Wordpress Pagination - wordpress

Question

I have a wordpress site : There is a problem with the pagination.. When I click on 2'nd page it shows up the first one(index page). The other pages are working. Can you help me?
I looked up for errors in the loop but i didn't found anything!
this my index.php code
<?php get_header(); ?>
<div id="content">
<?php if(get_option('freshlife_featured_content_enable') == 'on') { ?>
<div id="featured-content">
<div class="heading">
<span class="heading-text"><?php _e('Featured Articles', 'themejunkie'); ?></span>
</div> <!-- end .heading -->
<ul>
<?php
$counter = 1;
query_posts( array(
'showposts' => get_option('freshlife_featured_post_num'),
'tag' => get_option('freshlife_featured_post_tags')
) );
if( have_posts() ) : while( have_posts() ) : the_post();
?>
<li class="featured-<?php echo $counter; ?>"><?php the_post_thumbnail('featured-thumb', array('class' => 'entry-thumb')); ?><span class="entry-date"><abbr title="<?php the_time('F j, Y'); ?> at <?php the_time('g:i a'); ?>"><?php echo human_time_diff(get_the_time('U'), current_time('timestamp')) . __(' ago', 'themejunkie'); ?></abbr></span><h2 class="entry-title"><?php the_title(); ?></h2></li>
<?php $counter++; endwhile; endif; wp_reset_query(); ?>
</ul>
</div> <!-- end #featured-content -->
<?php } ?>
<div class="heading">
<span class="heading-text"><?php _e('All Stories', 'themejunkie'); ?></span>
</div> <!-- end .heading -->
<?php if (have_posts()) : while (have_posts()) : the_post(); ?>
<?php include(TEMPLATEPATH. '/includes/templates/loop.php'); ?>
<?php endwhile; ?>
<div class="clear"></div>
<?php if (function_exists('wp_pagenavi')) wp_pagenavi(); else { ?>
<div class="pagination">
<div class="left"><?php previous_posts_link(__('Newer Entries', 'themejunkie')) ?></div>
<div class="right"><?php next_posts_link(__('Older Entries', 'themejunkie')) ?></div>
<div class="clear"></div>
</div> <!-- end .pagination -->
<?php } ?>
<?php else : ?>
<?php endif; ?>
</div> <!-- end #content -->
<?php get_sidebar(); ?>
<?php get_footer(); ?>

Answer 1

It's hard to say without looking at the WP_Query generated by the requests.
But I do see something that might be causing problems, query_posts alters the main query, that could be messing with the pagination.
Try to use get_posts instead query_posts, so the main loop is not affected.
A more detailed explanation can be found here