemBullet = dataItem.bullets.getKey(bullet.uid);
itemBullet.isHover = true;
});
// hide bullet when mouse is out
columnTemplate.events.on("out", event => {
var dataItem = event.target.dataItem;
var itemBullet = dataItem.bullets.getKey(bullet.uid);
itemBullet.isHover = false;
});
// start dragging bullet even if we hit on column not just a bullet, this will make it more friendly for touch devices
columnTemplate.events.on("down", event => {
var dataItem = event.target.dataItem;
var itemBullet = dataItem.bullets.getKey(bullet.uid);
itemBullet.dragStart(event.pointer);
});
// when columns position changes, adjust minY/maxY of bullets so that we could only dragg horizontally
columnTemplate.events.on("positionchanged", event => {
var dataItem = event.target.dataItem;
var itemBullet = dataItem.bullets.getKey(bullet.uid);
var column = dataItem.column;
itemBullet.minY = column.pixelY + column.pixelHeight / 2;
itemBullet.maxY = itemBullet.minY;
itemBullet.minX = 0;
itemBullet.maxX = chart.seriesContainer.pixelWidth;
});
}
}
for (var i = 0; i < valueFields.length; i++) {
var color = colors === "auto" ? null : colors[i];
createSeries(valueFields[i], valueNames[i], color, draggable[i]);
}
}
});
Shiny.inputBindings.register(groupedBarChartBinding);
Update 2
I have done a package now : shinyAmBarCharts. I have added a button (optional) allowing to update the data to another dataset. This fulfills the OP's desideratum:
the graph engages the user to make a guess and then shows the real
data
library(shiny)
library(shinyAmBarCharts)
# create a dataset
set.seed(666)
df0 <- data.frame(
species = rep(c("sorgho","poacee","banana"), each = 3),
condition = rep(c("normal", "stress", "Nitrogen"), 3),
value = rpois(9, 10)
)
df1 <- df0; df1[["value"]] <- 10
dat <- tidyr::spread(df0, condition, value) # true data
dat2 <- tidyr::spread(df1, condition, value) # data template
# grouped bar chart
ui <- fluidPage(
br(),
fluidRow(
column(9,
amBarChart(
"mygroupedbarchart", data = dat2, data2 = dat, height = "400px",
category = "species", value = c("normal", "stress", "Nitrogen"),
valueNames = c("Normal", "Stress", "Nitrogen"),
minValue = 0, maxValue = 20,
draggable = c(TRUE, TRUE, TRUE),
theme = "dark", backgroundColor = "#30303d",
columnStyle = list(fill = c("darkmagenta", "darkred", "gold"),
stroke = "#cccccc",
cornerRadius = 4),
chartTitle = list(text = "Grouped bar chart",
fontSize = 23,
color = "firebrick"),
xAxis = list(title = list(text = "Species",
fontSize = 21,
color = "silver"),
labels = list(color = "whitesmoke",
fontSize = 17)),
yAxis = list(title = list(text = "Value",
fontSize = 21,
color = "silver"),
labels = list(color = "whitesmoke",
fontSize = 14)),
columnWidth = 90,
button = list(text = "Show true data"),
caption = list(text = "[font-style:italic]shinyAmBarCharts[/]",
color = "yellow"),
gridLines = list(color = "whitesmoke",
opacity = 0.4,
width = 1),
tooltip = list(text = "[bold;font-style:italic]{name}: {valueY}[/]",
labelColor = "#101010",
backgroundColor = "cyan",
backgroundOpacity = 0.7)
)
),
column(3,
tags$label("Data:"),
verbatimTextOutput("data"),
br(),
tags$label("Change:"),
verbatimTextOutput("change"))
)
)
server <- function(input, output){
output[["data"]] <- renderPrint({
input[["mygroupedbarchart"]]
})
output[["change"]] <- renderPrint({ input[["mygroupedbarchart_change"]] })
}
shinyApp(ui, server)

Child tables with datatables (expand/collapse)

I like to build a datatable with a Childtable for example with this data:
test = data.table(c(375, 789, 72, 663, 100), c(1237, 1237, 1237, 663, 100), c("abc", "abc", "abc", "d", "e"), c("a","b","c","d","e"))
First i like to have a table:
datatable(test[, .(V2,V3)][3:5])
on click on abc i want to be able to expand that datatable so that the following is shown below:
datatable(test[, .(V1, V4)][1:3])
Output would be a html file written in rmarkdown.
Appreciate any help and thanks in advance.
Here something you can start with.
Code based on #Stéphane's answer here
library(DT)
datatable(
cbind(' ' = '<img src=\"https://raw.githubusercontent.com/DataTables/DataTables/master/examples/resources/details_open.png\"/>',
mtcars), escape = -2,
options = list(
columnDefs = list(
list(visible = FALSE, targets = c(0, 2, 3)),
list(orderable = FALSE, className = 'details-control', targets = 1)
)
),
callback = JS("
table.column(1).nodes().to$().css({cursor: 'pointer'});
var format = function(d) {
return '<table cellpadding=\"5\" cellspacing=\"0\" border=\"0\" style=\"padding-left:50px;\"> ' +
'<thead>'+
'<tr>'+
'<th>1st column</th>'+
'<th>2nd column</th>'+
'</tr>'+
'</thead>'+
'<tbody>'+
'<tr>'+
'<td>'+d[2]+'</td>'+
'<td>'+d[3]+'</td>'+
'</tr>' +
'</tbody>'
'</table>';
};
table.on('click', 'td.details-control', function() {
var td = $(this), row = table.row(td.closest('tr'));
if (row.child.isShown()) {
row.child.hide();
td.html('<img src=\"https://raw.githubusercontent.com/DataTables/DataTables/master/examples/resources/details_open.png\"/>');
} else {
row.child(format(row.data())).show();
td.html('<img src=\"https://raw.githubusercontent.com/DataTables/DataTables/master/examples/resources/details_close.png\"/>');
}
});"
))
See datatable website here for more details.

Resources