Issues installing dada2 in R v.4.2.1 - r

Question

As the title states, I'm trying to install the dada2 library on R v. 4.2.1, for some upcoming eDNA analyses. However, when trying to run the following installation code:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("dada2", version = "3.15")
I get the following output:
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: https://cran.rstudio.com/
Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23
ucrt)
Old packages: 'brew', 'jsonlite', 'ragg', 'RCurl'
Update all/some/none? [a/s/n]:
When I update the old packages, I get the following output:
There are binary versions available but the source versions are
later:
binary source needs_compilation
jsonlite 1.8.1 1.8.2 TRUE
RCurl 1.98-1.8 1.98-1.9 TRUE
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/brew_1.0-8.zip'
Content type 'application/zip' length 78734 bytes (76 KB)
downloaded 76 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/ragg_1.2.3.zip'
Content type 'application/zip' length 1300158 bytes (1.2 MB)
downloaded 1.2 MB
package ‘brew’ successfully unpacked and MD5 sums checked
package ‘ragg’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\robinc4\AppData\Local\Temp\RtmpwR2WRF\downloaded_packages
installing the source packages ‘jsonlite’, ‘RCurl’
trying URL 'https://cran.rstudio.com/src/contrib/jsonlite_1.8.2.tar.gz'
Content type 'application/x-gzip' length 1053090 bytes (1.0 MB)
downloaded 1.0 MB
trying URL 'https://cran.rstudio.com/src/contrib/RCurl_1.98-1.9.tar.gz'
Content type 'application/x-gzip' length 731611 bytes (714 KB)
downloaded 714 KB
The downloaded source packages are in
‘C:\Users\robinc4\AppData\Local\Temp\RtmpwR2WRF\downloaded_packages’
Warning messages:
1: package(s) not installed when version(s) same as current; use `force =
TRUE` to re-install: 'dada2'
2: In install.packages(update[instlib == l, "Package"], l, repos = repos, :
installation of package ‘jsonlite’ had non-zero exit status
3: In install.packages(update[instlib == l, "Package"], l, repos = repos, :
installation of package ‘RCurl’ had non-zero exit status
Afterwards, I tried this code:
install.packages("devtools")
library("devtools")
devtools::install_github("benjjneb/dada2", ref="v1.16") # change the ref argument to get other versions
And get following output:
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/devtools_2.4.4.zip'
Content type 'application/zip' length 429292 bytes (419 KB)
downloaded 419 KB
package ‘devtools’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\robinc4\AppData\Local\Temp\RtmpwR2WRF\downloaded_packages
> library("devtools")
Loading required package: usethis
> devtools::install_github("benjjneb/dada2", ref="v1.16")
Downloading GitHub repo benjjneb/dada2#v1.16
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?
1: All
2: CRAN packages only
3: None
4: RCurl (1.98-1.8 -> 1.98-1.9) [CRAN]
Enter one or more numbers, or an empty line to skip updates:
I update all old packages, which gives me the following:
GenomeInf... (NA -> 1.2.8 ) [CRAN]
RCurl (1.98-1.8 -> 1.98-1.9) [CRAN]
Installing 2 packages: GenomeInfoDbData, RCurl
There is a binary version available but the source version is
later:
binary source needs_compilation
RCurl 1.98-1.8 1.98-1.9 TRUE
installing the source packages ‘GenomeInfoDbData’, ‘RCurl’
trying URL 'https://bioconductor.org/packages/3.15/data/annotation/src/contrib/GenomeInfoDbData_1.2.8.tar.gz'
Content type 'application/x-gzip' length 11512907 bytes (11.0 MB)
downloaded 11.0 MB
trying URL 'https://cran.rstudio.com/src/contrib/RCurl_1.98-1.9.tar.gz'
Content type 'application/x-gzip' length 731611 bytes (714 KB)
downloaded 714 KB
The downloaded source packages are in
‘C:\Users\robinc4\AppData\Local\Temp\RtmpwR2WRF\downloaded_packages’
Error: Failed to install 'dada2' from GitHub:
! System command 'Rcmd.exe' failed
In addition: Warning messages:
1: In i.p(...) :
installation of package ‘GenomeInfoDbData’ had non-zero exit status
2: In i.p(...) : installation of package ‘RCurl’ had non-zero exit status
I'm not sure what is going wrong here, and my colleagues aren't too sure either... Has anyone here had a similar issue?
Thanks a lot in advance!