I have Java EE Eclipse Indigo installed and am trying to use Help->Install New Software to install the SpringSource Tool Suite from the update site http://dist.springsource.com/release/TOOLS/update/e3.7
I have java 1.7.0_45 installed in use by Eclipse.
When I click "Finish", the Installing Software progress indicator displays and it goes about 49% of the way to completion before getting
An error occurred while collecting items to be installed
session context was:(profile=epp.package.jee, phase=org.eclipse.equinox.internal.p2.engine.phases.Collect, operand=, action=).
Problems downloading artifact: osgi.bundle,org.grails.ide.eclipse.core,3.6.3.201411271013-RELEASE.
Error reading signed content:C:\Users\BARRET~1.REE\AppData\Local\Temp\signatureFile3011079682847967573.jar
An error occurred while processing the signatures for the file: C:\Users\BARRET~1.REE\AppData\Local\Temp\signatureFile3011079682847967573.jar
The last 3 lines are duplicated for around 20 different artifacts/jar files.
In my C:\Users directory, I have both a BARRETT~1~REE\AppData\Local\Temp directory and a barrett.reed\AppData\Local\Temp directory. It looks like the files are being downloaded to barrett.reed\AppData\Local\Temp. Perhaps that is the issue? Any way to resolve this?
Thanks in advance,
B.J. Reed
Related
Details
I am getting a build failure of my read-the-docs that I don't understand. The assertion of "verbatim" in line 2151 of nbsphinx.py is causing the build failure. So the build fails when I try to include the Jupyter Notebook tutorials I created. I compared current versions of the tutorials to previous versions which had not caused the build to fail, and I can't find a difference that could account for the current failure.
Read the Docs project URL: lofti_gaia
Build URL: https://github.com/logan-pearce/lofti_gaia
Read the Docs username: logan-pearce
Expected Result
A passing build including *.ipynb files
Actual Result
Build failed at line 2151 of nbsphinx.py due to assertion of 'Verbatim' failing.
Terminal output:
Running Sphinx v4.1.2
loading translations [en]... done
making output directory... done
WARNING: html_static_path entry '_static' does not exist
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
building [latex]: all documents
updating environment: 0 added, 0 changed, 0 removed
looking for now-outdated files... none found
processing lofti_gaia.tex... index installation tutorials/QuickStart tutorials/Tutorial api lofti loftitools
resolving references...
done
writing... failed
Exception occurred:
File "/home/docs/checkouts/readthedocs.org/user_builds/lofti-gaia/conda/latest/lib/python3.7/site-packages/nbsphinx.py", line 2151, in depart_codearea_latex
assert 'Verbatim' in lines[0]
AssertionError
The full traceback has been saved in /tmp/sphinx-err-x1h83s3m.log, if you want to report the issue to the developers.
Please also report this if it was a user error, so that a better error message can be provided next time.
A bug report can be filed in the tracker at <https://github.com/sphinx-doc/sphinx/issues>. Thanks!
According to the github issue 584 for nbsphinx (https://github.com/spatialaudio/nbsphinx/issues/584), this is due to a compatibility issue with sphinx 4.1.0. It can be gotten around by requiring sphinx version 4.0.2.
So in my requirements.txt file, I included sphinx==4.0.2, after which the build passes. So now my requirements.txt file looks like:
numpy
matplotlib
astropy>=4.0.1.post1
astroquery>=0.4
sphinx==4.0.2
ipython==7.19.0
nbsphinx>=0.8.6
and the build passes.
I have encountered the same issue. I did not solve it with .ipynb format, but converting the jupyter notebook to .rst format works.
May it helps
I am using Eclipse 2018-09 and StatET 3.6.1. I have two R environments: one for R 3.3.2, another for R 3.5.1. When I execute a command like ?lm to call up a help page in v3.3.2, the page appears in the StatET "R Help" pane, as I want it to. But when I execute the same command to call up a help page in v3.5.1, the console tells me "starting httpd help server," and the help page loads in my browser. How can I get help to load in the "R Help" pane when using v3.5.1?
The problem arises whether or not I run Eclipse as an administrator, and whether or not I "Auto Run" R 3.5.1 upon booting. And as far as I can tell, the configurations for the two versions of R are nearly identical:
Both are running Windows 10 and JRE 1.8.0_121.
Both with version 2.1 of the rj package.
For both, I've checked every box in "Run Configurations > R Console > R Console > Eclipse Integration," including "Enable R Help for StatET."
For both, options("help_type") == 'html'.
Inspection of the different log files that I get when using Auto Run with the two versions of R suggests that there is some sort of StatET config problem that has to do with Derby. These messages appear only when I boot R 3.5.1:
!ENTRY de.walware.statet.r.core 4 -1 2018-11-16 02:50:29.092
!MESSAGE An error occurred when initializing DB for model.
!STACK 1
org.eclipse.core.runtime.CoreException: An error occurred when loading embedded DB (Derby + DBCP)
DB ConnectionURL=[path redacted]\eclipse-workspace\.metadata\.plugins\de.walware.statet.r.core\db
[...]
Caused by: java.sql.SQLException: Another instance of Derby may have already booted the database C:\[path redacted]\eclipse-workspace\.metadata\.plugins\de.walware.statet.r.core\db.
[...]
Caused by: ERROR XSDB6: Another instance of Derby may have already booted the database C:\[path redacted]\eclipse-workspace\.metadata\.plugins\de.walware.statet.r.core\db.
But I don't know what to make of this problem or how to fix it.
Stephan Wahlbrink, the creator of StatET, recommended running this command at startup:
registerS3method("print", "help_files_with_topic", rj::print.help_files_with_topic)
I ran the command, and it solved the problem.
(Stephan added that the Derby errors that I saw in the logs were unrelated to the problem of displaying help in the "R Help" pane.)
I'm building a javaFX bundle for Mac and am adding an Uninstaller.app to the bundle.
As prt of the code is signed and I insert Uninstaller folder as a fileset into the (among other files).
But, when code is building I always get an error when trying to codesign "Application Stub" under Uninstaller.app->Contents->MacOS.
This is the message I get:
Running [codesign, -s, Developer ID Application: xxx, --prefix, test.com.xxx.yyy., -vvvv, /var/folders/02/6nmx541x4rq4f6mz3n9__px40000gn/T/fxbundler11458933583542045410/images/image-17325795275411389984/xxx-TEST.app/Contents/Java/Uninstaller.app/Contents/MacOS/Application Stub]
/var/folders/02/6nmx541x4rq4f6mz3n9__px40000gn/T/fxbundler11458933583542045410/images/image-17325795275411389984/xxx-TEST.app/Contents/Java/Uninstaller.app/Contents/MacOS/Application Stub: code object is not signed at all
In subcomponent: /private/var/folders/02/6nmx541x4rq4f6mz3n9__px40000gn/T/fxbundler11458933583542045410/images/image-17325795275411389984/xxx-TEST.app/Contents/Java/Uninstaller.app/Contents/document.wflow
Where document.wflow is an Automator file one folder above Application Stub file.
I'm loosing my hair in here and am trying to solve it for the last 2 weeks.
Any help is appreciated.
Thanks.
I have been trying to run all the examples and demos provided by R3 Corda on my local machine which has windows 10 in it.
https://docs.corda.net/releases/release-V1.0/running-the-demos.html
While example 1 and 2 are working fine, but I am unable to run the demos. While the nodes are getting deployed, but once I run the nodes using runnodes command from command-line, they open in terminals and immediately close. Please can someone from #r3corda #corda team may help to sort this out.
I was running into the similar issue on Win 10.
Running the following:
>java -jar corda.jar
Exception in thread "main" java.lang.UnsatisfiedLinkError: Could not load library. Reasons: [no jansi64-1.14 in java.library.path, no jansi-1.14 in java.library.path, no jansi in java.library.path,
C:\Users\<user>\AppData\Local\Temp\jansi-64-1-6925657630491746639.14: Access is denied]
Downloading the missing library to C:\windows reloved it.
Download Link:
http://www.java2s.com/Code/Jar/j/Downloadjansi14jar.htm
I am having problems opening RStudio, it worked fine before I got my mouse pad reconfigured. Here goes... When I open the program, it loads but appears blank. The menu tabs appear but do not populate when clicked. I've read a few answers to this one of which involved deleting the 'RStudio-Desktop' within the local files but did not solve the issue. I managed to run the RStudio diagnostic and below is the error message. OS is Windows 7.
I would be grateful if anyone can provide some insight regarding this.
Attempting to launch R session...
R_HOME=C:\PROGRA~1\R\R-33~1.1
PATH=C:\Program Files\R\R-3.3.1\bin\x64;C:\WINDOWS\Orant\product\11.2.0\client
_1\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\Syste>m
32\WindowsPowerShell\v1.0\;C:\Program Files (x86)\Intel\OpenCL SDK\3.0\bin\x86;C
:\Program Files (x86)\Intel\OpenCL SDK\3.0\bin\x64;C:\Program Files\Intel\WiFi\b
in\;C:\Program Files\Common Files\Intel\WirelessCommon\;C:\Program Files (x86)\M
icrosoft Application Virtualization Client;C:\Program Files (x86)\QuickTime\QTSy
stem\
R session launched, attempting to connect on port 44157...
Connected to R session, attempting to initialize...
13 Oct 2016 16:04:22 [rsession-B859XXXX] ERROR system error 5 (Access is denied)
[path=//mshsrmsapppXXXX/B859XXXX$]; OCCURRED AT: rstudio::core::Error rstudio::
core::FilePath::makeCurrentPath(bool) const C:\Users\Administrator\rstudio\src\c
pp\core\FilePath.cpp:978; LOGGED FROM: int main(int, char* const*) C:\Users\Admi
nistrator\rstudio\src\cpp\session\SessionMain.cpp:3202
QApplication::qAppName: Please instantiate the QApplication object first
C:\Program Files\RStudio>
Thanks,
Mits
Error 5 would suggest that the application is being written to those directories which does not have write privileges.
Make sure those folders have write privileges.
You can also try running RStudio application as Administrator.
To do so, Click on Start -> RStudio ( right click) -> Run as administrator.
I had similar problems installing R and RStudio on Windows 8.1 in C:\Program Files. From Vista, Windows places multiple restrictions on systems folders such as %windir% and %ProgramFiles%.
Uninstall and re-install in a folder where you are not restricted, such as C:\Apps or similar. You should hopefully have no further issues.