When I installed and opened R studio (0.98.1091) in my Macbook ( OS X 10.9.5), it shows an error message as follows. I have R (3.1.2) in my application, which seems work fine.
I also tried R (3.0.3) which works fine, just in case the higher version of R (3.1.2) conflicts with R studio with some reason. But, each time, R-studio kept giving me the same error message after installed.
ERROR r error 4 (R code execution error)
[errormsg=Error in identical(call[[iL]],quote(
doTryCatch)) :
7 arguments passed to .Internal(identical) which
requires 5
, code=local(source("/Volumes/
Rstudio-0.98.1091
1/Rstudio.app/Contents/
Resources/R/ToolsR",local=TRUE, echo=FALSE, verbose=FALSE,
keep.source=FALSE, encoding='UTF-8'))}; OCCURRED
AT:core::Error r::exec::<anaonymous
namespace>::evaluateExpressionsUnsafe(SEXP,SEXP,SEXP*,sexp::Protect *) /Users
/rstudio/rstudio/src/cpp/r/RExce.cpp:148
It would be much appreciated if anyone could suggest a solution for this.
Related
Suddenly R is not working properly anymore. Everything that requires some sort of visualization causes R to run infinitely and ultimately to crash. Even the simplest code such as: hist(rnorm(50)) does not provide anything. After a while I get a message: "Terminate R, R is not responding to your request to interrupt processing so to stop the current operation you may need to terminate R entirely".
I use a M1 macbook, installed the most recent version of R (v4.2.1. Apple silicon arm64 build for M1 Macs) and RStudio Desktop (2022.07.1+554). All packages are uptodate. I tried restarting R, reinstalling R and dev.off(). All the other functions work fine.
Does anyone know what to do?
I found a solution to my problem. Apparently R was trying to search for a font to use to display images. When I restarted my computer R gave the error message: "In doTryCatch(return(expr), name, parentenv, handler) :
no font could be found for family "Arial" "
A resolution for this problem is provided elsewhere:
RStudio cannot find fonts to be used in plotting
I’m trying to run some modeling (random forest, using caret) in rstudio server 1.1.423 (with R version 3.4.4, running on an Ubuntu 16.04 server), and it comes back with the following error:
Error: protect(): protection stack overflow
This error doesn't come up if I run the same analysis in an interactive R session. I seem to recall that in the past (in rstudio server running an older version of R) was able to resolve this error by issuing memory.limit(500000) in an interactive rstudio server session, but these days this comes back with:
> memory.limit(500000)
[1] Inf
Warning message:
'memory.limit()' is Windows-specific
A solution that works and that I use routinely is to run my analysis from a script, like Rscript --max-ppsize=500000 --vanilla /location/of/the/script.R, but that’s not what I want to do, as in this particular case I need to run the analysis interactively.
I’ve also tried adding R_MAX_VSIZE=500000 at the end of my ~/.profile, or rsession-memory-limit-mb=500000 into /etc/rstudio/rserver.conf, as well as putting options(expressions = 5e5) in my ~/.Rprofile, or running options(expressions = 5e5) in an interactive rstudio server session. No luck so far, the “protect()” error keeps on popping up.
Any ideas as to how to remove the memory limit in rstudio server?
Upon startup in RStudio. Before doing anything I get the following error display on the console window:
Error: STRING_ELT() can only be applied to a 'character vector', not a 'raw'
I'm working on a Windows 10 OS R version 3.2.2
How can I get rid of the message? How can I identify where the source of where this error is coming from? I'm thinking it may have something to do with a previous session but I'm having trouble identifying the pattern for why this error occurs.
In RStudio I went to Session - Clear Workspace
Then I went to Session - Terminate R
Then I went to Session - Restart R
Then I closed the program and restarted it. Some how that fixed the issue.
I had a similar error. In my case, the default Computer\HKEY_LOCAL_MACHINE\SOFTWARE\R-core\R64\Current Version regkey was pointing to some ancient 2015 version of a Microsoft Revolution Analytics version of R. Not sure how that happened, but I updated it to point to the latest version of R in C:\Program Files\R\R-4.1.2 and all was well.
YMMV
I've been trying to produce Kernel Density Estimates using the "kde" tool from
Geospatial Modeling Environment (GME, see documentation on kde). But I keep getting the following error regardless of valid input:
Code:
kde(in="C:\Users\Richard\Desktop\KDE_Scripting_Local\kde.gdb!BB_90sJAN",
out="C:\Users\Richard\Desktop\KDE_Scripting_Local\kde.gdb!KDE_BB90sJAN",
bandwidth="100000", cellsize=6000, kernel="QUARTIC",
ext="C:\Users\Richard\Desktop\KDE_Scripting_Local\kde.gdb!rect_extent");
Error message:
Error: The command text could not be interpreted. Please check the syntax of the command. Error: An important error has occurred. Please include the information below if you submit a query about this error.
Exception from HRESULT: 0x8004025A
The most frustrating part is that I had this exact code working last week. I tried restarting, reinstalling GME, copying the input to a new GDB as suggested here, subprocesses with PYTHON 2.7. Everything still produces this error with the same HRESULT.
I'm running GME Version 0.7.3.0, ArcGIS For Desktop 10.2.2, R Version 3.1.1, and Python 2.7 on Windows 7. There's not much community support for GME, so any help here would be much appreciated.
My R script worked fine in RStudio (Version 0.98.1091) on Windows 7. Then I restarted my laptop, entered again in RStudio and now it provides the following error messages each time I want to execute my code:
cl <- makeCluster(mc); # build the cluster
Error: could not find function "makeCluster"
> registerDoParallel(cl)
Error: could not find function "registerDoParallel"
> fileIdndexes <- gsub("\\.[^.]*","",basename(SF))
Error in basename(SF) : object 'SF' not found
These error messages are slightly different each time I run the code. It seems that RStudio cannot find any function that is used in the code.
I restarted R Session, cleaned Workspace, restarted RStudio. Nothing helps.
It must be noticed that after many attempts to execute the code, it finally was initialized. However, after 100 iterations, it crashed with the message related to unavailability of localhost.
Add library(*the package needed/where the function is*) for each of the packages you're using.