I have got the above error compinit:480: compdump: function definition file not found when I run zsh command, I don't have FPATH exported in my .zshrc and have tried to reboot the computer and it didn't work. I have tried to brew install something and it gives me the error after I have done it. May I know how to resolve it.
The echo $FPATH gives me
/Users/tdu1/.oh-my-zsh/plugins/git:/Users/tdu1/.oh-my-zsh/functions:/Users/tdu1/.oh-my-zsh/completions:/Users/tdu1/.oh-my-zsh/cache/completions
Related
I am not able to run a Julia file from the command line despite being able to use Julia fine from inside the REPL and Atom. I receive a zsh: command not found: julia error when I try that. Based on this resource, I ran export PATH="/Applications/Julia-1.4.2.app/Contents/Resources/julia/bin:$PATH" and sudo ln -s /Applications/Julia-1.4.2.app/Contents/Resources/julia/bin/julia /usr/local/bin/julia but it did not resolve the issue. Is there anything else I could try?
edit: I am running macOS Catalina 10.15.5
ls -a /Applications/ showed that the file is actually named Julia-1.4.app
I'm working with R for a while, and I always worked with Rstudio, I tried just now to run a Rscript command in terminal (I have a mac..) and I got this error-
>Rscript script.R
-bash: Rscript: command not found
when I tried to open R in the terminal I go the same error-
>R
-bash: R: command not found
I can run R code with the Rstudio and the R application, but I know there is a way to run R throw the terminal.
Did I miss something when I installed R on my computer? do I need to add R to my PATH?
thanks in advance!
Steps to run R script through Windows command prompt
Set the PATH variable for Rscript.exein the environment variables. Rscript.exe can be found inside bin folder of R. Set the path for Rscript.exe to use Rscript command in Windows command prompt. To check if Rscript.exe has been set environmentally or not, type Rscript in command prompt. The follwoing message should come.
Go to Command Prompt, set the path where your .R file is there.
Run the following command: Here abcd.R is present under Documents folder. So I set path and then run Rscript abcd.R
For those who stumbled upon this but use a mac, you might find this useful. I recently downloaded and installed R and RStudio through the CRAN site. I didn't do it through homebrew. Since I downloaded this install directly from the site, it DID NOT add the RScript executable to my /usr/local/bin directory.
I have locate on my mac so I did a quick lookup:
locate RScript
And I found it here:
/Library/Frameworks/R.framework/Versions/4.0/Resources/bin/Rscript
What I had to do was create a symbolic link to my /usr/local/bin directory to get it to work:
cd /usr/local/bin
ln -s /Library/Frameworks/R.framework/Versions/4.0/Resources/bin/Rscript Rscript
Now I'm able to run Rscript through the command line. This may help someone else out there.
I'm trying to create a batch file to run an R script for me automatically on Windows 7.
Batch file:
"C:\Program Files\R\R-3.2.3\bin\Rscript.exe" CMD BATCH "C:\Users\<my username>\Documents\R\Script Testing\script.R"
pause
R script:
write.csv("hello", "automatic_output.txt")
This script works when I run it in R, but when I try to run the .bat, I get this error:
Fatal error: cannot open file 'CMD': No such file or directory
This happens regardless of whether I paste the code into the command prompt, run the .bat as administrator, or schedule the task.
I tried following the advice given in this thread:
Exporting .csv from R & Batch file
but am seeing the same behavior.
I also used the Windows search to try to find "automatic_output.txt" in case it was being stored in an unexpected location but no results came up.
Lastly,
https://stackoverflow.com/a/23514987 seemed to suggest that I could omit the "CMD BATCH", and when I do I no longer get an error, but automatic_output.txt is still not produced.
Any ideas?
As Thomas pointed out, I needed to change "Rscript.exe" to "R.exe". For future googlers, here is the line of code that worked:
"C:\Program Files\R\R-3.2.3\bin\R.exe" CMD BATCH "C:\Users\<my username>\Documents\R\Script Testing\script.R"
I use autoconf to regenerate the configure file, it works. But when I execute the generated configure file by ./configure, there are some error messages like
./configure: line 3713: syntax error near unexpected token `blas'
./configure: line 3713: ` withval=$with_blas; R_ARG_USE(blas)'
I googled and found that blas is a library, but it still gives the error messages after installing. I have the autoconf with version "autoconf (GNU Autoconf) 2.69" installed on my Mac, and what I am trying to compile is the R source https://svn.r-project.org/R/.
I have run both autoconf -f and autoreconf -f to try to regenerate configure file which has been generated successfully. But, when I run ./configure the error happens again.
The error messages say syntax error near unexpected token blas and withval=$with_blas; R_ARG_USE(blas). I think the problem maybe the unknown function R_ARG_USE. I grep R_ARG_USE in the code base and find that it is defined in the file m4/R.m4:
AC_DEFUN([R_ARG_USE],
[if test "${withval}" = no; then
use_$1=no
else
use_$1=yes
fi
])# R_ARG_USE
Does that mean when I am running autoconf or autoreconf I miss something to let it know the existence of m4/R.m4 ?
I have been stuck here for almost three days, any helps will be appreciated. Thanks a lot.
It seems I have solved this problem. I reinstall the gnu m4 using brew install m4 and the problem solved.
After running autoreconf -i -f, I can get the correct configure file and the R source can be compiled.
Maybe it's the wrong version m4 I have got in Mac.
I have been trying to execute a simple test.R
setwd("C:\Users\jdd\Documents")
test <- 2*6598
filename = "test.csv"
write.csv(test,file=filename)
Via the following command line command in Windows:
"C:\Program Files\R\R-2.15.2\bin\R.exe" CMD BATCH --vanilla --slave "C:\Users\jdd\Documents\test.R"
When I execute this I get the following error:
The system cannot find the path specified.
I have been trying to work out a solution on the basis of the provided error message, but failed so far. Wondering if somebody can help me so I can execute the script directly from the command line. Thanks
Thanks #sebastian-c! I tried to use RScript, which I investigated before. However, the problem was a different one. Appears that in my installation there is a R.exe and Rscript.exe file in .\bin, but also one in .\bin\x64. The first one is not working properly, but the second one is. The comment made by #Roland is very important as well, since once working I got this error message!
The following command did the job:
"C:\Program Files\R\R-2.15.2\bin\x64\Rscript.exe" "C:\Users\jdd\Documents\test.R"
and the corrected text.R is:
setwd("C:\\Users\\jdd\\Documents")
test <- 2*6598
filename = "test.csv"
write.csv(test,file=filename)
As mentioned here, it might has something to do with 64bit version of R.
The problem is that Rscript.exe itself is attempting to access a missing file on the system. The obvious fix is explicitly add 'x64' to the path of the other Rscript.exe that was installed:
"C:\Program Files\R\R-2.15.2\bin\x64\Rscript.exe" --version
R scripting front-end version 3.0.2 (2013-09-25)