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I am wanting to use RHadoop packages(rmr, rhdfs, rhbase) on my ubuntu server. These only work with the older version of R 2.15.0 and not on the current 3.0.1 version. I have created a mirror which allowed me to install the 3.0.1 version.
sudo apt-get install r-base-dev
What do I need to change here to get the 2.15.0 version of R?
I have tried using the links but i think I might need to access a new mirror since the link to both downloads are different.
current mirror:
deb http://cran.cnr.berkeley.edu/bin/linux/ubuntu precise/
I assume its getting the most recent file and executing it:
http: //cran.cnr.berkeley.edu/bin/linux/ubuntu/precise/r-base-dev_3.0.1-5precise0_all.deb
The link I want it to follow and install
http: //cran.cnr.berkeley.edu/src/base/R-2/R-2.15.0.tar.gz
After berkeley.edu it is all different but in my mirror it would stay the same. I have tried changing my mirror but haven't had any luck.
If anyone has any suggestions or can lead me down the right path that would greatly help.
-Joey
You will find previous binary builds for Ubuntu in the standard directory, just by hand:
https://cran.r-project.org/bin/linux/ubuntu/
You can always download them manually and then tell the package management system to put them 'on hold', ie to not upgrade. See eg man dpkg for the dpkg --set-selection and the hold state.
You find outdated versions of R at the CRAN page:
http://cran.r-project.org/sources.html
Following a couple of links:
http://cran.r-project.org/src/base/R-2/R-2.15.0.tar.gz
I suppose it is possible that that Debian/Ubuntu repository has the Make files to drive the compilation from source. If not, you can probably find one on the R-Debian mailing list.
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I'm trying to use Github Actions to build a Xaringan presentation.
But it seems that it can't find xaringan.
Other dependencies are installed correctly, even xaringanthemer (see logs link below) !
I tried to see if there is some missing dependencies but even after fiwing that, xaringan is still missing.
Infos
Env: Github Actions
OS: Ubuntu 20.04
R: 4.1.0
REPO_NAME: "https://packagemanager.rstudio.com/all/__linux__/focal/latest"
Config file: https://github.com/gflowiz/article_foss4g2021/blob/presentation_FOSS4G2021/.github/workflows/render-xaringan.yaml
How to reproduce:
clone repo and trigger build
Ideas of possible fix
Signal to Rstudio and wait for a fix ?
That's strange because Xaringan seems to be present on the repo: https://packagemanager.rstudio.com/client/#/repos/1/packages/xaringan
Change repo
Can I change to CRAN instead of packagemanager.rstudio.com ? What's the URL to use ?
Other packages seems to be downloaded from https://cloud.r-project.org/src/contrib
Your issue came from the spelling: you are using xarigan instead of xaringan in your workflow file at line 48
Therefore, when you try installing the package, you got:
In your last workflow run.
Here is a workflow run using the correct syntax
, but it seems to return another error related to a .gitignore file missing after generating the FOSS4G2021_presentation.html output file:
I'll let you handle it from here (as I've never used these tools before) :D
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I've been trying to get GPU support to work for xgboost via h2o in a rocker docker container with little success. Progress so far: GitHub, Docker Hub
I have installed CUDA + nvidia-docker on the host machine and CUDA (9.0 - 9.2) in the container. I'm running the container with the following,
nvidia-docker run -d -p 8787:8787 -e USER=tidyverse-gpu -e PASSWORD=tidyverse-gpu --name tidyverse-gpu seabbs/tidyverse-gpu
Base Xgboost works with GPU support in both R and Python (and nvidia-smi returns usage stats etc when run inside the container). When the GPU backend is enabled in h2o.xgboost the following error is returned.
Illegal argument(s) for XGBoost model: XGBoost_model_R_1548450637489_3. Details: ERRR on field: _backend: GPU backend (gpu_id: 0) is not functional. Check CUDA_PATH and/or GPU installation.
Initially I had not added the CUDA_PATH in the Dockerfile but testing adding this has had no effect.
Sys.getenv("CUDA_PATH")
[1] "/usr/local/cuda"
The h2o startup logs show no issue with the xgboost module (that I can see). I've tried rolling back to CUDA 8.0 but this errors in the latest rocker containers as the gcc version being used is not supported by xgboost.
Any help would be much appreciated as I don't have a clue :)
When I run apt install r-base it provides me with a slightly out-dated version of R. When I tried to look up how to get a newer version, much of what I found did something to the file /etc/apt/source.list. The content of this file is
#deb cdrom:[Linux Mint 18.3 _Sylvia_ - Release amd64 20171124]/ xenial contrib $
Most instructions suggest appending something like
deb http://cran.rstudio.com/bin/linux/debian wheezy-cran3/
But none of the various suggestions I've read have worked--presumably either because they were for non-Mint distros or they were for outdated versions of Mint. I tried taking something that I found, like
http://cran.ma.imperial.ac.uk/bin/linux/ubuntu trusty/
and editing it with the codename that I found elsewhere which seems to be the most recent, hence making it
http://cran.ma.imperial.ac.uk/bin/linux/ubuntu sylvia/
But when I ran the update it couldn't find the repo, presumably because places that have Trusty don't necessarily have Sylvia--although maybe it didn't work for some other reason. (And I notice the UK address which probably is bad for me to be using in America, but I don't really get how I'm supposed to find an address that will have the right files.)
Since I see a number of times when this question has been asked and solutions always seem to be short-lived, applying only so long as that particular version is hosted by that particular address and is the latest version--can I ask something where the answer might have a little more longevity: In general, how do you find the right thing to add to your /etc/apt/source.list file to make this work? How do you find the right repo source (same thing as a mirror?), the current codename, and so on? (It would also be nice to have a generalized procedure for how to solve this, because I basically ran into the same problem on my old computer with a 32-bit architecture, and would like to have R running on that too without having to ask the question a second time--but presumably the specific thing and place I'll have to download for that is different.)
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I need to use sbt for run spark in my fedora box, but what surprised me most is
sbt cannot use in my Fedora, I've tried two fedora machines, both failed.
I guess a lot of people meet this problem before, any ideas?
Thanks.
Jovi
UPDATE
For RPM based distributions ( http://www.scala-sbt.org/0.13/tutorial/Installing-sbt-on-Linux.html ) following instructions work:
curl https://bintray.com/sbt/rpm/rpm | sudo tee /etc/yum.repos.d/bintray-sbt-rpm.repo
sudo yum install sbt
OLD INSTRUCTIONS
Setting up SBT on fedora is pretty straightforward.
Older version sbt-0.12.2:
$ sudo yum localinstall http://scalasbt.artifactoryonline.com/scalasbt/sbt-native-packages/org/scala-sbt/sbt//0.12.2/sbt.rpm
Latest version sbt-0.13.1:
$ sudo yum localinstall http://repo.scala-sbt.org/scalasbt/sbt-native-packages/org/scala-sbt/sbt/0.13.1/sbt.rpm
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I have just, in my groggy morning state, reversed & confused the arguments to ln, replacing /usr/share/zoneinfo/America/Toronto with a link to the non-existant /etc/localtime, when I really wanted to link /etc/localtime to Toronto. Now I have no timezone file for where I live. Does anybody have a copy or know where I could get one? It's just instructions on how to translate unix time into toronto time, but I cat'd a few of the other files, and they don't seem like something I'm up to the task of writing by hand.
I know. At least I've never rm -r'd my /
edit:
Before anybody asks, I just tried sudo dpkg-reconfigure tzdata, gleefully entered "America" then "Toronto", only to crash and read, cp: cannot stat '/usr/share/zoneinfo/America/Toronto': no such file or directory. ARGH.
apt-get install --reinstall tzdata
Depending on which GNU/Linux distro you're using, you may be able to just re-download the whole of the tzdata package using its package manager. I know ArchLinux has a package for the time zone data and so does Debian.
However, you can also manually download the whole package and extract the time zone file that you want.
http://www.246tnt.com/files/Toronto