I'm on Ubuntu 12.04.5 and have R v.3.1.3 installed.
I'm using the command
install.packages("ggvis")
And that yields
ERROR: dependency ‘mime’ is not available for package ‘shiny’
* removing ‘/home/milia/R/x86_64-pc-linux-gnu-library/3.1/shiny’
ERROR: dependency ‘shiny’ is not available for package ‘ggvis’
* removing ‘/home/milia/R/x86_64-pc-linux-gnu-library/3.1/ggvis’
The downloaded source packages are in
‘/tmp/Rtmp6Cz9En/downloaded_packages’
Warning messages:
1: In install.packages("ggvis") :
installation of package ‘shiny’ had non-zero exit status
2: In install.packages("ggvis") :
installation of package ‘ggvis’ had non-zero exit status
So I figured I had to install shiny first. So I typed
install.packages("shiny")
Which gave:
ERROR: dependency ‘mime’ is not available for package ‘shiny’
* removing ‘/home/milia/R/x86_64-pc-linux-gnu-library/3.1/shiny’
The downloaded source packages are in
‘/tmp/Rtmp6Cz9En/downloaded_packages’
Warning message:
In install.packages("shiny") :
installation of package ‘shiny’ had non-zero exit status
So I thought installing mime.
Did as usual
install.packages("mime")
Which gave
Warning message:
In install.packages("mime") :
installation of package ‘mime’ had non-zero exit status
I'm not sure what to do next, and the similar problems in stack with a non-zero exit status didn't help much.
My Rprofile can be found here.
Related
I've been trying to run an LGCP in 'inlabru' that was taking forever so I've been set up with a Unix account to access an RStudio server. The trouble is now I am getting non-zero exit status installation errors for a few packages. Specifically 'rgdal' and 'inlabru'. I have tried (for 'rgdal') installing the dependencies and PROJ/GDAL without any success. The end of the error is:
configure: error: gdal-config not found or not executable.
ERROR: configuration failed for package ‘rgdal’
* removing ‘/home/staff4/ebryce/R/x86_64-pc-linux-gnu-library/4.1/rgdal’
Warning in install.packages :
installation of package ‘rgdal’ had non-zero exit status
ERROR: dependency ‘systemfonts’ is not available for package ‘svglite’
* removing ‘/home/staff4/ebryce/R/x86_64-pc-linux-gnu-library/4.1/svglite’
Warning in install.packages :
installation of package ‘svglite’ had non-zero exit status
ERROR: dependency ‘terra’ is not available for package ‘raster’
* removing ‘/home/staff4/ebryce/R/x86_64-pc-linux-gnu-library/4.1/raster’
Warning in install.packages :
installation of package ‘raster’ had non-zero exit status
ERROR: dependencies ‘s2’, ‘units’ are not available for package ‘sf’
* removing ‘/home/staff4/ebryce/R/x86_64-pc-linux-gnu-library/4.1/sf’
Warning in install.packages :
installation of package ‘sf’ had non-zero exit status
ERROR: dependency ‘raster’ is not available for package ‘leaflet’
* removing ‘/home/staff4/ebryce/R/x86_64-pc-linux-gnu-library/4.1/leaflet’
Warning in install.packages :
installation of package ‘leaflet’ had non-zero exit status
ERROR: dependencies ‘sf’, ‘svglite’ are not available for package ‘leafpop’
* removing ‘/home/staff4/ebryce/R/x86_64-pc-linux-gnu-library/4.1/leafpop’
Warning in install.packages :
installation of package ‘leafpop’ had non-zero exit status
ERROR: dependencies ‘raster’, ‘terra’ are not available for package ‘satellite’
* removing ‘/home/staff4/ebryce/R/x86_64-pc-linux-gnu-library/4.1/satellite’
Warning in install.packages :
installation of package ‘satellite’ had non-zero exit status
ERROR: dependencies ‘leaflet’, ‘raster’, ‘sf’ are not available for package ‘leafem’
* removing ‘/home/staff4/ebryce/R/x86_64-pc-linux-gnu-library/4.1/leafem’
Warning in install.packages :
installation of package ‘leafem’ had non-zero exit status
ERROR: dependencies ‘leafem’, ‘leaflet’, ‘leafpop’, ‘raster’, ‘satellite’, ‘sf’ are not available for package ‘mapview’
* removing ‘/home/staff4/ebryce/R/x86_64-pc-linux-gnu-library/4.1/mapview’
Warning in install.packages :
installation of package ‘mapview’ had non-zero exit status
The downloaded source packages are in
‘/tmp/Rtmp57pHoc/downloaded_packages’
I am thinking it is the library that is failing the installation because it's a server, but I've tried changing .libPaths() to a folder on my drive with no success. I have also tried running
install.packages("rgdal", type="source", repos="http://R-Forge.R-project.org", configure.args=c('--with-gdal-config=/opt/local/bin/gdal-config'))
and get
configure: error: gdal-config not found - configure argument error.
ERROR: configuration failed for package ‘rgdal’
* removing ‘/home/staff4/ebryce/R/x86_64-pc-linux-gnu-library/4.1/rgdal’
Warning in install.packages :
installation of package ‘rgdal’ had non-zero exit status
The downloaded source packages are in
‘/tmp/Rtmp57pHoc/downloaded_packages’
Any help is greatly appreciated!
gdal (and friends) are not installed
sudo add-apt-repository ppa:ubuntugis/ubuntugis-unstable
sudo apt-get update
sudo apt-get install libudunits2-dev libgdal-dev libgeos-dev libproj-dev
I am trying to install R Shiny on Azure , Linux (centos 8.2.2004). Using the manual : https://linuxize.com/post/how-to-install-r-on-centos-7/
However I can not install packages. I receive error :
"ERROR: failed to lock directory ‘/usr/lib64/R/library’ for modifying Try removing ‘/usr/lib64/R/library/00LOCK-Rcpp’ ERROR: dependency ‘Rcpp’ is not available for package ‘later’
* removing ‘/usr/lib64/R/library/later’ ERROR: dependencies ‘Rcpp’, ‘later’ are not available for package ‘promises’
* removing ‘/usr/lib64/R/library/promises’ ERROR: dependencies ‘Rcpp’, ‘promises’, ‘later’ are not available for package ‘httpuv’
* removing ‘/usr/lib64/R/library/httpuv’ ERROR: dependencies ‘httpuv’, ‘later’, ‘promises’ are not available for package ‘shiny’
* removing ‘/usr/lib64/R/library/shiny’
The downloaded source packages are in
‘/tmp/RtmpGIfMqF/downloaded_packages’ Updating HTML index of packages in '.Library' Making 'packages.html' ... done Warning messages: 1: In install.packages("shiny") : installation of package ‘Rcpp’ had non-zero exit status 2: In install.packages("shiny") : installation of package ‘later’ had non-zero exit status 3: In install.packages("shiny") : installation of package ‘promises’ had non-zero exit status 4: In install.packages("shiny") : installation of package ‘httpuv’ had non-zero exit status 5: In install.packages("shiny") : installation of package ‘shiny’ had non-zero exit status"
I have tried to fix the issue however , was able. If you have some ideas, please advice, thanks.
I solved the problem finally. There was necessary to delete the folder :
sudo rm -rf /usr/lib64/R/library/00LOCK-Rcpp
Then tried instal shiny package again and worked fine.
I'm trying to install ggplot2 on my campus' Rstudio server. Unfortunately I receive the classic "installation of package 'ggplot2' had non-zero exit status." I've looked through the many threads of users who've had the same problem with other packages, but haven't found any workable solutions.
I've tried using install.packages("ggplot2", dependencies = TRUE), which hasn't worked.
Also, I'm running the most recent version of OSX on a MacBook Pro.
This is the error message I receive:
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/mnt/trafficstop/jrleary/R/x86_64-redhat-linux-gnu-library/3.5/vctrs’
Warning in install.packages :
installation of package ‘vctrs’ had non-zero exit status
ERROR: dependency ‘vctrs’ is not available for package ‘pillar’
* removing ‘/mnt/trafficstop/jrleary/R/x86_64-redhat-linux-gnu-library/3.5/pillar’
Warning in install.packages :
installation of package ‘pillar’ had non-zero exit status
ERROR: dependency ‘pillar’ is not available for package ‘tibble’
* removing ‘/mnt/trafficstop/jrleary/R/x86_64-redhat-linux-gnu-library/3.5/tibble’
Warning in install.packages :
installation of package ‘tibble’ had non-zero exit status
ERROR: dependency ‘tibble’ is not available for package ‘ggplot2’
* removing ‘/mnt/trafficstop/jrleary/R/x86_64-redhat-linux-gnu-library/3.5/ggplot2’
Warning in install.packages :
installation of package ‘ggplot2’ had non-zero exit status
I had used this to try to install the car package:
install.packages("car", dependencies=TRUE, INSTALL_opts = c('--no-lock'))
but received this error:
ERROR: dependency ‘openxlsx’ is not available for package ‘rio’
* removing ‘/home/dan-laptop/R/x86_64-pc-linux-gnu-library/3.2/rio’
Warning in install.packages :
installation of package ‘rio’ had non-zero exit status
ERROR: dependency ‘rio’ is not available for package ‘car’
* removing ‘/home/dan-laptop/R/x86_64-pc-linux-gnu-library/3.2/car’
Warning in install.packages :
installation of package ‘car’ had non-zero exit status
ERROR: dependency ‘car’ is not available for package ‘alr4’
* removing ‘/home/dan-laptop/R/x86_64-pc-linux-gnu-library/3.2/alr4’
Warning in install.packages :
installation of package ‘alr4’ had non-zero exit status
I tried installing the dependencies individually with no luck. Any help would be greatly appreciated. Thanks.
When i try to install Rfacebook for R version-3.1.3 in ubuntu i get the following error.
--------------------------------------------------------------------
ERROR: configuration failed for package ‘curl’
* removing ‘/home/gadheyan/R/x86_64-unknown-linux-gnu-library/3.1/curl’
Warning in install.packages :
installation of package ‘curl’ had non-zero exit status
ERROR: dependency ‘curl’ is not available for package ‘httr’
* removing ‘/home/gadheyan/R/x86_64-unknown-linux-gnu-library/3.1/httr’
Warning in install.packages :
installation of package ‘httr’ had non-zero exit status
ERROR: dependency ‘httr’ is not available for package ‘Rfacebook’
* removing ‘/home/gadheyan/R/x86_64-unknown-linux-gnu-library/3.1/Rfacebook’
Warning in install.packages :
installation of package ‘Rfacebook’ had non-zero exit status
The source packages i've downloaded are located in
‘/tmp/RtmpvPtGxz/downloaded_packages’
It says that curl and httr packages are not available. So how can i install it so as to use Rfacebook.