Get value from reactive context in R shiny based on user input - r

I need to change the mydb(string) value based on input selected from sidebar.
ui.R
library(shiny)
shinyUI(fluidPage(
titlePanel("Shiny App"),
sidebarLayout(
sidebarPanel( selectInput("site",
label = "Choose a site for Analysis",
choices = c("abc", "def",
"ghi", "jkl"),
selected = "abc")
),
mainPanel(
textOutput("text"),
)
))
server.R
library(shiny)
library(ggplot2)
library(RMySQL)
shinyServer(function(input, output) {
if(input$site=="abc"){
mydb<-"testdb_abc"}
else if(input$site=="def"){
mydb<-"testdb_def"}
con <- dbConnect(MySQL(),dbname=mydb, user="root", host="127.0.0.1", password="root")
query <- function(...) dbGetQuery(con, ...)
output$text <- renderText({
paste("You have selected:",input$site)
})
})
In above server.R, I need to assign string value to mydb based on selected input. I get this error:
Error in .getReactiveEnvironment()$currentContext() :
Operation not allowed without an active reactive context. (You tried to do something that can only be done from inside a reactive expression or observer.)
How can I do that with reactive in shiny?

as previously mentioned you would have to have your if statements in the reactive expression or observe Below is the working example of the sample App. Here I used a reactive expression to check which database you have selected. you can then use the mydb() and put it into your query, like so (I think this should work):
con <- dbConnect(MySQL(),dbname=mydb(), user="root", host="127.0.0.1", password="root")
query <- function(...) dbGetQuery(con, ...)
A sample example is below
library(shiny)
library(ggplot2)
library(RMySQL)
ui =fluidPage(
titlePanel("Shiny App"),
sidebarPanel(selectInput("site",
label = "Choose a site for Analysis",
choices = c("abc", "def","ghi", "jkl"),selected = "abc")),
mainPanel(textOutput("text"),textOutput("db_select"))
)
server = (function(input, output) {
mydb <- reactive({
if(input$site == "abc")
{
test <- c("testdb_abc")
}
else if(input$site == "def")
{
test <- c("testdb_def")
}
})
output$text <- renderText({
paste("You have selected:",input$site)
})
query_output <- reactive({
con <- (dbConnect(MySQL(),dbname=mydb(), user="root", host="127.0.0.1", password="root"))
query <- function(...) dbGetQuery(con, ...)
})
output$db_select <- renderText({
paste("My Database is:",mydb())
})
})
runApp(list(ui = ui, server = server))

Related

Dynamic UI/Server Modules in Shiny Dashboard Based on Inputs in UI

Let's say I have 4 sets of UI/Server modules in 4 different directories ("./X1/Y1/", "./X1/Y2/", "./X2/Y1/", "./X2/Y2/"). I want to load the selected set based on the input in the sidebar.
I tried using source() within dashboardBody(), but I was not successful.
library(shiny)
library(shinydashboard)
# path to modules
in_path <- "C:/a/b/c/"
# ui
ui <- dashboardPage(
dashboardHeader(title = "test"),
dashboardSidebar(
br(),
selectInput('f1', 'Folder 1', choices = c("X1", "X2")),
helpText(""),
selectInput('f2', 'Folder 2', choices = c("Y1", "Y2")),
br(),
actionButton("load", "Load", icon("thumbs-up"), width = "85%")
),
dashboardBody(
# UI module here from, e.g., "C:/a/b/c/X1/Y2/my_UI.R"
)
)
# server
server <- function(input, output, session) {
# server module here from, e.g., "C:/a/b/c/X1/Y2/my_Server.R"
}
shinyApp(ui, server)
As shiny modules are simply functions, I'd source them in the beginning, and use uiOutput to display the differnt modules.
Here's a working example of the general idea (sample module code proudly stolen from the official Shiny documentation):
<mod1.R>
counterButton <- function(id, label = "Counter") {
ns <- NS(id)
tagList(
actionButton(ns("button"), label = label),
verbatimTextOutput(ns("out"))
)
}
counterServer <- function(id) {
moduleServer(
id,
function(input, output, session) {
count <- reactiveVal(0)
observeEvent(input$button, {
count(count() + 1)
})
output$out <- renderText({
count()
})
count
}
)
}
<mod2.R>
csvFileUI <- function(id, label = "CSV file") {
ns <- NS(id)
tagList(
fileInput(ns("file"), label),
checkboxInput(ns("heading"), "Has heading"),
selectInput(ns("quote"), "Quote", c(
"None" = "",
"Double quote" = "\"",
"Single quote" = "'"
))
)
}
csvFileServer <- function(id, stringsAsFactors = TRUE) {
moduleServer(
id,
## Below is the module function
function(input, output, session) {
# The selected file, if any
userFile <- reactive({
# If no file is selected, don't do anything
validate(need(input$file, message = FALSE))
input$file
})
# The user's data, parsed into a data frame
dataframe <- reactive({
read.csv(userFile()$datapath,
header = input$heading,
quote = input$quote,
stringsAsFactors = stringsAsFactors)
})
# We can run observers in here if we want to
observe({
msg <- sprintf("File %s was uploaded", userFile()$name)
cat(msg, "\n")
})
# Return the reactive that yields the data frame
return(dataframe)
}
)
}
<app.R>
library(shiny)
source("mod1.R")
source("mod2.R")
my_mods <- list("Counter Button" = list(ui = counterButton,
server = counterServer),
"CSV Uploader" = list(ui = csvFileUI ,
server = csvFileServer))
ui <- fluidPage(
sidebarLayout(
sidebarPanel(
selectInput("mod_sel",
"Which Module should be loaded?",
names(my_mods))
),
mainPanel(
uiOutput("content"),
verbatimTextOutput("out")
)
)
)
server <- function(input, output) {
uuid <- 1
handler <- reactiveVal()
output$content <- renderUI({
my_mods[[req(input$mod_sel)]]$ui(paste0("mod", uuid))
})
observeEvent(input$mod_sel, {
handler(my_mods[[req(input$mod_sel)]]$server(paste0("mod", uuid)))
uuid <<- uuid + 1
})
output$out <- renderPrint(req(handler())())
}
shinyApp(ui, server)
Some Explanation
You put the module code in mod[12].R and it is rather straight forward.
In your main app, you load both(!) source files and for housekeeping reasons, I put both modules functions (ui and server) in a list, but this is not strictly necessary, but facilitates future extension.
In your UI you have an uiOutput which renders dynamically according to the selected module.
In your server you put the code to dynamically render the UI and call the respective server function.
The uid construct is basically there to force a fresh render, whenever you change the selection. Otherwise, you may see still some old values whenever you come back to a module which you have rendered already.

updating table in Shiny

I've got a table that will initialize, but will not update. I use a few inputs, which then get called by a function to calculate the outputs. They will initialize with the correct values, but when I click the actionButton, nothing happens.
output$view<-renderTable({
tabSvol<-isolate(
data.frame(
S=c(
func1(input$in1),
func2(input$in2),
func3(input$in1,input$2)
)
)
)
tabSvol
})
Here's a MRE that allows you to add rows to a reactive table.
library(shiny)
library(tidyverse)
ui <- fluidPage(
numericInput("a", "A: ", value=NA),
selectInput("b", "B:", choices=c("X", "Y", "Z")),
actionButton("add", "Add row"),
tableOutput("table")
)
server <- function(input, output) {
rv <- reactiveValues(table=tibble(A=numeric(0), B=character(0)))
output$table <- renderTable({
rv$table
})
observeEvent(input$add, {
rv$table <- rv$table %>% add_row(A=input$a, B=input$b)
})
}
shinyApp(ui = ui, server = server)

Unable to access the value of radioButton when created inside a shiny server module

My shinyapp is build using modules, the radioBox component inputId = modelling_type is created in the server, using a renderUI function and stored under outputId = modelling_type_ui
As I'm using modules, I have name spaced my IDs in the mod_ui, and then in order to (attempt!) to use the same name space function in the mod_server I have called it via ns <- parentsession$ns. This doesn't throw an error. But I would now expect to access the value of the RadioBox via input$modelling_type
This isn't working! So I must be calling the value incorrectly.
Here is the code:
library(shiny)
library(shinyalert)
library(shinydashboard)
library(shinyjs)
library(tidyverse)
# modules ------------------------------------------
mod_ui <- function(id){
ns <- NS(id)
fluidPage(
uiOutput(outputId = ns("modelling_type_ui")),
textOutput(outputId = ns("capture"))
)
}
mod_server <- function(id, parentsession){
moduleServer(id,
function(input, output, server){
ns <- parentsession$ns
output$modelling_type_ui = renderUI({
print(input$modelling_type) # this should not be null
radioButtons(
inputId = ns("modelling_type"),
label = "Choose a modelling technique",
choices = c("OLS",
"Bayesian"),
selected = "OLS")
})
output$capture = renderText({ paste0("modelling type selected:", input$modelling_type) })
})
}
# call app ---------------------------------------
# run app
ui <- function(){ mod_ui("mt") }
server <- function(input, output, session){ mod_server("mt", session) }
shinyApp(ui = ui, server = server)
Any help appreciated. Usually I would just call radioButtons in the UI, and use updateradioButtons function in the server, but I'm dealing with a legacy app which uses the below method repeatedly.
To expand on my comment above, here is a MWE that I believe does what you want.
I'm not sure why you're using uiOutput and renderUI. I assume it's needed in your actual use case, but it's not needed here. Also, there's no need to muck about with parentsession and the like.
One reason why your debug print prints NULL is that you haven't defined the radio group at the time you try to print its value.
library(shiny)
library(tidyverse)
mod_ui <- function(id){
ns <- NS(id)
fluidPage(
uiOutput(outputId = ns("modelling_type_ui")),
textOutput(outputId = ns("capture"))
)
}
mod_server <- function(id) {
moduleServer(
id,
function(input, output, session){
ns <- session$ns
output$modelling_type_ui = renderUI({
radioButtons(
inputId = ns("modelling_type"),
label = "Choose a modelling technique",
choices = c("OLS","Bayesian"),
selected = "OLS"
)
})
output$capture <- renderText({
paste0("modelling type selected: ", input$modelling_type)
})
rv <- reactive({
input$modelling_type
})
return(rv)
}
)
}
ui <- function() {
fluidPage(
mod_ui("mt"),
textOutput("returnValue")
)
}
server <- function(input, output, session) {
modValue <- mod_server("mt")
output$returnValue <- renderText({
paste0("The value returned by the module is ", modValue())
})
}
shinyApp(ui = ui, server = server)

RShiny and Modules output. Object of type environment is not subsettable

Dear people of sackoverflow,
I am currently trying to create an app where a user can upload a dataset from various sources. I tried to isolate the code for the upload in a separate Shiny module. However, R throws an error saying that an environment object is not subsettable. I am fairly new to shiny so would appreciate any advice regarding the use of modules too. :)
library(shiny)
fileInputUI <- function(id){
ns <- NS(id)
fileInput(
inputId = ns("file"),
label = "Select a file"
)
}
fileInputServer <- function(id){
moduleServer(id, function(input, output, session){
dataset <- reactive({
req(input$file)
# Get file extension and datapath
ext <- tools::file_ext(input$file$name)
datapath <- input$file$datapath
# Need reactive values to store input data in
read_data_options <- reactiveValues()
read_data_options$sep <- NULL
if(ext == "csv"){
choices_sep <- c(",", ";", "", "\\t")
names(choices_sep) <- c("Comma (,)", "Semicolon (;)", "White space ( )", "Tab separated (\\t)")
showModal(
ui = modalDialog(
selectInput(
inputId = NS(id, "sep"),
label = "Which separator is used for your data",
choices = names(choices_sep),
selected = ""
),
# Input is required so no dismiss button
footer = tagList(
modalButton("Dismiss"),
actionButton(
inputId = NS(id, "submit_csv"),
label = "Submit")
),
easyClose = TRUE
)
)
# Set input value from submit button
observeEvent(
eventExpr = input$submit_csv,
handlerExpr = {
read_data_options$sep <- choices_sep[input$sep]
removeModal()
read.csv(
file = datapath,
sep = read_data_options$sep
)
}
)
} else {
NULL
}
})
dataset
})
}
# Shiny App
ui <- fluidPage(
fileInputUI("test"),
tableOutput("head_data")
)
server <- function(input, output, session) {
dataset <- fileInputServer("test")
output$head_data <- renderTable(head(dataset()))
}
shinyApp(ui, server)
I used modalDialog because I figured it to be the simplest approach to asking users about additional inputs to the read function for example the separator in case of read.csv or the startRow for read.xlsx etc.
Thanks for your replies

Gives Error:object of type 'closure' is not subsettable after using reactive function [duplicate]

I have a Shiny app that includes a number of dropdown selection boxes, the values of which are filled from reading an RDS file. The app also includes a fileInput function to upload new data. How can I change the values in the dropdown boxes to reflect the new data? Currently I can see that the data is uploaded, but the old data remains in the dropdown.
The data that should be uploaded is saved to a file using
saveRDS( data.frame(names=c("Jill","Jane","Megan")),"myDataFrame.rds")
In my app.R file, I first define the 'default' value of the data:
myDataFrame <- data.frame(names=c("Tom","Dick","Harry"))
The content of my app.R is as follows:
library(shiny)
ui <- shinyUI(
fluidPage(
fileInput('file1', 'Choose file to upload',accept = ".rds"),
selectInput("myNames","Names",myDataFrame$names),
tableOutput('contents')
)
)
server <- shinyServer(function(input, output) {
output$contents <- renderTable({
inFile <- input$file1
if (is.null(inFile)) { return(myDataFrame) }
readRDS(inFile$datapath)
})
})
The initial view of the application is as expected: both the dropdown and the table contain the 'default' names. Upon upload of my RDS file containing a new dataframe, the table changes (which is what I was looking for) but the dropdown values do not. How can I make the latter happen?
I added reactive object myData that you have to use for table contents, but more importantly to update choices in selectInput (check observe and updateSelectInput part).
library(shiny)
ui <- shinyUI(
fluidPage(
fileInput("file1", "Choose file to upload", accept = ".rds"),
selectInput("myNames","Names", ""),
tableOutput("contents")
)
)
server <- function(input, output, session) {
myData <- reactive({
inFile <- input$file1
if (is.null(inFile)) {
d <- myDataFrame
} else {
d <- readRDS(inFile$datapath)
}
d
})
output$contents <- renderTable({
myData()
})
observe({
updateSelectInput(session, "myNames",
label = "myNames",
choices = myData()$names,
selected = myData()$names[1])
})
}
shinyApp(ui, server)
to riff off of #PoGibas' answer, I needed to load multiple list values for an app, here is a similar application using reactiveValues and observeEvent :
library(shiny)
# save a dummy RDS for loading
saveRDS(list(names=LETTERS,numbers=seq(10)),'dummy.rds')
# define initial values
myDataList <- list(names=c("Tom","Dick","Harry"), numbers=seq(5))
ui <- shinyUI(
fluidPage(
fileInput("file1", "Choose file to upload", accept = ".rds"),
selectInput("myNames","Names", ""),
selectInput("myNumbers","Numbers", ""),
tableOutput("contents")
)
)
server <- function(input, output, session) {
md <- reactiveValues(
names = myDataList$names,
numbers = myDataList$numbers
)
observeEvent(input$file1,{
d <- readRDS(input$file1$datapath)
for (n in names(d)){
md[[n]] <- d[[n]]
}
})
output$contents <- renderTable({
data.frame(data = c(md$names,md$numbers))
})
observe({
updateSelectInput(session, "myNames",
label = "myNames",
choices = md$names,
selected = md$names[1])
updateSelectInput(session, "myNumbers",
label = "myNumbers",
choices = md$numbers,
selected = md$numbers[1])
})
}
shinyApp(ui, server)

Resources