R Studio aborting with time series data [duplicate] - r

Question

I have an example dataframe:
a <- c(1:6)
b <- c("05/12/2012 05:00","05/12/2012 06:00","06/12/2012 05:00",
"06/12/2012 06:00", "07/12/2012 09:00","07/12/2012 07:00")
c <-c("0","0","0","1","1","1")
df1 <- data.frame(a,b,c,stringsAsFactors = FALSE)
Firstly, I want to make sure R recognises the date and time format, so I used:
df1$b <- strptime(df1$b, "%d/%m/%Y %H:%M")
However this can't be right as R always aborts my session as soon as I try to view the new dataframe.
Assuming that this gets resolves, I want to get a subset of the data according to whichever day in the dataframe contains the most data in 'C' that is not a zero. In the above example I should be left with the two data points on 7th Dec 2012.
I also have an additional, related question.
If I want to be left with a subset of the data with the most non zero values between a certain time period in the day (say between 07:00 and 08:00), how would I go about doing this?
Any help on the above problems would be greatly appreciated.

Answer 1

Well, the good news is that I have an answer for you, and the bad news is that you have more questions to ask yourself. First the bad news: you need to consider how you want to treat multiple days that have the same number of non-zero values for 'c'. I'm not going to address that in this answer.
Now the good news: this is really simple.
Step 1: First, let's reformat your data frame. Since we're changing data types on a couple of the variables (b to datetime and c to numeric), we need to create a new data frame or recalibrate the old one. I prefer to preserve the original and create a new one, like so:
a <- df1$a
b <- strptime(df1$b, "%d/%m/%Y %H:%M")
c <- as.numeric(df1$c)
hour <- as.numeric(format(b, "%H"))
date <- format(b, "%x")
df2 <- data.frame(a, b, c, hour, date)
# a b c hour date
# 1 1 2012-12-05 05:00:00 0 5 12/5/2012
# 2 2 2012-12-05 06:00:00 0 6 12/5/2012
# 3 3 2012-12-06 05:00:00 0 5 12/6/2012
# 4 4 2012-12-06 06:00:00 1 6 12/6/2012
# 5 5 2012-12-07 09:00:00 1 9 12/7/2012
# 6 6 2012-12-07 07:00:00 1 7 12/7/2012
Notice that I also added 'hour' and 'date' variables. This is to make our data easily sortable by those fields for our later aggregation function.
Step 2: Now, let's calculate how many non-zero values there are for each day between the hours of 06:00 and 08:00. Since we're using the 'hour' values, this means the values of '6' and '7' (represents 06:00 - 07:59).
library(plyr)
df2 <- ddply(df2[df2$hour %in% 6:7,], .(date), mutate, non_zero=sum(c))
# a b c hour date non_zero
# 1 2 2012-12-05 06:00:00 0 6 12/5/2012 0
# 2 4 2012-12-06 06:00:00 1 6 12/6/2012 1
# 3 6 2012-12-07 07:00:00 1 7 12/7/2012 1
The 'plyr' package is wonderful for things like this. The 'ddply' package specifically takes data frames as both input and output (hence the "dd"), and the 'mutate' function allows us to preserve all the data while adding additional columns. In this case, we're wanting a sum of 'c' for each day in .(date). Subsetting our data by the hours is taken care of in the data argument df2[df2$hour %in% 6:7,], which says to show us the rows where the hour value is in the set {6,7}.
Step 3: The final step is just to subset the data by the max number of non-zero values. We can drop the extra columns we used and go back to our original three.
subset_df <- df2[df2$non_zero==max(df2$non_zero),1:3]
# a b c
# 2 4 2012-12-06 06:00:00 1
# 3 6 2012-12-07 07:00:00 1
Good luck!
Update: At the OP's request, I am writing a new 'ddply' function that will also include a time column for plotting.
df2 <- ddply(df2[df2$hour %in% 6:7,], .(date), mutate, non_zero=sum(c), plot_time=as.numeric(format(b, "%H")) + as.numeric(format(b, "%M")) / 60)
subset_df <- df2[df2$non_zero==max(df2$non_zero),c("a","b","c","plot_time")]
We need to collapse the time down into one continuous variable, so I chose hours. Leaving any data in a time format will require us to fiddle with stuff later, and using a string format (like "hh:mm") will limit the types of functions you can use on it. Continuous numbers are the most flexible, so here we get the number of hours as.numeric(format(b, "%H")) and add it to the number of minutes divided by 60 as.numeric(format(b, "%M")) / 60 to convert the minutes into units of hours. Also, since we're dealing with more columns, I've switched the final subset statement to name the columns we want, rather than referring to the numbers. Once I'm dealing with columns that aren't in continuous order, I find that using names is easier to debug.

Answer 2

Agreeing with Jack. Sounds like a corrupted installation of R. First thing to try would be to delete the .Rdata file that holds the results of the prior session. They are hidden in both Mac and Windows so unless you "reveal" the 'dotfiles'(system files), the OS file manager (Finder.app and Windows Explorer) will not show them. How you find and delete that file is OS-specific task. It's going to be in your working directory and you will need to do the deletion outside of R since once R is started it will have locked access to it. It's also possible to get a corrupt .history file but in my experience that is not usually the source of the problem.
If that is not successful, you may need to reinstall R.