I am new to ggplot2. In fact, I only discovered it last week and I haven't quite figured out yet how to use aesthetics and scales etc. There is probably a very easy solution to my problem but I couldn't find a satisfying answer online.
Sorry for the size of the message, but all the data used is in the following script:
dados
Fres Vc Lu
1 466 30 10
2 416 30 10
3 465 30 10
4 416 30 10
5 464 30 10
6 416 30 10
7 476 30 10
8 412 30 10
9 468 30 10
10 410 30 10
11 470 30 10
12 407 30 10
13 468 30 10
14 412 30 10
15 469 30 10
16 414 30 10
17 469 30 10
18 412 30 10
19 467 30 10
20 409 30 10
21 469 30 10
22 415 30 10
23 471 30 10
24 420 30 10
25 469 30 10
26 416 30 10
27 464 30 10
28 409 30 10
29 465 30 10
30 412 30 10
31 464 30 10
32 409 30 10
33 466 30 10
34 417 30 10
35 466 30 10
36 417 30 10
37 464 30 10
38 414 30 10
39 466 30 10
40 415 30 10
41 585 30 94
42 234 30 94
43 589 30 94
44 231 30 94
45 585 30 94
46 223 30 94
47 586 30 94
48 223 30 94
49 572 30 94
50 233 30 94
51 585 30 94
52 233 30 94
53 589 30 94
54 234 30 94
55 598 30 94
56 237 30 94
57 605 30 94
58 237 30 94
59 586 30 94
60 233 30 94
61 588 30 94
62 227 30 94
63 585 30 94
64 230 30 94
65 586 30 94
66 230 30 94
67 591 30 94
68 237 30 94
69 586 30 94
70 234 30 94
71 592 30 94
72 237 30 94
73 595 30 94
74 236 30 94
75 600 30 94
76 227 30 94
77 592 30 94
78 237 30 94
79 592 30 94
80 240 30 94
81 468 30 10
82 408 30 10
83 471 30 10
84 405 30 10
85 475 30 10
86 403 30 10
87 470 30 10
88 409 30 10
89 478 30 10
90 405 30 10
91 474 30 10
92 403 30 10
93 472 30 10
94 402 30 10
95 478 30 10
96 408 30 10
97 477 30 10
98 406 30 10
99 473 30 10
100 406 30 10
101 474 30 10
102 406 30 10
103 477 30 10
104 411 30 10
105 480 30 10
106 413 30 10
107 479 30 10
108 408 30 10
109 476 30 10
110 406 30 10
111 476 30 10
112 404 30 10
113 472 30 10
114 407 30 10
115 474 30 10
116 411 30 10
117 473 30 10
118 415 30 10
119 479 30 10
120 409 30 10
121 578 30 94
122 370 30 94
123 570 30 94
124 378 30 94
125 575 30 94
126 367 30 94
127 579 30 94
128 371 30 94
129 576 30 94
130 362 30 94
131 579 30 94
132 372 30 94
133 588 30 94
134 375 30 94
135 586 30 94
136 372 30 94
137 589 30 94
138 378 30 94
139 587 30 94
140 375 30 94
141 578 30 94
142 368 30 94
143 575 30 94
144 375 30 94
145 574 30 94
146 376 30 94
147 575 30 94
148 367 30 94
149 580 30 94
150 382 30 94
151 583 30 94
152 368 30 94
153 591 30 94
154 386 30 94
155 595 30 94
156 379 30 94
157 593 30 94
158 384 30 94
159 607 30 94
160 399 30 94
161 760 30 122
162 625 30 122
163 746 30 122
164 612 30 122
165 762 30 122
166 625 30 122
167 783 30 122
168 637 30 122
169 778 30 122
170 640 30 122
171 778 30 122
172 638 30 122
173 791 30 122
174 638 30 122
175 782 30 122
176 635 30 122
177 792 30 122
178 640 30 122
179 783 30 122
180 637 30 122
181 774 30 122
182 622 30 122
183 777 30 122
184 618 30 122
185 777 30 122
186 622 30 122
187 765 30 122
188 623 30 122
189 769 30 122
190 625 30 122
191 775 30 122
192 622 30 122
193 777 30 122
194 628 30 122
195 769 30 122
196 620 30 122
197 778 30 122
198 623 30 122
199 788 30 122
200 634 30 122
201 457 40 38
202 416 40 38
203 460 40 38
204 438 40 38
205 465 40 38
206 441 40 38
207 467 40 38
208 442 40 38
209 473 40 38
210 452 40 38
211 469 40 38
212 446 40 38
213 478 40 38
214 450 40 38
215 476 40 38
216 454 40 38
217 479 40 38
218 452 40 38
219 480 40 38
220 450 40 38
221 481 40 38
222 443 40 38
223 476 40 38
224 447 40 38
225 472 40 38
226 450 40 38
227 479 40 38
228 449 40 38
229 478 40 38
230 455 40 38
231 478 40 38
232 457 40 38
233 481 40 38
234 447 40 38
235 504 40 38
236 452 40 38
237 472 40 38
238 447 40 38
239 472 40 38
240 451 40 38
241 622 40 66
242 377 40 66
243 619 40 66
244 378 40 66
245 622 40 66
246 369 40 66
247 616 40 66
248 374 40 66
249 619 40 66
250 374 40 66
251 616 40 66
252 374 40 66
253 621 40 66
254 375 40 66
255 618 40 66
256 397 40 66
257 633 40 66
258 406 40 66
259 652 40 66
260 412 40 66
261 652 40 66
262 419 40 66
263 658 40 66
264 423 40 66
265 659 40 66
266 409 40 66
267 650 40 66
268 405 40 66
269 653 40 66
270 405 40 66
271 652 40 66
272 403 40 66
273 656 40 66
274 408 40 66
275 644 40 66
276 406 40 66
277 649 40 66
278 412 40 66
279 650 40 66
280 406 40 66
281 853 40 122
282 330 40 122
283 859 40 122
284 323 40 122
285 842 40 122
286 308 40 122
287 842 40 122
288 324 40 122
289 831 40 122
290 334 40 122
291 838 40 122
292 341 40 122
293 836 40 122
294 328 40 122
295 840 40 122
296 324 40 122
297 836 40 122
298 321 40 122
299 831 40 122
300 328 40 122
301 833 40 122
302 328 40 122
303 840 40 122
304 330 40 122
305 831 40 122
306 321 40 122
307 833 40 122
308 328 40 122
309 833 40 122
310 321 40 122
311 840 40 122
312 319 40 122
313 838 40 122
314 317 40 122
315 831 40 122
316 319 40 122
317 827 40 122
318 323 40 122
319 836 40 122
320 328 40 122
321 442 40 38
322 407 40 38
323 437 40 38
324 410 40 38
325 444 40 38
326 412 40 38
327 440 40 38
328 414 40 38
329 439 40 38
330 413 40 38
331 436 40 38
332 416 40 38
333 446 40 38
334 412 40 38
335 438 40 38
336 414 40 38
337 443 40 38
338 408 40 38
339 446 40 38
340 407 40 38
341 445 40 38
342 413 40 38
343 453 40 38
344 414 40 38
345 449 40 38
346 417 40 38
347 447 40 38
348 411 40 38
349 443 40 38
350 417 40 38
351 447 40 38
352 410 40 38
353 449 40 38
354 409 40 38
355 442 40 38
356 413 40 38
357 451 40 38
358 412 40 38
359 447 40 38
360 420 40 38
361 526 40 66
362 467 40 66
363 532 40 66
364 470 40 66
365 528 40 66
366 474 40 66
367 529 40 66
368 472 40 66
369 533 40 66
370 480 40 66
371 542 40 66
372 487 40 66
373 545 40 66
374 504 40 66
375 549 40 66
376 507 40 66
377 546 40 66
378 517 40 66
379 541 40 66
380 518 40 66
381 554 40 66
382 514 40 66
383 564 40 66
384 514 40 66
385 571 40 66
386 522 40 66
387 575 40 66
388 525 40 66
389 582 40 66
390 533 40 66
391 588 40 66
392 536 40 66
393 591 40 66
394 553 40 66
395 592 40 66
396 557 40 66
397 592 40 66
398 563 40 66
399 583 40 66
400 568 40 66
> dadosc <- summarySE(dados, measurevar="Fres", groupvars=c("Vc","Lu"))
> dadosc
Vc Lu N Fres sd se ci
1 30 10 80 440.6875 30.91540 3.456447 6.879885
2 30 94 80 445.0250 150.97028 16.878990 33.596789
3 30 122 40 701.7000 75.06688 11.869115 24.007552
4 40 38 80 444.6125 23.31973 2.607225 5.189552
5 40 66 80 526.7125 90.77824 10.149316 20.201707
6 40 122 40 581.1250 259.74092 41.068645 83.069175
> ggplot(dadosc, aes(x=Lu, y=Fres, colour=Vc)) +
+ geom_errorbar(aes(ymin=Fres-se, ymax=Fres+se), width=5) +
+ geom_point()
> pd <- position_dodge(0.1)
Up to here I got this graph, very close to my desired graph, except for the fact I´d like a legend with only two colors, one for Vc=30 and other for Vc=40.
![enter image description here][1]
Then I try the following script:
ggplot(dadosc, aes(x=Lu, y=Fres, ymax = max(Fres), colour=Vc, group=Vc)) +
+ geom_errorbar(aes(ymin=Fres-se, ymax=Fres+se), colour="black", width=.1, position=pd) +
+ geom_point(position=pd, size=3, shape=21, fill="white") + # 21 is filled circle
+ xlab("Machining lenght (mm)") +
+ ylab("Machining forces (N)") +
+ scale_colour_hue(name="Cutting Velocity",
+ breaks=c("30", "40"),
+ labels=c("Vc = 30 m/min", " Vc = 40 m/min "),
+ l=40) +
+ ggtitle("The Effect of Cutting Velocity on Machining Forces") +
+ expand_limits(y=0) +
+ scale_y_continuous(breaks=0:750*50) +
+ theme_bw() +
+ theme(legend.justification=c(1,0),
+ legend.position=c(1,0))
Error: Continuous value supplied to discrete scale
And I receive this message:
"Error: Continuous value supplied to discrete scale"!
Vc should be a factor if you want two values in the legend. You were getting that error because you were trying to scale Vc as discrete (breaks = c(30, 40)) when it was of type integer
ggplot(dadosc, aes(x=Lu, y=Fres, colour=factor(Vc))) +
...
Related
Assume a data.frame as follows:
df <- data.frame(name = paste0("Person",rep(1:30)),
number = sample(1:100, 30, replace=TRUE),
focus = sample(1:500, 30, replace=TRUE))
I want to split the above data.frame into 9 groups, each with 9 observations. Each person can be assigned to multiple groups (replacement), so that all 9 groups have all 10 observations (since 9 groups x 9 observations require 81 rows while the df has only 30).
The output will ideally be a large list of 1000 data.frames.
Are there any efficient ways of doing this? This is just a sample data.frame. The actual df has ~10k rows and will require 1000 groups each with 30 rows.
Many thanks.
Is this what you are looking for?
res <- replicate(1000, df[sample.int(nrow(df), 30, TRUE), ], FALSE)
df I used
df <- data.frame(name = paste0("Person",rep(1:1e4)),
number = sample(1:100, 1e4, replace=TRUE),
focus = sample(1:500, 1e4, replace=TRUE))
Output
> res[1:3]
[[1]]
name number focus
529 Person529 5 351
9327 Person9327 4 320
1289 Person1289 78 164
8157 Person8157 46 183
6939 Person6939 38 61
4066 Person4066 26 103
132 Person132 34 39
6576 Person6576 36 397
5376 Person5376 47 456
6123 Person6123 10 18
5318 Person5318 39 42
6355 Person6355 62 212
340 Person340 90 256
7050 Person7050 19 198
1500 Person1500 42 208
175 Person175 34 30
3751 Person3751 99 441
3813 Person3813 93 492
7428 Person7428 72 142
6840 Person6840 58 45
6501 Person6501 95 499
5124 Person5124 16 159
3373 Person3373 38 36
5622 Person5622 40 203
8761 Person8761 9 225
6252 Person6252 75 444
4502 Person4502 58 337
5344 Person5344 24 233
4036 Person4036 59 265
8764 Person8764 45 1
[[2]]
name number focus
8568 Person8568 87 360
3968 Person3968 67 468
4481 Person4481 46 140
8055 Person8055 73 286
7794 Person7794 92 336
1110 Person1110 6 434
6736 Person6736 4 58
9758 Person9758 60 49
9356 Person9356 89 300
9719 Person9719 100 366
4183 Person4183 5 124
1394 Person1394 87 346
2642 Person2642 81 449
3592 Person3592 65 358
579 Person579 21 395
9551 Person9551 39 495
4946 Person4946 73 32
4081 Person4081 98 270
4062 Person4062 27 150
7698 Person7698 52 436
5388 Person5388 89 177
9598 Person9598 91 474
8624 Person8624 3 464
392 Person392 82 483
5710 Person5710 43 293
4942 Person4942 99 350
3333 Person3333 89 91
6789 Person6789 99 259
7115 Person7115 100 320
1431 Person1431 77 263
[[3]]
name number focus
201 Person201 100 272
4674 Person4674 27 410
9728 Person9728 18 275
9422 Person9422 2 396
9783 Person9783 45 37
5552 Person5552 76 109
3871 Person3871 49 277
3411 Person3411 64 24
5799 Person5799 29 131
626 Person626 31 122
3103 Person3103 2 76
8043 Person8043 90 384
3157 Person3157 90 392
7093 Person7093 11 169
2779 Person2779 83 2
2601 Person2601 77 122
9003 Person9003 50 163
9653 Person9653 4 235
9361 Person9361 100 391
4273 Person4273 83 383
4725 Person4725 35 436
2157 Person2157 71 486
3995 Person3995 25 258
3735 Person3735 24 221
303 Person303 81 407
4838 Person4838 64 198
6926 Person6926 90 417
6267 Person6267 82 284
8570 Person8570 67 317
2670 Person2670 21 342
I have this dataframe
time power hr fr VE VO2 VCO2 id
1 1462.0104166666667 25 90 24 20 632 549 LM01-PRD-S1
2 1462.0194444444444 25 92 23 21 679 597 LM01-PRD-S1
3 1462.0305555555556 25 93 22 21 675 607 LM01-PRD-S1
4 1462.0416666666667 25 93 20 19 680 577 LM01-PRD-S1
5 1462.0520833333333 40 96 20 22 745 660 LM01-PRD-S1
6 1462.0618055555556 40 98 21 22 764 675 LM01-PRD-S1
7 1462.0722222222223 40 100 21 22 789 703 LM01-PRD-S1
8 1462.0826388888888 40 100 20 23 805 734 LM01-PRD-S1
9 1462.09375 55 105 22 26 911 843 LM01-PRD-S1
10 1462.1041666666667 55 105 20 25 881 831 LM01-PRD-S1
11 1462.1131944444444 55 109 19 25 895 847 LM01-PRD-S1
12 1462.1229166666667 55 112 21 25 908 868 LM01-PRD-S1
13 1462.1347222222223 70 120 21 28 981 947 LM01-PRD-S1
14 1462.1451388888888 70 120 21 29 1044 1021 LM01-PRD-S1
15 1462.1548611111111 70 122 22 27 1066 1031 LM01-PRD-S1
16 1462.1652777777779 70 127 19 30 1136 1122 LM01-PRD-S1
17 1462.1770833333333 85 130 20 32 1181 1218 LM01-PRD-S1
18 1462.1868055555556 85 141 21 32 1194 1216 LM01-PRD-S1
19 1462.1958333333334 85 139 22 34 1231 1295 LM01-PRD-S1
20 1462.2069444444444 85 139 19 32 1193 1268 LM01-PRD-S1
21 1462.2166666666667 100 139 21 31 1192 1274 LM01-PRD-S1
22 1462.2291666666667 100 146 21 38 1363 1460 LM01-PRD-S1
23 1462.2395833333333 100 150 28 50 1551 1801 LM01-PRD-S1
24 1462.2479166666667 100 148 30 51 1499 1810 LM01-PRD-S1
25 1462.2597222222223 115 150 30 55 1564 1883 LM01-PRD-S1
26 1462.2708333333333 115 153 31 56 1544 1892 LM01-PRD-S1
27 1462.2805555555556 115 157 33 59 1545 2012 LM01-PRD-S1
28 1462.2881944444443 115 157 34 62 1647 2091 LM01-PRD-S1
29 NA NA NA RÈcupÈ ration NA NA LM01-PRD-S1
30 1462.0027777777777 65 157 39 61 1466 1940 LM01-PRD-S1
31 1462.0131944444445 20 153 32 58 1518 1939 LM01-PRD-S1
32 1462.0236111111112 20 148 28 50 1422 1748 LM01-PRD-S1
33 1462.0333333333333 20 144 26 46 1222 1555 LM01-PRD-S1
34 1462.0430555555556 20 141 22 37 963 1209 LM01-PRD-S1
35 1462.0541666666666 20 133 22 42 1165 1464 LM01-PRD-S1
36 1462.0645833333333 20 133 24 47 1021 1384 LM01-PRD-S1
37 1462.0743055555556 20 130 22 40 914 1228 LM01-PRD-S1
38 1462.0854166666666 20 130 23 38 847 1128 LM01-PRD-S1
39 1462.0944444444444 20 120 18 32 755 998 LM01-PRD-S1
40 1462.1069444444445 0 117 17 29 674 904 LM01-PRD-S1
41 1462.1173611111112 0 115 20 27 587 805 LM01-PRD-S1
42 1462.1277777777777 0 113 20 28 536 803 LM01-PRD-S1
43 1462.1368055555556 0 112 18 26 489 744 LM01-PRD-S1
44 1462.1479166666666 0 110 18 25 457 703 LM01-PRD-S1
45 1462.1590277777777 0 103 19 23 419 633 LM01-PRD-S1
46 1462.16875 0 103 17 24 479 672 LM01-PRD-S1
47 1462.1791666666666 0 103 19 21 423 560 LM01-PRD-S1
48 1462.1902777777777 0 100 19 22 459 609 LM01-PRD-S1
49 1462.1993055555556 0 101 18 22 440 599 LM01-PRD-S1
50 1462.004861111111 0 98 18 22 410 572 LM01-PRD-S1
51 1.0416666666666666E-2 35 102 16 18 659 576 LB02-PRD-S1
52 1.9444444444444445E-2 35 101 17 19 729 613 LB02-PRD-S1
53 3.0555555555555555E-2 35 105 15 28 977 851 LB02-PRD-S1
54 4.0972222222222222E-2 35 96 16 28 886 852 LB02-PRD-S1
55 4.9999999999999996E-2 50 90 16 16 593 504 LB02-PRD-S1
56 6.1111111111111116E-2 50 106 18 17 737 552 LB02-PRD-S1
57 7.2222222222222229E-2 50 108 19 23 1053 775 LB02-PRD-S1
58 8.2638888888888887E-2 50 117 17 30 1236 1008 LB02-PRD-S1
59 9.2361111111111116E-2 65 113 18 29 1181 983 LB02-PRD-S1
60 0.10347222222222223 65 114 15 31 1167 1016 LB02-PRD-S1
61 0.11388888888888889 65 118 16 31 1167 1052 LB02-PRD-S1
62 0.12430555555555556 65 114 17 28 1104 967 LB02-PRD-S1
63 0.13402777777777777 80 120 17 35 1318 1172 LB02-PRD-S1
64 0.1451388888888889 80 117 16 32 1236 1153 LB02-PRD-S1
65 0.15486111111111112 80 122 17 31 1168 1094 LB02-PRD-S1
66 0.16458333333333333 80 122 17 34 1312 1205 LB02-PRD-S1
67 0.1763888888888889 95 126 18 37 1311 1274 LB02-PRD-S1
68 0.18611111111111112 95 129 18 35 1248 1201 LB02-PRD-S1
69 0.19722222222222222 95 131 15 33 1275 1196 LB02-PRD-S1
70 0.20625000000000002 95 134 18 39 1444 1381 LB02-PRD-S1
71 0.21736111111111112 110 134 19 43 1539 1472 LB02-PRD-S1
72 0.22847222222222222 110 136 19 41 1417 1406 LB02-PRD-S1
73 0.2388888888888889 110 137 20 43 1496 1437 LB02-PRD-S1
74 0.25 110 139 20 44 1561 1539 LB02-PRD-S1
75 0.25972222222222224 125 142 21 46 1561 1560 LB02-PRD-S1
76 0.26944444444444443 125 146 21 46 1535 1552 LB02-PRD-S1
77 0.28055555555555556 125 148 23 51 1698 1703 LB02-PRD-S1
78 0.29166666666666669 125 150 23 53 1725 1776 LB02-PRD-S1
79 0.30069444444444443 140 151 22 52 1726 1760 LB02-PRD-S1
80 0.31180555555555556 140 151 23 53 1713 1763 LB02-PRD-S1
81 0.32222222222222224 140 153 25 55 1807 1836 LB02-PRD-S1
82 0.33263888888888887 140 155 26 58 1897 1941 LB02-PRD-S1
83 0.34375 155 153 26 59 1929 1963 LB02-PRD-S1
84 0.35347222222222219 155 157 26 57 1843 1908 LB02-PRD-S1
85 0.36388888888888887 155 160 28 65 1942 2065 LB02-PRD-S1
86 0.375 155 164 26 64 2011 2131 LB02-PRD-S1
87 0.38472222222222219 170 166 26 65 2048 2178 LB02-PRD-S1
88 0.39583333333333331 170 166 26 64 2069 2171 LB02-PRD-S1
89 0.40625 170 169 25 64 2165 2269 LB02-PRD-S1
90 0.41666666666666669 170 169 28 76 2328 2539 LB02-PRD-S1
91 0.42638888888888887 185 169 30 76 2189 2449 LB02-PRD-S1
92 0.4368055555555555 185 171 29 73 2225 2411 LB02-PRD-S1
93 0.44722222222222219 185 171 29 68 2170 2292 LB02-PRD-S1
94 0.45763888888888887 185 171 31 82 2458 2712 LB02-PRD-S1
95 0.4680555555555555 200 171 33 89 2443 2780 LB02-PRD-S1
96 0.47847222222222219 200 173 33 87 2465 2784 LB02-PRD-S1
97 0.48888888888888887 200 176 32 88 2536 2853 LB02-PRD-S1
98 0.5 200 176 34 93 2571 2899 LB02-PRD-S1
99 0.51041666666666663 215 176 36 98 2529 2924 LB02-PRD-S1
100 0.52083333333333337 215 179 36 105 2602 3087 LB02-PRD-S1
101 0.53125 215 179 39 111 2795 3282 LB02-PRD-S1
102 0.54097222222222219 215 181 40 118 2679 3240 LB02-PRD-S1
103 0.55208333333333337 230 179 40 113 2649 3160 LB02-PRD-S1
104 0.56180555555555556 230 179 41 111 2601 3055 LB02-PRD-S1
105 0.57291666666666663 230 176 42 116 2639 3129 LB02-PRD-S1
106 0.58263888888888882 230 181 43 126 2683 3277 LB02-PRD-S1
107 0.59375 245 181 47 123 2597 3160 LB02-PRD-S1
108 0.60416666666666663 245 181 48 128 2482 3122 LB02-PRD-S1
109 NA NA NA RÈcupÈ ration NA NA LB02-PRD-S1
110 9.7222222222222224E-3 20 179 42 108 2320 2830 LB02-PRD-S1
111 2.013888888888889E-2 20 173 40 106 2134 2594 LB02-PRD-S1
112 3.125E-2 20 171 37 103 1869 2531 LB02-PRD-S1
113 4.0972222222222222E-2 20 166 38 97 1438 2207 LB02-PRD-S1
114 5.1388888888888894E-2 20 164 36 88 1192 1918 LB02-PRD-S1
115 6.1805555555555558E-2 20 155 37 81 1121 1746 LB02-PRD-S1
116 7.0833333333333331E-2 20 142 32 71 1072 1585 LB02-PRD-S1
117 8.1944444444444445E-2 20 151 26 56 961 1345 LB02-PRD-S1
118 9.2361111111111116E-2 20 148 28 58 996 1367 LB02-PRD-S1
119 0.10277777777777779 20 144 24 49 858 1189 LB02-PRD-S1
120 0.11319444444444444 20 141 25 49 722 1053 LB02-PRD-S1
121 0.125 0 136 25 42 611 895 LB02-PRD-S1
122 0.13472222222222222 0 131 26 42 642 893 LB02-PRD-S1
123 0.1451388888888889 0 129 28 44 612 874 LB02-PRD-S1
124 0.15555555555555556 0 126 24 36 544 728 LB02-PRD-S1
125 0.16527777777777777 0 127 26 40 658 840 LB02-PRD-S1
126 0.1763888888888889 0 130 23 31 511 665 LB02-PRD-S1
127 0.18611111111111112 0 126 24 39 646 815 LB02-PRD-S1
128 0.19652777777777777 0 120 25 38 527 716 LB02-PRD-S1
129 0.20694444444444446 0 120 24 36 509 684 LB02-PRD-S1
130 1462.0104166666667 25 101 20 18 712 584 GC03-PRD-S1
131 1462.0208333333333 25 99 20 17 673 551 GC03-PRD-S1
132 1462.03125 25 97 20 17 686 559 GC03-PRD-S1
133 1462.0402777777779 25 96 20 16 639 524 GC03-PRD-S1
134 1462.0506944444444 40 99 19 16 647 518 GC03-PRD-S1
135 1462.0604166666667 40 105 19 16 669 543 GC03-PRD-S1
136 1462.0729166666667 40 107 21 18 723 598 GC03-PRD-S1
137 1462.0826388888888 40 107 25 19 746 605 GC03-PRD-S1
138 1462.0916666666667 55 109 23 20 775 645 GC03-PRD-S1
139 1462.1020833333334 55 111 20 20 780 671 GC03-PRD-S1
140 1462.1118055555555 55 116 21 21 811 710 GC03-PRD-S1
141 1462.1243055555556 55 113 17 22 858 765 GC03-PRD-S1
142 1462.1340277777779 70 117 21 23 900 789 GC03-PRD-S1
143 1462.1458333333333 70 117 20 23 953 843 GC03-PRD-S1
144 1462.15625 70 120 20 25 980 882 GC03-PRD-S1
145 1462.1652777777779 70 122 22 26 1000 916 GC03-PRD-S1
146 1462.1763888888888 85 122 23 27 1049 961 GC03-PRD-S1
147 1462.1868055555556 85 126 23 28 1072 992 GC03-PRD-S1
148 1462.1965277777779 85 131 22 29 1110 1056 GC03-PRD-S1
149 1462.2076388888888 85 130 22 30 1066 1047 GC03-PRD-S1
150 1462.2173611111111 100 129 21 28 1166 1057 GC03-PRD-S1
151 1462.2284722222223 100 137 27 34 1346 1247 GC03-PRD-S1
152 1462.2395833333333 100 137 22 34 1272 1261 GC03-PRD-S1
153 1462.25 100 136 20 33 1222 1235 GC03-PRD-S1
154 1462.2590277777779 115 139 23 36 1321 1321 GC03-PRD-S1
155 1462.2701388888888 115 142 23 37 1340 1377 GC03-PRD-S1
156 1462.2798611111111 115 144 24 38 1362 1418 GC03-PRD-S1
157 1462.2909722222223 115 150 27 44 1470 1579 GC03-PRD-S1
158 1462.3013888888888 130 151 27 45 1466 1618 GC03-PRD-S1
159 1462.3125 130 153 31 54 1686 1875 GC03-PRD-S1
160 1462.3222222222223 130 155 33 59 1679 1998 GC03-PRD-S1
161 1462.3326388888888 130 157 33 59 1676 2021 GC03-PRD-S1
162 1462.3423611111111 145 157 33 61 1700 2041 GC03-PRD-S1
163 1462.3534722222223 145 160 35 64 1764 2120 GC03-PRD-S1
164 1462.3638888888888 145 160 36 67 1765 2182 GC03-PRD-S1
165 1462.3743055555556 145 162 40 71 1762 2208 GC03-PRD-S1
166 1462.0006944444444 145 162 39 69 1754 2208 GC03-PRD-S1
167 NA NA NA RÈcupÈ ration NA NA GC03-PRD-S1
168 1462.0097222222223 20 155 38 68 1687 2124 GC03-PRD-S1
169 1462.0194444444444 20 148 39 67 1576 1996 GC03-PRD-S1
170 1462.0298611111111 20 142 35 62 1390 1842 GC03-PRD-S1
171 1462.0409722222223 20 136 35 58 1189 1632 GC03-PRD-S1
172 1462.05 20 127 26 46 991 1337 GC03-PRD-S1
173 1462.0604166666667 20 117 21 26 776 896 GC03-PRD-S1
174 1462.0715277777779 20 115 22 31 855 1012 GC03-PRD-S1
175 1462.0819444444444 20 111 23 30 783 950 GC03-PRD-S1
176 1462.0930555555556 20 109 23 30 756 939 GC03-PRD-S1
177 1462.1020833333334 20 100 23 28 702 870 GC03-PRD-S1
178 1462.1131944444444 20 104 23 29 685 853 GC03-PRD-S1
179 1462.1236111111111 20 90 19 20 471 594 GC03-PRD-S1
180 1462.1340277777779 0 96 20 20 494 607 GC03-PRD-S1
181 1462.1444444444444 0 94 20 19 439 559 GC03-PRD-S1
182 1462.1548611111111 0 93 20 19 425 561 GC03-PRD-S1
183 1462.1638888888888 0 90 19 17 357 480 GC03-PRD-S1
184 1462.175 0 91 18 16 345 443 GC03-PRD-S1
185 1462.1854166666667 0 96 21 18 370 480 GC03-PRD-S1
186 1462.1958333333334 0 92 20 16 324 420 GC03-PRD-S1
187 1462.2076388888888 0 92 20 16 324 414 GC03-PRD-S1
188 1462.0083333333334 0 93 20 15 309 391 GC03-PRD-S1
189 1462.0104166666667 60 127 27 40 1267 1274 GT04-PRD-S1
190 1462.0201388888888 60 131 29 40 1264 1274 GT04-PRD-S1
191 1462.0305555555556 60 133 30 40 1281 1298 GT04-PRD-S1
192 1462.0402777777779 60 134 29 42 1304 1360 GT04-PRD-S1
193 1462.0513888888888 80 134 28 40 1274 1324 GT04-PRD-S1
194 1462.0625 80 137 28 40 1337 1335 GT04-PRD-S1
195 1462.0729166666667 80 144 29 45 1485 1501 GT04-PRD-S1
196 1462.0833333333333 80 144 30 50 1573 1630 GT04-PRD-S1
197 1462.0930555555556 100 148 30 47 1380 1478 GT04-PRD-S1
198 1462.1034722222223 100 150 30 49 1520 1576 GT04-PRD-S1
199 1462.1145833333333 100 153 31 50 1553 1589 GT04-PRD-S1
200 1462.1243055555556 100 151 31 55 1735 1818 GT04-PRD-S1
201 1462.1340277777779 120 153 32 65 1905 2146 GT04-PRD-S1
202 1462.1444444444444 120 151 32 62 1748 2026 GT04-PRD-S1
203 1462.1555555555556 120 160 31 61 1799 2041 GT04-PRD-S1
204 1462.1652777777779 120 160 30 64 1810 2105 GT04-PRD-S1
205 1462.1756944444444 140 164 33 73 1895 2314 GT04-PRD-S1
206 1462.1861111111111 140 162 33 72 1966 2345 GT04-PRD-S1
207 1462.1972222222223 140 166 36 79 2021 2470 GT04-PRD-S1
208 1462.2083333333333 140 166 35 76 2022 2450 GT04-PRD-S1
209 1462.2180555555556 160 164 37 78 2115 2491 GT04-PRD-S1
210 1462.2284722222223 160 169 40 82 2147 2583 GT04-PRD-S1
211 1462.2388888888888 160 169 38 83 2190 2647 GT04-PRD-S1
212 1462.2493055555556 160 173 38 85 2202 2713 GT04-PRD-S1
213 1462.2604166666667 180 171 38 88 2332 2837 GT04-PRD-S1
214 1462.2701388888888 180 171 41 95 2321 2937 GT04-PRD-S1
215 1462.28125 180 176 39 94 2358 2994 GT04-PRD-S1
216 1462.2909722222223 180 176 42 104 2339 3086 GT04-PRD-S1
217 1462.2979166666667 200 176 44 105 2444 3186 GT04-PRD-S1
218 NA NA NA RÈcupÈ ration NA NA GT04-PRD-S1
219 1462.0034722222222 125 179 42 97 2304 2957 GT04-PRD-S1
220 1462.0131944444445 30 171 38 92 2266 2900 GT04-PRD-S1
221 1462.0236111111112 30 166 36 93 2136 2851 GT04-PRD-S1
222 1462.0347222222222 30 166 35 91 1829 2619 GT04-PRD-S1
223 1462.0444444444445 30 162 34 83 1576 2306 GT04-PRD-S1
224 1462.0548611111112 30 160 31 65 1411 1904 GT04-PRD-S1
225 1462.0652777777777 30 155 36 78 1439 2013 GT04-PRD-S1
226 1462.0763888888889 30 153 34 69 1337 1832 GT04-PRD-S1
227 1462.0861111111112 30 153 34 66 1283 1716 GT04-PRD-S1
228 1462.0965277777777 30 144 28 49 1012 1303 GT04-PRD-S1
229 1462.1069444444445 30 134 25 41 897 1147 GT04-PRD-S1
230 1462.1180555555557 0 130 25 40 756 1051 GT04-PRD-S1
231 1462.1284722222222 0 126 20 28 500 741 GT04-PRD-S1
232 1462.1381944444445 0 123 23 27 533 712 GT04-PRD-S1
233 1462.1486111111112 0 123 23 29 548 737 GT04-PRD-S1
234 1462.1590277777777 0 117 24 24 415 560 GT04-PRD-S1
235 1462.16875 0 114 21 27 610 728 GT04-PRD-S1
236 1462.1798611111112 0 111 19 23 508 612 GT04-PRD-S1
237 1462.1902777777777 0 113 21 26 548 666 GT04-PRD-S1
238 1462.2006944444445 0 113 23 27 552 683 GT04-PRD-S1
239 1462.0020833333333 0 114 22 28 547 702 GT04-PRD-S1
I would like to remove all rows after words "ration" in the column VE BUT only for each id.
Meaning that I would like to remove lines 29 to 50, 109 to 129, 167 to 188, and from 218 to 239.
The word "ration" is repeated several times, and please take into account that I have several ID (I can not include it in my question because it is too long).
I tried to create at the end of each id but it did not work.
Thank you for your help!
With dplyr:
data %>%
group_by(id) %>%
filter(cumsum(VE == "ration") == 0)
Assuming for all the id you'll have a row with "ration", you can use dplyr like
library(dplyr)
df %>% group_by(id) %>% slice(1:(which.max(VE == "ration") -1))
I conducted Kaplan Meier analysis in R looking at he survival of fibres in a fatigue test. I have not predefined the upper limit for the restricted mean. How does R calculate or decide the upper limit in order to calculate the restricted mean?
I am using the following code:
fit = survfit(Surv(cyclicdata[,1], cyclicdata[,2]) ~ cyclicdata[,3])
print(fit, print.rmean=TRUE,rmean="common")
From experience with this calculation over the past few years, I believe that the restricted mean is by default calculated as the mean of the longest lives from each group.
For example, I have run into this with two groups having lives as below:
Group 1 Lives:
22 23 25 26 30 32 32 34 37 38 40 43 45 48 48 54
56 59 60 62 70 72 73 73 76 77 78 78 82 86 86 92
92 92 95 98 99 102 104 106 107 112 114 114 115 119 120 123
132 134 135 151 154 157 169 180
Group 2 Lives:
5 7 30 41 44 56 59 64 67 79 86 101 110 120 120 123
125 138 150 163 163 164 167 199 201 214 235 236 237 242 245 270
272 274 282 283 284 287 296 300 300 310 314 321 322 325 340 342
345 355 371 375 376 398 414 419 422 428 442 444 449 474 511 516 549
552 560 563 581 608 618 628 637 638 675 685 702 782 782 817 885
886 946 947 951
When I run my survival fit and print the output, I get this:
* restricted mean with upper limit = 566
This is equal to:
> mean(max(c(Group1$Lives,Group2$Lives)))
[1] 565.5
or
> (951+180)/2
[1] 565.5
I would like to merge and sum the values of each row that contains duplicated IDs.
For example, the data frame below contains a duplicated symbol 'LOC102723897'. I would like to merge these two rows and sum the value within each column, so that one row appears for the duplicated symbol.
> head(y$genes)
SM01 SM02 SM03 SM04 SM05 SM06 SM07 SM08 SM09 SM10 SM11 SM12 SM13 SM14 SM15 SM16 SM17 SM18 SM19 SM20 SM21 SM22
1 32 29 23 20 27 105 80 64 83 80 94 58 122 76 78 70 34 32 45 42 138 30
2 246 568 437 343 304 291 542 457 608 433 218 329 483 376 410 296 550 533 537 473 296 382
3 30 23 30 13 20 18 23 13 31 11 15 27 36 21 23 25 26 27 37 27 31 16
4 1450 2716 2670 2919 2444 1668 2923 2318 3867 2084 1121 2175 3022 2308 2541 1613 2196 1851 2843 2078 2180 1902
5 288 366 327 334 314 267 550 410 642 475 219 414 679 420 425 308 359 406 550 398 399 268
6 34 59 62 68 42 31 49 45 62 51 40 32 30 39 41 75 54 59 83 99 37 37
SM23 SM24 SM25 SM26 SM27 SM28 SM29 SM30 Symbol
1 41 23 57 160 84 67 87 113 LOC102723897
2 423 535 624 304 568 495 584 603 LINC01128
3 31 21 49 13 33 31 14 31 LINC00115
4 2453 3041 3590 2343 3450 3725 3336 3850 NOC2L
5 403 347 468 478 502 563 611 577 LOC102723897
6 45 51 56 107 79 105 92 131 PLEKHN1
> dim(y)
[1] 12928 30
I attempted using plyr to merge rows based on the 'Symbol' column, but it's not working.
> ddply(y$genes,"Symbol",numcolwise(sum))
> dim(y)
[1] 12928 30
> length(y$genes$Symbol)
[1] 12928
> length(unique(y$genes$Symbol))
[1] 12896
You group-by on Symbol and sum all columns.
library(dplyr)
df %>% group_by(Symbol) %>% summarise_all(sum)
using data.table
library(data.table)
setDT(df)[ , lapply(.SD, sum),by="Symbol"]
We can just use aggregate from base R
aggregate(.~ Symbol, df, FUN = sum)
I am trying to create a heat map using ggplot. I am using the following code:
ggplot(ff, aes(x=Days, y=variable)) +
geom_tile(aes(fill=value),colour="blue") +
scale_fill_gradient(limits=c(-1,1),low="blue",high="red",na.value="white")
Here are my questions:
How do I manipulate the scale unit in geom_tile ( so that instead of creating the heat map every 0.2 it will use a step of every 0.1 or 0.05)
Is it possible to use a richer color schema that I used ( for example some predefined color schema like in the heatmap function
There are NA in my dataframe that I render as white. Is there a better way to deal with NA and make it transparent?
The data ff is as follows:
Days variable value
1 4 Short.Range.Days..2 -0.81747353
2 6 Short.Range.Days..2 -0.548692305
3 8 Short.Range.Days..2 -0.344287337
4 10 Short.Range.Days..2 -0.214313697
5 12 Short.Range.Days..2 -0.166991021
6 14 Short.Range.Days..2 -0.087645101
7 16 Short.Range.Days..2 0.003306877
8 18 Short.Range.Days..2 0.014363975
9 20 Short.Range.Days..2 0.022512668
10 22 Short.Range.Days..2 0.040381662
11 24 Short.Range.Days..2 0.062312058
12 26 Short.Range.Days..2 0.079032057
13 28 Short.Range.Days..2 0.062894323
14 30 Short.Range.Days..2 0.042261172
15 32 Short.Range.Days..2 0.032980453
16 34 Short.Range.Days..2 0.040095505
17 36 Short.Range.Days..2 0.039992051
18 38 Short.Range.Days..2 0.006244882
19 40 Short.Range.Days..2 -0.005749414
20 42 Short.Range.Days..2 -0.008062039
21 44 Short.Range.Days..2 -0.023538994
22 46 Short.Range.Days..2 0.000465245
23 48 Short.Range.Days..2 0.011341621
24 50 Short.Range.Days..2 0.031610377
25 52 Short.Range.Days..2 0.043711238
26 54 Short.Range.Days..2 0.052674899
27 56 Short.Range.Days..2 0.052963846
28 58 Short.Range.Days..2 0.042461133
29 60 Short.Range.Days..2 0.041458926
30 4 Short.Range.Days..4 NA
31 6 Short.Range.Days..4 -0.564954032
32 8 Short.Range.Days..4 -0.376387471
33 10 Short.Range.Days..4 -0.212740266
34 12 Short.Range.Days..4 -0.107961718
35 14 Short.Range.Days..4 -0.072863517
36 16 Short.Range.Days..4 -0.013560192
37 18 Short.Range.Days..4 -0.014244693
38 20 Short.Range.Days..4 0.003714455
39 22 Short.Range.Days..4 0.018009887
40 24 Short.Range.Days..4 0.038299314
41 26 Short.Range.Days..4 0.048826919
42 28 Short.Range.Days..4 0.042215816
43 30 Short.Range.Days..4 0.026936439
44 32 Short.Range.Days..4 0.015311212
45 34 Short.Range.Days..4 0.024097239
46 36 Short.Range.Days..4 -0.004329243
47 38 Short.Range.Days..4 -0.001842634
48 40 Short.Range.Days..4 0.000926598
49 42 Short.Range.Days..4 -0.011272775
50 44 Short.Range.Days..4 -0.009693908
51 46 Short.Range.Days..4 -0.001668079
52 48 Short.Range.Days..4 0.016156964
53 50 Short.Range.Days..4 0.042374732
54 52 Short.Range.Days..4 0.046776012
55 54 Short.Range.Days..4 0.045923267
56 56 Short.Range.Days..4 0.050384377
57 58 Short.Range.Days..4 0.045215707
58 60 Short.Range.Days..4 0.047902343
59 4 Short.Range.Days..6 NA
60 6 Short.Range.Days..6 NA
61 8 Short.Range.Days..6 -0.441329726
62 10 Short.Range.Days..6 -0.238801239
63 12 Short.Range.Days..6 -0.15476164
64 14 Short.Range.Days..6 -0.059414124
65 16 Short.Range.Days..6 -0.061674965
66 18 Short.Range.Days..6 -0.025409294
67 20 Short.Range.Days..6 -0.009152774
68 22 Short.Range.Days..6 -0.001703372
69 24 Short.Range.Days..6 -0.000247112
70 26 Short.Range.Days..6 0.0253183
71 28 Short.Range.Days..6 0.039929109
72 30 Short.Range.Days..6 -0.001386462
73 32 Short.Range.Days..6 0.008182091
74 34 Short.Range.Days..6 0.029240807
75 36 Short.Range.Days..6 -0.002854685
76 38 Short.Range.Days..6 -0.007379733
77 40 Short.Range.Days..6 -0.004630816
78 42 Short.Range.Days..6 -0.011870576
79 44 Short.Range.Days..6 -0.015306308
80 46 Short.Range.Days..6 -0.005366024
81 48 Short.Range.Days..6 0.006607034
82 50 Short.Range.Days..6 0.018644749
83 52 Short.Range.Days..6 0.026165148
84 54 Short.Range.Days..6 0.036606456
85 56 Short.Range.Days..6 0.048953922
86 58 Short.Range.Days..6 0.043359266
87 60 Short.Range.Days..6 0.038203532
88 4 Short.Range.Days..8 NA
89 6 Short.Range.Days..8 NA
90 8 Short.Range.Days..8 NA
91 10 Short.Range.Days..8 -0.381950109
92 12 Short.Range.Days..8 -0.218592498
93 14 Short.Range.Days..8 -0.101448266
94 16 Short.Range.Days..8 -0.046656489
95 18 Short.Range.Days..8 -0.042095639
96 20 Short.Range.Days..8 -0.026922636
97 22 Short.Range.Days..8 -0.015991528
98 24 Short.Range.Days..8 -0.011757444
99 26 Short.Range.Days..8 0.007997248
100 28 Short.Range.Days..8 0.036514373
101 30 Short.Range.Days..8 0.006496822
102 32 Short.Range.Days..8 -0.004494976
103 34 Short.Range.Days..8 0.013963243
104 36 Short.Range.Days..8 0.022236117
105 38 Short.Range.Days..8 0.040222229
106 40 Short.Range.Days..8 0.024015061
107 42 Short.Range.Days..8 0.014655371
108 44 Short.Range.Days..8 -0.003435171
109 46 Short.Range.Days..8 0.004921792
110 48 Short.Range.Days..8 0.025002607
111 50 Short.Range.Days..8 0.039823008
112 52 Short.Range.Days..8 0.028497197
113 54 Short.Range.Days..8 0.033465104
114 56 Short.Range.Days..8 0.037187076
115 58 Short.Range.Days..8 0.035133715
116 60 Short.Range.Days..8 0.044956739
117 4 Short.Range.Days..10 NA
118 6 Short.Range.Days..10 NA
119 8 Short.Range.Days..10 NA
120 10 Short.Range.Days..10 NA
121 12 Short.Range.Days..10 -0.315010077
122 14 Short.Range.Days..10 -0.159081521
123 16 Short.Range.Days..10 -0.071303675
124 18 Short.Range.Days..10 -0.084264406
125 20 Short.Range.Days..10 -0.055602557
126 22 Short.Range.Days..10 -0.015130798
127 24 Short.Range.Days..10 0.005610983
128 26 Short.Range.Days..10 0.009360452
129 28 Short.Range.Days..10 0.00674219
130 30 Short.Range.Days..10 0.002157462
131 32 Short.Range.Days..10 0.00349763
132 34 Short.Range.Days..10 -0.001412894
133 36 Short.Range.Days..10 0.003717493
134 38 Short.Range.Days..10 0.002120068
135 40 Short.Range.Days..10 0.006367466
136 42 Short.Range.Days..10 -0.000411258
137 44 Short.Range.Days..10 0.012566411
138 46 Short.Range.Days..10 0.014464965
139 48 Short.Range.Days..10 0.031026233
140 50 Short.Range.Days..10 0.04388952
141 52 Short.Range.Days..10 0.042532374
142 54 Short.Range.Days..10 0.06035085
143 56 Short.Range.Days..10 0.054378445
144 58 Short.Range.Days..10 0.05048477
145 60 Short.Range.Days..10 0.064256151
146 4 Short.Range.Days..12 NA
147 6 Short.Range.Days..12 NA
148 8 Short.Range.Days..12 NA
149 10 Short.Range.Days..12 NA
150 12 Short.Range.Days..12 NA
151 14 Short.Range.Days..12 -0.227372691
152 16 Short.Range.Days..12 -0.156908358
153 18 Short.Range.Days..12 -0.097853165
154 20 Short.Range.Days..12 -0.031213742
155 22 Short.Range.Days..12 -0.002203366
156 24 Short.Range.Days..12 0.027172361
157 26 Short.Range.Days..12 -0.002829266
158 28 Short.Range.Days..12 0.003026913
159 30 Short.Range.Days..12 0.005941515
160 32 Short.Range.Days..12 0.005652349
161 34 Short.Range.Days..12 0.005849875
162 36 Short.Range.Days..12 0.008607215
163 38 Short.Range.Days..12 -0.008046473
164 40 Short.Range.Days..12 -0.003125555
165 42 Short.Range.Days..12 0.018868117
166 44 Short.Range.Days..12 0.017476927
167 46 Short.Range.Days..12 0.011919605
168 48 Short.Range.Days..12 0.021178085
169 50 Short.Range.Days..12 0.041199466
170 52 Short.Range.Days..12 0.034283292
171 54 Short.Range.Days..12 0.029778266
172 56 Short.Range.Days..12 0.039525157
173 58 Short.Range.Days..12 0.046134386
174 60 Short.Range.Days..12 0.065925521
175 4 Short.Range.Days..14 NA
176 6 Short.Range.Days..14 NA
177 8 Short.Range.Days..14 NA
178 10 Short.Range.Days..14 NA
179 12 Short.Range.Days..14 NA
180 14 Short.Range.Days..14 NA
181 16 Short.Range.Days..14 -0.261691083
182 18 Short.Range.Days..14 -0.142068675
183 20 Short.Range.Days..14 -0.074500031
184 22 Short.Range.Days..14 -0.012082714
185 24 Short.Range.Days..14 0.005659554
186 26 Short.Range.Days..14 0.012468794
187 28 Short.Range.Days..14 -0.002796818
188 30 Short.Range.Days..14 -0.007217387
189 32 Short.Range.Days..14 -0.011216542
190 34 Short.Range.Days..14 -0.012975914
191 36 Short.Range.Days..14 0.001431991
192 38 Short.Range.Days..14 -0.016442151
193 40 Short.Range.Days..14 -0.028879887
194 42 Short.Range.Days..14 -0.008744675
195 44 Short.Range.Days..14 0.003396965
196 46 Short.Range.Days..14 0.006496634
197 48 Short.Range.Days..14 0.034291641
198 50 Short.Range.Days..14 0.037316392
199 52 Short.Range.Days..14 0.025819292
200 54 Short.Range.Days..14 0.017700215
201 56 Short.Range.Days..14 0.030761449
202 58 Short.Range.Days..14 0.042412907
203 60 Short.Range.Days..14 0.064320329
204 4 Short.Range.Days..16 NA
205 6 Short.Range.Days..16 NA
206 8 Short.Range.Days..16 NA
207 10 Short.Range.Days..16 NA
208 12 Short.Range.Days..16 NA
209 14 Short.Range.Days..16 NA
210 16 Short.Range.Days..16 NA
211 18 Short.Range.Days..16 -0.24576188
212 20 Short.Range.Days..16 -0.124836183
213 22 Short.Range.Days..16 -0.048221263
214 24 Short.Range.Days..16 -0.035029068
215 26 Short.Range.Days..16 -0.017987078
216 28 Short.Range.Days..16 -0.008633172
217 30 Short.Range.Days..16 -0.031737817
218 32 Short.Range.Days..16 -0.0329801
219 34 Short.Range.Days..16 -0.022857234
220 36 Short.Range.Days..16 -0.033276605
221 38 Short.Range.Days..16 -0.041135562
222 40 Short.Range.Days..16 -0.040310448
223 42 Short.Range.Days..16 -0.039212637
224 44 Short.Range.Days..16 -0.022545529
225 46 Short.Range.Days..16 -0.003491653
226 48 Short.Range.Days..16 0.019354126
227 50 Short.Range.Days..16 0.01404553
228 52 Short.Range.Days..16 0.009496747
229 54 Short.Range.Days..16 0.021609426
230 56 Short.Range.Days..16 0.053664294
231 58 Short.Range.Days..16 0.034393419
232 60 Short.Range.Days..16 0.051344379
233 4 Short.Range.Days..18 NA
234 6 Short.Range.Days..18 NA
235 8 Short.Range.Days..18 NA
236 10 Short.Range.Days..18 NA
237 12 Short.Range.Days..18 NA
238 14 Short.Range.Days..18 NA
239 16 Short.Range.Days..18 NA
240 18 Short.Range.Days..18 NA
241 20 Short.Range.Days..18 -0.201415281
242 22 Short.Range.Days..18 -0.094650643
243 24 Short.Range.Days..18 -0.050407965
244 26 Short.Range.Days..18 -0.011944599
245 28 Short.Range.Days..18 0.006048385
246 30 Short.Range.Days..18 -0.009465899
247 32 Short.Range.Days..18 -0.010465794
248 34 Short.Range.Days..18 -0.017793544
249 36 Short.Range.Days..18 -0.043409233
250 38 Short.Range.Days..18 -0.047284525
251 40 Short.Range.Days..18 -0.034924265
252 42 Short.Range.Days..18 -0.035220327
253 44 Short.Range.Days..18 -0.038604807
254 46 Short.Range.Days..18 -0.017079637
255 48 Short.Range.Days..18 0.016028302
256 50 Short.Range.Days..18 0.012447745
257 52 Short.Range.Days..18 0.030016509
258 54 Short.Range.Days..18 0.047367639
259 56 Short.Range.Days..18 0.050529707
260 58 Short.Range.Days..18 0.043451669
261 60 Short.Range.Days..18 0.057382559
262 4 Short.Range.Days..20 NA
263 6 Short.Range.Days..20 NA
264 8 Short.Range.Days..20 NA
265 10 Short.Range.Days..20 NA
266 12 Short.Range.Days..20 NA
267 14 Short.Range.Days..20 NA
268 16 Short.Range.Days..20 NA
269 18 Short.Range.Days..20 NA
270 20 Short.Range.Days..20 NA
271 22 Short.Range.Days..20 -0.150659349
272 24 Short.Range.Days..20 -0.087423089
273 26 Short.Range.Days..20 -0.038100588
274 28 Short.Range.Days..20 -0.046059396
275 30 Short.Range.Days..20 -0.049492703
276 32 Short.Range.Days..20 -0.025327689
277 34 Short.Range.Days..20 -0.027303766
278 36 Short.Range.Days..20 -0.029267308
279 38 Short.Range.Days..20 -0.030914711
280 40 Short.Range.Days..20 -0.020236697
281 42 Short.Range.Days..20 -0.020736933
282 44 Short.Range.Days..20 -0.021439136
283 46 Short.Range.Days..20 -0.010624047
284 48 Short.Range.Days..20 0.016708851
285 50 Short.Range.Days..20 0.031313822
286 52 Short.Range.Days..20 0.041814604
287 54 Short.Range.Days..20 0.041267541
288 56 Short.Range.Days..20 0.057323017
289 58 Short.Range.Days..20 0.041221109
290 60 Short.Range.Days..20 0.05872252
291 4 Short.Range.Days..22 NA
292 6 Short.Range.Days..22 NA
293 8 Short.Range.Days..22 NA
294 10 Short.Range.Days..22 NA
295 12 Short.Range.Days..22 NA
296 14 Short.Range.Days..22 NA
297 16 Short.Range.Days..22 NA
298 18 Short.Range.Days..22 NA
299 20 Short.Range.Days..22 NA
300 22 Short.Range.Days..22 NA
301 24 Short.Range.Days..22 -0.15090012
302 26 Short.Range.Days..22 -0.104523303
303 28 Short.Range.Days..22 -0.092845968
304 30 Short.Range.Days..22 -0.083648125
305 32 Short.Range.Days..22 -0.046778288
306 34 Short.Range.Days..22 -0.058309377
307 36 Short.Range.Days..22 -0.045664863
308 38 Short.Range.Days..22 -0.015971201
309 40 Short.Range.Days..22 -0.0296146
310 42 Short.Range.Days..22 -0.013281189
311 44 Short.Range.Days..22 -0.014848272
312 46 Short.Range.Days..22 -0.011940442
313 48 Short.Range.Days..22 0.021530103
314 50 Short.Range.Days..22 0.031175715
315 52 Short.Range.Days..22 0.024433409
316 54 Short.Range.Days..22 0.033544534
317 56 Short.Range.Days..22 0.022443897
318 58 Short.Range.Days..22 0.025883639
319 60 Short.Range.Days..22 0.038383722
320 4 Short.Range.Days..24 NA
321 6 Short.Range.Days..24 NA
322 8 Short.Range.Days..24 NA
323 10 Short.Range.Days..24 NA
324 12 Short.Range.Days..24 NA
325 14 Short.Range.Days..24 NA
326 16 Short.Range.Days..24 NA
327 18 Short.Range.Days..24 NA
328 20 Short.Range.Days..24 NA
329 22 Short.Range.Days..24 NA
330 24 Short.Range.Days..24 NA
331 26 Short.Range.Days..24 -0.219027869
332 28 Short.Range.Days..24 -0.161214748
333 30 Short.Range.Days..24 -0.13408164
334 32 Short.Range.Days..24 -0.08070956
335 34 Short.Range.Days..24 -0.082899097
336 36 Short.Range.Days..24 -0.062595752
337 38 Short.Range.Days..24 -0.024198995
338 40 Short.Range.Days..24 -0.004691925
339 42 Short.Range.Days..24 -0.014496501
340 44 Short.Range.Days..24 -0.022884719
341 46 Short.Range.Days..24 -0.014154586
342 48 Short.Range.Days..24 0.000281776
343 50 Short.Range.Days..24 0.0071921
344 52 Short.Range.Days..24 -0.001297935
345 54 Short.Range.Days..24 -0.0015083
346 56 Short.Range.Days..24 -0.004905885
347 58 Short.Range.Days..24 0.001062168
348 60 Short.Range.Days..24 0.016119001
349 4 Short.Range.Days..26 NA
350 6 Short.Range.Days..26 NA
351 8 Short.Range.Days..26 NA
352 10 Short.Range.Days..26 NA
353 12 Short.Range.Days..26 NA
354 14 Short.Range.Days..26 NA
355 16 Short.Range.Days..26 NA
356 18 Short.Range.Days..26 NA
357 20 Short.Range.Days..26 NA
358 22 Short.Range.Days..26 NA
359 24 Short.Range.Days..26 NA
360 26 Short.Range.Days..26 NA
361 28 Short.Range.Days..26 -0.243817468
362 30 Short.Range.Days..26 -0.175056647
363 32 Short.Range.Days..26 -0.118290191
364 34 Short.Range.Days..26 -0.077769693
365 36 Short.Range.Days..26 -0.026417708
366 38 Short.Range.Days..26 -0.016489546
367 40 Short.Range.Days..26 -0.012463804
368 42 Short.Range.Days..26 -0.008863066
369 44 Short.Range.Days..26 -0.017249374
370 46 Short.Range.Days..26 -0.016538643
371 48 Short.Range.Days..26 -0.004546857
372 50 Short.Range.Days..26 -0.003654304
373 52 Short.Range.Days..26 -0.002765445
374 54 Short.Range.Days..26 -0.003328998
375 56 Short.Range.Days..26 -0.00821013
376 58 Short.Range.Days..26 0.002902259
377 60 Short.Range.Days..26 0.005409932
378 4 Short.Range.Days..28 NA
379 6 Short.Range.Days..28 NA
380 8 Short.Range.Days..28 NA
381 10 Short.Range.Days..28 NA
382 12 Short.Range.Days..28 NA
383 14 Short.Range.Days..28 NA
384 16 Short.Range.Days..28 NA
385 18 Short.Range.Days..28 NA
386 20 Short.Range.Days..28 NA
387 22 Short.Range.Days..28 NA
388 24 Short.Range.Days..28 NA
389 26 Short.Range.Days..28 NA
390 28 Short.Range.Days..28 NA
391 30 Short.Range.Days..28 -0.2017481
392 32 Short.Range.Days..28 -0.134879691
393 34 Short.Range.Days..28 -0.062318376
394 36 Short.Range.Days..28 -0.034419214
395 38 Short.Range.Days..28 -0.017322394
396 40 Short.Range.Days..28 -0.029575546
397 42 Short.Range.Days..28 -0.023687556
398 44 Short.Range.Days..28 -0.012397918
399 46 Short.Range.Days..28 -0.009062897
400 48 Short.Range.Days..28 -0.011838491
401 50 Short.Range.Days..28 -0.012319173
402 52 Short.Range.Days..28 -0.00739976
403 54 Short.Range.Days..28 -0.009963764
404 56 Short.Range.Days..28 -0.013427471
405 58 Short.Range.Days..28 -0.016496869
406 60 Short.Range.Days..28 -0.007558199
407 4 Short.Range.Days..30 NA
408 6 Short.Range.Days..30 NA
409 8 Short.Range.Days..30 NA
410 10 Short.Range.Days..30 NA
411 12 Short.Range.Days..30 NA
412 14 Short.Range.Days..30 NA
413 16 Short.Range.Days..30 NA
414 18 Short.Range.Days..30 NA
415 20 Short.Range.Days..30 NA
416 22 Short.Range.Days..30 NA
417 24 Short.Range.Days..30 NA
418 26 Short.Range.Days..30 NA
419 28 Short.Range.Days..30 NA
420 30 Short.Range.Days..30 NA
421 32 Short.Range.Days..30 -0.181026029
422 34 Short.Range.Days..30 -0.089303464
423 36 Short.Range.Days..30 -0.04590373
424 38 Short.Range.Days..30 -0.048539444
425 40 Short.Range.Days..30 -0.053611014
426 42 Short.Range.Days..30 -0.029848611
427 44 Short.Range.Days..30 -0.038913148
428 46 Short.Range.Days..30 -0.035174622
429 48 Short.Range.Days..30 -0.025815231
430 50 Short.Range.Days..30 -0.025238126
431 52 Short.Range.Days..30 -0.019484408
432 54 Short.Range.Days..30 -0.026327212
433 56 Short.Range.Days..30 -0.027493418
434 58 Short.Range.Days..30 -0.036467761
435 60 Short.Range.Days..30 0.003688413
The size of the tiles is based on the smallest distance between the data point. You want smaller tiles? Then provide data with a fine resolution.
Have a look at scale_gradientn, scale_brewer or scale_hue
Missing values are transparent by default (http://had.co.nz/ggplot2/geom_tile.html)