I'm implementing a key-value store in memory used as a real-time service. It needs to be fast and low latency. Because the number of elements is not known in advance, the table should grow gradually. I prefer open-address hash tables since they are significantly faster than chaining ones. However, open-address hash tables typically require occasional very slow rehashs, during which the service is unavailable. This is not acceptable. On the other hand, extensible hash tables are typically based on chaining, and are slower than open address ones.
Are there any hash tables that are as fast as open address ones (like google's dense_hash_map) and do not have large rehash overhead?
One simple way is to use an array of k small hash tables, so the rehash overhead can be reduced to 1/k. However, this doesn't make sense in my case, because I need to reduce the total unavailable time rather than the max unavailable time. If k small hash tables are used, although the max unavailable time is reduced to 1/k, the rehashs occur k times more often.
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I'm working on large scale component that generates unique/opaque tokens representing business entities. Over time there will be many billions of these records, but for the first year we're not expecting growth to exceed more than 2 billion individual items (probably less than 500 million).
The system itself is horizontally scaled but needs token generation to be idempotent; data integrity is maintained by using a contained but reasonably complex combination of transactional writes with embedded condition expressions AND standalone condition check write items.
The tokens themselves are UUIDs, and 'being efficient' are persisted as Binary attribute values (16 bytes) rather than the string representation (36 bytes), however the downside is that the data doesn't visualise nicely in query consoles making support hard if we encounter any bugs and/or broken data. Note there is no extra code complexity since we implement attributevalue.Marshaler interface to bind UUID (language) types to DynamoDB Binary attributes, and similarly do the same for any composite attributes.
My question relates to (mostly) data size/saving. Since the tokens are the partition keys, and some mapping columns are [token] -> [other token composite attributes], for example two UUIDs concatenated together into 32 bytes.
I wanted to keep really tight control over storage costs knowing that, over time, we will be spending ~$0.25/GB per month for this. My question is really three parts:
Are the PK/SK index size 'reserved' (i.e. padded) so it would make no difference at all to storage cost if we compress the overall field sizes down to the minimum possible size? (... I read somewhere that 100 bytes is typically reserved.
If they ARE padded, the cost savings for the data would be reasonably high, because each (tree) index node will be nearly as big as the data being mapped. (I assume a tree index is used once hashed PK has routed the query to the right server node/disk etc.)
Is there any observable query time performance benefit to compacting 36 bytes into 16 (beyond saving a few bytes across the network)? i.e. if Dynamo has to read fewer pages it'll work faster, but in practice are we talking microseconds at best?
This is a secondary concern, but is worth considering if there is a lot of concurrent access to the data. UUIDs will distribute partitions but inevitably sometimes we will have some more active partitions than others.
Are there any tools that can parse bytes back into human-readable UUIDs (or that we customise to inject behaviour to do this)?
This is concern, because making things small and efficient is ok, but supporting and resolving data issues will be difficult without significant tooling investment, and (unsurprisingly) the DynamoDB console, DynamoDB IntelliJ plugin and AWS NoSQL Workbench all garble the binary into unreadable characters.
No, the PK/SK types are not padded. There's 100 bytes of overhead per item stored.
Sending less data certainly won't hurt your performance. Don't expect a noticeable improvement though. If shorter values can keep your items at 1,024 bytes instead of 1,025 bytes then you save yourself a Write Unit during the save.
For the "garbled" binary values I assume you're looking at the base64 encoded values, which is a standard binary encoding standard which can be reversed by lots of tooling (now that you know the name of it).
Newbie to DDB here. I've been using a DDB table for a year now. Recently, I made improvements by compressing the payload using gzip (and representing it as a binary in DDB) and storing the new data in another newly created beta table. Overall compression was 3x. I expected the read latency(GetItem) to improve as well as it's less data to be transported over the wire. However, I'm seeing that the read latency has increased from ~ 50ms p99.9 to ~114 ms p99.9. I'm not sure how that happened and was wondering if because of the compression, now I have a lot of rows per partition (which I think is defined as <= 10 GB). I now have 3-4x more rows per partition. So, I'm wondering that once dynamoDb determines the right partition for a partition key, then within the partition how does it find the correct item? Gut feel is that this shouldn't lead to an increase in latency as a simplified representation of the partition can be a giant hashmap so it'd just be a simple lookup. I'd appreciate any help here.
My DDB schema:
partition-key - user-id,dataset-name
range-key - update-timestamp
payload - used to be string, now is compressed/binary.
In my GetItem requests, I specify both partition key and range key.
According to your description, your change included two unrelated parts: You compressed the payload, and increased the number of items per partition. The first change - the compression - probably has little effect on the p99 latency (it could have a more noticable effect on the mean latency - which, according to Little's Law is related to throughput, if your client has fixed concurrency - but I'd expect it to lower, not increase).
Some guesses as to what might have increased the p99 latency:
More items per partition means that DynamoDB (which uses a B-tree) needs to do more disk reads to find a specific item. Since each disk access has rare delays caused by queueing, this adds to the tail latency.
You said that the change caused each partition to hold more items, I guess this means you now have fewer partitions. If you have too few of them, you can start getting unbalanced load on the different DynamoDB partitions, and more contention and latency for specific "hot" partitions.
I don't know how you measure your latency. Your client now needs (I guess) to uncompress the returned result, maybe it is now busier, adding queening delays in the client? Can you lower your client's concurrency (how many client threads run in parallel) and see if the high tail latency is an artifact of the server design, or the client's design?
I'm confused about the advantage of embedded key-value databases over the naive solution of just storing one file on disk per key. For example, databases like RocksDB, Badger, SQLite use fancy data structures like B+ trees and LSMs but seem to get roughly the same performance as this simple solution.
For example, Badger (which is the fastest Go embedded db) takes about 800 microseconds to write an entry. In comparison, creating a new file from scratch and writing some data to it takes 150 mics with no optimization.
EDIT: to clarify, here's the simple implementation of a key-value store I'm comparing with the state of the art embedded dbs. Just hash each key to a string filename, and store the associated value as a byte array at that filename. Reads and writes are ~150 mics each, which is faster than Badger for single operations and comparable for batched operations. Furthermore, the disk space is minimal, since we don't store any extra structure besides the actual values.
I must be missing something here, because the solutions people actually use are super fancy and optimized using things like bloom filters and B+ trees.
But Badger is not about writing "an" entry:
My writes are really slow. Why?
Are you creating a new transaction for every single key update? This will lead to very low throughput.
To get best write performance, batch up multiple writes inside a transaction using single DB.Update() call.
You could also have multiple such DB.Update() calls being made concurrently from multiple goroutines.
That leads to issue 396:
I was looking for fast storage in Go and so my first try was BoltDB. I need a lot of single-write transactions. Bolt was able to do about 240 rq/s.
I just tested Badger and I got a crazy 10k rq/s. I am just baffled
That is because:
LSM tree has an advantage compared to B+ tree when it comes to writes.
Also, values are stored separately in value log files so writes are much faster.
You can read more about the design here.
One of the main point (hard to replicate with simple read/write of files) is:
Key-Value separation
The major performance cost of LSM-trees is the compaction process. During compactions, multiple files are read into memory, sorted, and written back. Sorting is essential for efficient retrieval, for both key lookups and range iterations. With sorting, the key lookups would only require accessing at most one file per level (excluding level zero, where we’d need to check all the files). Iterations would result in sequential access to multiple files.
Each file is of fixed size, to enhance caching. Values tend to be larger than keys. When you store values along with the keys, the amount of data that needs to be compacted grows significantly.
In Badger, only a pointer to the value in the value log is stored alongside the key. Badger employs delta encoding for keys to reduce the effective size even further. Assuming 16 bytes per key and 16 bytes per value pointer, a single 64MB file can store two million key-value pairs.
Your question assumes that the only operation needed are single random reads and writes. Those are the worst case scenarios for log-structured merge (LSM) approaches like Badger or RocksDB. The range query, where all keys or key-value pairs in a range gets returned, leverages sequential reads (due to the adjacencies of sorted kv within files) to read data at very high speeds. For Badger, you mostly get that benefit if doing key-only or small value range queries since they are stored in a LSM while large values are appended in a not-necessarily sorted log file. For RocksDB, you’ll get fast kv pair range queries.
The previous answer somewhat addresses the advantage on writes - the use of buffering. If you write many kv pairs, rather than storing each in separate files, LSM approaches hold these in memory and eventually flush them in a file write. There’s no free lunch so asynchronous compaction must be done to remove overwritten data and prevent checking too many files for queries.
Previously answered here. Mostly similar to other answers provided here but makes one important, additional point: files in a filesystem can't occupy the same block on disk. If your records are, on average, significantly smaller than typical disk block size (4-16 KiB), storing them as separate files will incur substantial storage overhead.
There's an SQLite database being used to store static-sized data in a round-robin fashion.
For example, 100 days of data are stored. On day 101, day 1 is deleted and then day 101 is inserted.
The number of rows is the same between days. The the individual fields in the rows are all integers (32-bit or less) and timestamps.
The database is stored on an SD card with poor I/O speed,
something like a read speed of 30 MB/s.
VACUUM is not allowed because it can introduce a wait of several seconds
and the writers to that database can't be allowed to wait for write access.
So the concern is fragmentation, because I'm inserting and deleting records constantly
without VACUUMing.
But since I'm deleting/inserting the same set of rows each day,
will the data get fragmented?
Is SQLite fitting day 101's data in day 1's freed pages?
And although the set of rows is the same,
the integers may be 1 byte day and then 4 bytes another.
The database also has several indexes, and I'm unsure where they're stored
and if they interfere with the perfect pattern of freeing pages and then re-using them.
(SQLite is the only technology that can be used. Can't switch to a TSDB/RRDtool, etc.)
SQLite will reuse free pages, so you will get fragmentation (if you delete so much data that entire pages become free).
However, SD cards are likely to have a flash translation layer, which introduces fragmentation whenever you write to some random sector.
Whether the first kind of fragmentation is noticeable depends on the hardware, and on the software's access pattern.
It is not possible to make useful predictions about that; you have to measure it.
In theory, WAL mode is append-only, and thus easier on the flash device.
However, checkpoints would be nearly as bad as VACUUMs.
First, here's a support document for DyanamoDB giving guidance on how to avoid a "hot" hash key.
Conceptually, a hot hash key is simple and they are (typically) straightforward to avoid - the documents give good examples of how to do so. I am not asking what a hot hash key is.
What I do want to know is how much would throughout performance actually degrade for a given level of provisioned read/write units at the limit, that is, when all read/write activity is focused on only one (or very few) partition(s). For properly distributed hash key activity (uniform across partitions), DynamoDB gives single millisecond response times. So, what would response times look like in the worst case scenario?
Here's a post on AWS asking a related question which gives a specific use-case where knowledge of this answer matters.
DynamoDB will also guarantee you single millisecond response times, even for your 'hot' hash key, BUT you will very likely see a lot throttled requests. And that even when you seem to have plenty of unspent provisioned throuput. That is because your provisioned throuput gets effectively divided by the number of partitions. But as you don't know how many partitions there are at a given time, it varies how much of your provisioned throuput you can spent for a single hashkey...