Plot time series of different years together - r

I am trying to compare different years' variables but I am having trouble plotting them together.
The time series is a temperature series which can be found in https://github.com/gonzalodqa/timeseries as temp.csv
I would like to plot something like the image but I find it difficult to subset the months between the years and then combine the lines in the same plot under the same months
If someone can give some advice or point me in the right direction I would really appreciate it

You can try this way.
The first chart shows all the available temperatures, the second chart is aggregated by month.
In the first chart, we force the same year so that ggplot will plot them aligned, but we separate the lines by colour.
For the second one, we just use month as x variable and year as colour variable.
Note that:
with scale_x_datetime we can hide the year so that no one can see that we forced the year 2020 to every observation
with scale_x_continous we can show the name of the months instead of the numbers
[just try to run the charts with and without scale_x_... to understand what I'm talking about]
month.abb is a useful default variable for months names.
# read data
df <- readr::read_csv2("https://raw.githubusercontent.com/gonzalodqa/timeseries/main/temp.csv")
# libraries
library(ggplot2)
library(dplyr)
# line chart by datetime
df %>%
# make datetime: force unique year
mutate(datetime = lubridate::make_datetime(2020, month, day, hour, minute, second)) %>%
ggplot() +
geom_line(aes(x = datetime, y = T42, colour = factor(year))) +
scale_x_datetime(breaks = lubridate::make_datetime(2020,1:12), labels = month.abb) +
labs(title = "Temperature by Datetime", colour = "Year")
# line chart by month
df %>%
# average by year-month
group_by(year, month) %>%
summarise(T42 = mean(T42, na.rm = TRUE), .groups = "drop") %>%
ggplot() +
geom_line(aes(x = month, y = T42, colour = factor(year))) +
scale_x_continuous(breaks = 1:12, labels = month.abb, minor_breaks = NULL) +
labs(title = "Average Temperature by Month", colour = "Year")
In case you want your chart to start from July, you can use this code instead:
months_order <- c(7:12,1:6)
# line chart by month
df %>%
# average by year-month
group_by(year, month) %>%
summarise(T42 = mean(T42, na.rm = TRUE), .groups = "drop") %>%
# create new groups starting from each July
group_by(neworder = cumsum(month == 7)) %>%
# keep only complete years
filter(n() == 12) %>%
# give new names to groups
mutate(years = paste(unique(year), collapse = " / ")) %>%
ungroup() %>%
# reorder months
mutate(month = factor(month, levels = months_order, labels = month.abb[months_order], ordered = TRUE)) %>%
# plot
ggplot() +
geom_line(aes(x = month, y = T42, colour = years, group = years)) +
labs(title = "Average Temperature by Month", colour = "Year")
EDIT
To have something similar to the first plot but starting from July, you could use the following code:
# libraries
library(ggplot2)
library(dplyr)
library(lubridate)
# custom months order
months_order <- c(7:12,1:6)
# fake dates for plot
# note: choose 4 to include 29 Feb which exist only in leap years
dates <- make_datetime(c(rep(3,6), rep(4,6)), months_order)
# line chart by datetime
df %>%
# create date time
mutate(datetime = make_datetime(year, month, day, hour, minute, second)) %>%
# filter years of interest
filter(datetime >= make_datetime(2018,7), datetime < make_datetime(2020,7)) %>%
# create increasing group after each july
group_by(year, month) %>%
mutate(dummy = month(datetime) == 7 & datetime == min(datetime)) %>%
ungroup() %>%
mutate(dummy = cumsum(dummy)) %>%
# force unique years and create custom name
group_by(dummy) %>%
mutate(datetime = datetime - years(year - 4) - years(month>=7),
years = paste(unique(year), collapse = " / ")) %>%
ungroup() %>%
# plot
ggplot() +
geom_line(aes(x = datetime, y = T42, colour = years)) +
scale_x_datetime(breaks = dates, labels = month.abb[months_order]) +
labs(title = "Temperature by Datetime", colour = "Year")

To order month differently and sum up the values in couples of years, you've to work a bit with your data before plotting them:
library(dplyr) # work data
library(ggplot2) # plots
library(lubridate) # date
library(readr) # fetch data
# your data
df <- read_csv2("https://raw.githubusercontent.com/gonzalodqa/timeseries/main/temp.csv")
df %>%
mutate(date = make_date(year, month,day)) %>%
# reorder month
group_by(month_2 = factor(as.character(month(date, label = T, locale = Sys.setlocale("LC_TIME", "English"))),
levels = c('Jul','Aug','Sep','Oct','Nov','Dec','Jan','Feb','Mar','Apr','May','Jun')),
# group years as you like
year_2 = ifelse( year(date) %in% (2018:2019), '2018/2019', '2020/2021')) %>%
# you can put whatever aggregation function you need
summarise(val = mean(T42, na.rm = T)) %>%
# plot it!
ggplot(aes(x = month_2, y = val, color = year_2, group = year_2)) +
geom_line() +
ylab('T42') +
xlab('month') +
theme_light()

A slightly different solution without the all dates to 2020 trick.
library(tidyverse)
library(lubridate)
df <- read_csv2("https://raw.githubusercontent.com/gonzalodqa/timeseries/main/temp.csv")
df <- df |>
filter(year %in% c(2018, 2019, 2020)) %>%
mutate(year = factor(year),
month = ifelse(month<10, paste0(0,month), month),
day = paste0(0, day),
month_day = paste0(month, "-", day))
df |> ggplot(aes(x=month_day, y=T42, group=year, col=year)) +
geom_line() +
scale_x_discrete(breaks = c("01-01", "02-01", "03-01", "04-01", "05-01", "06-01", "07-01", "08-01", "09-01", "10-01", "11-01", "12-01"))

Related

Boxplot by month

I have a monthly temporal series with sales in this format (so there's no month or year column):
ts(data = Datos, start = c(2015,1), end = c(2020,12), frequency = 12)
How can I plot a multi-boxplot by month?
If you want to use the boxplots to display the variations for a specific month across the given five years period you can try:
library(tidyverse)
library(tsibble)
ts(data = sample(100), start = c(2015,1), end = c(2020,12), frequency = 12) %>%
as_tsibble() %>%
mutate(month = as.factor(month(index))) %>%
ggplot(aes(month, value)) +
geom_boxplot()

Counting observations in each year from a date range in dplyr

Let's say I have a data.frame consisting of industry type and starting and ending dates (e.g. for an employee).
mydf <- data.frame(industry = c("Government", "Education", "Military", "Private Sector", "Government", "Private Sector"),
start_date = c("2014-01-01", "2016-02-01", "2012-11-01", "2013-03-01", "2012-12-01", "2011-12-01"),
end_date = c("2020-12-01", "2016-10-01", "2014-01-01", "2016-10-01", "2015-10-01", "2014-09-01"))
> mydf
industry start_date end_date
1 Government 2014-01-01 2020-12-01
2 Education 2016-02-01 2016-10-01
3 Military 2012-11-01 2014-01-01
4 Private Sector 2013-03-01 2016-10-01
5 Government 2012-12-01 2015-10-01
6 Private Sector 2011-12-01 2014-09-01
I'd like to create a stacked ggplot bar chart in which each unique year in the start_date column is on the X axis (e.g. 2011-2016) and the y axis represents the total number of observations (the row count) represented in a given industry for that year.
I'm not sure what the right way to manipulate the data.frame to allow for this. Presumably I'd need to manipulate the data to have columns for industry year and count. But I'm not sure how to produce the year columns from a date range. Any ideas?
Convert the date columns to Date, create the 'date' sequence from the 'start_date' to 'end_date' for each row with map2 (from purrr), unnest the list output, count the year and plot with geom_bar
library(dplyr)
library(tidyr)
library(purrr)
library(ggplot2)
mydf %>%
mutate(across(c(start_date, end_date), as.Date)) %>%
transmute(industry, date = map2(start_date, end_date, seq, by = 'day')) %>%
unnest(c(date)) %>%
count(industry, year = factor(year(date))) %>%
ggplot(aes(x = year, y = n, fill = industry)) +
geom_col() +
theme_bw()
If the plot should be separate for each 'industry'
mydf %>%
mutate(across(c(start_date, end_date), as.Date)) %>%
transmute(industry, date = map2(start_date, end_date, seq, by = 'day')) %>%
unnest(c(date)) %>%
count(industry, year = factor(year(date))) %>%
ggplot(aes(x = year, y = n, fill = industry)) +
geom_col() +
facet_wrap(~ industry) +
theme_bw()
-output
As #IanCampbell suggested, the by for seq can be 'year'
mydf %>%
mutate(across(c(start_date, end_date), as.Date)) %>%
transmute(industry, date = map2(start_date, end_date, seq, by = 'year')) %>%
unnest(c(date)) %>%
count(industry, year = factor(year(date))) %>%
ggplot(aes(x = year, y = n, fill = industry)) +
geom_col() +
facet_wrap(~ industry) +
theme_bw()
Is this what you're looking for?
I would recommend using purrr::pmap to create a new data frame with one row for each year based on each row of the original data.
We can use the purrr::pmap_dfr to automatically return a single data frame bound by row.
We can use the ~with(list(...), ) trick to be able to reference columns by name.
Then we can use dplyr::count to count by combinations of columns. Then it's easy.
library(dplyr)
library(purrr)
library(lubridate)
library(ggplot)
mydf %>%
mutate(across(c(start_date, end_date), as.Date),
start_year = year(start_date),
end_year = year(end_date)) %>%
pmap_dfr(~with(list(...),data.frame(industry,
year = seq(start_year, end_year)))) %>%
count(year, industry) %>%
ggplot(aes(x = year, y = n, fill = industry)) +
geom_bar(stat="identity")

ggplot: sums per time unit (e.g. an hour) without group_by() and summarise()

I have the following sample data. It's a list of interviews with a date variable indicating when each interview was completed.
n <- 10000
df <- data.frame(
year = rep(2020,n),
month = sample(1:12, n, replace = T),
day = sample(1:28, n, replace = T),
hour = sample(0:23, n, replace = T),
min = sample(0:59, n, replace = T),
sec = sample(0:59, n, replace = T)
)
df
df %>% mutate(dt = make_datetime(year, month, day, hour, min, sec)) %>%
group_by(format(dt, "%Y/%m/%d")) %>%
summarise(n = n())
My goal is to have a line plot (e.g. number of completed interviews (Y) per week (X) ) where I can easily change the x-axis (e.g. if I'd like to plot the number of interviews per MONTH or MINUTES instead of weeks).
So my question is: Do I always have to use group_by(<TIME UNIT>), then summarise(n = n()) and finally plot it or is there a way to directly calculate/plot the number of interviews per time unit?
Interviews
^
|
| .
| . .
| ... .. .. ... ..... .....
|. . ..
|
|
|__________________________________> Time
Thanks!
You can use stat_bin to automatically bin the counts, with a line geom. The bin widths have to be given as a numeric value of seconds, but this is straightforward since you are using lubridate. Here we'll group by weeks:
df %>%
mutate(dt = make_datetime(year, month, day, hour, min, sec)) %>%
ggplot(aes(x = dt)) +
stat_bin(geom = "line", binwidth = as.numeric(seconds(weeks(1))))
Here by days:
df %>%
mutate(dt = make_datetime(year, month, day, hour, min, sec)) %>%
ggplot(aes(x = dt)) +
stat_bin(geom = "line", binwidth = as.numeric(seconds(days(1))))
You can calculate the number of interviews with the stat-argument in geom_line and the time unit in x.
library(lubridate)
library(ggplot2)
df2 <- df %>%
mutate(dt = make_datetime(year, month, day, hour, min, sec))
# days
ggplot(df2, aes(x = format(dt, "%d"), group = 1)) +
geom_line(stat = "count")
# months
ggplot(df2, aes(x = format(dt, "%m"), group = 1)) +
geom_line(stat = "count")
# weekday
ggplot(df2, aes(x = format(dt, "%w"), group = 1)) +
geom_line(stat = "count")
# week of year
ggplot(df2, aes(x = format(dt, "%W"), group = 1)) +
geom_line(stat = "count")

Spaghetti plot using ggplot in R?

I would like to produce a speghatii plot where i need to see days of the year on the x-axis and data on the y-axis for each Year. I would then want a separate year that had data for only 3 months (PCPNewData) to be plotted on the same figure but different color and bold line. Here is my sample code which produce a graph (attached) where the data for each Year for a particular Day is stacked- i don't want bar graph. I would like to have a line graph. Thanks
library(tidyverse)
library(tidyr)
myDates=as.data.frame(seq(as.Date("2000-01-01"), to=as.Date("2010-12-31"),by="days"))
colnames(myDates) = "Date"
Dates = myDates %>% separate(Date, sep = "-", into = c("Year", "Month", "Day"))
LatestDate=as.data.frame(seq(as.Date("2011-01-01"), to=as.Date("2011-03-31"),by="days"))
colnames(LatestDate) = "Date"
NewDate = LatestDate %>% separate(Date, sep = "-", into = c("Year", "Month", "Day"))
PCPDataHis = data.frame(total_precip = runif(4018, 0,70), Dates)
PCPNewData = data.frame(total_precip = runif(90, 0,70), NewDate)
PCPDataHisPlot =PCPDataHis %>% group_by(Year) %>% gather(key = "Variable", value = "Value", -Year, -Day,-Month)
ggplot(PCPDataHisPlot, aes(Day, Value, colour = Year))+
geom_line()+
geom_line(data = PCPNewData, aes(Day, total_precip))
I would like to have a Figure like below where each line represent data for a particular year
UPDATE:
I draw my desired figure with hand (see attached). I would like to have all the days of the Years on x-axis with its data on the y-axis
You have few errors in your code.
First, your days are in character format. You need to pass them in a numerical format to get line being continuous.
Then, you have multiple data for each days (because you have 12 months per year), so you need to summarise a little bit these data:
Pel2 <- Pelly2Data %>% group_by(year,day) %>% summarise(Value = mean(Value, na.rm = TRUE))
Pel3 <- Pelly2_2011_3months %>% group_by(year, day) %>% summarise(total_precip = mean(total_precip, na.rm = TRUE))
ggplot(Pel2, aes(as.numeric(day), Value, color = year))+
geom_line()+
geom_line(data = Pelly2_2011_3months, aes(as.numeric(day), y= total_precip),size = 2)
It looks better but it is hard to apply a specific color pattern
To my opinion, it will be less confused if you can compare mean of each dataset, such as:
library(tidyverse)
Pel2 <- Pelly2Data %>% group_by(day) %>%
summarise(Mean = mean(Value, na.rm = TRUE),
SEM = sd(Value,na.rm = TRUE)/sqrt(n())) %>%
mutate(Name = "Pel_ALL")
Pel3 <- Pelly2_2011_3months %>% group_by(day) %>%
summarise(Mean = mean(total_precip, na.rm = TRUE),
SEM = sd(total_precip, na.rm = TRUE)/sqrt(n())) %>%
mutate(Name = "Pel3")
Pel <- bind_rows(Pel2,Pel3)
ggplot(Pel, aes(x = as.numeric(day), y = Mean, color = Name))+
geom_ribbon(aes(ymin = Mean-SEM, ymax = Mean+SEM), alpha = 0.2)+
geom_line(size = 2)
EDIT: New graph based on update
To get the graph you post as a drawing, you need to have the day of the year and not the day of the month. We can get this information by setting a date sequence and extract the day of the year by using yday function from `lubridate package.
library(tidyverse)
library(lubridate)
Pelly2$Date = seq(ymd("1990-01-01"),ymd("2010-12-31"), by = "day")
Pelly2$Year_day <- yday(Pelly2$Date)
Pelly2_2011_3months$Date <- seq(ymd("2011-01-01"), ymd("2011-03-31"), by = "day")
Pelly2_2011_3months$Year_day <- yday(Pelly2_2011_3months$Date)
Pelly2$Dataset = "ALL"
Pelly2_2011_3months$Dataset = "2011_Dataset"
Pel <- bind_rows(Pelly2, Pelly2_2011_3months)
Then, you can combine both dataset and represent them with different colors, size, transparency (alpha) as show here:
ggplot(Pel, aes(x = Year_day, y = total_precip, color = year, size = Dataset, alpha = Dataset))+
geom_line()+
scale_size_manual(values = c(2,0.5))+
scale_alpha_manual(values = c(1,0.5))
Does it answer your question ?

ggplot using grouped date variables (such as year_month)

I feel like this should be an easy task for ggplot, tidyverse, lubridate, but I cannot seem to find an elegant solution.
GOAL: Create a bar graph of my data aggregated/summarized/grouped_by year and month.
#Libraries
library(tidyverse)
library(lubridate)
# Data
date <- sample(seq(as_date('2013-06-01'), as_date('2014-5-31'), by="day"), 10000, replace = TRUE)
value <- rnorm(10000)
df <- tibble(date, value)
# Summarise
df2 <- df %>%
mutate(year = year(date), month = month(date)) %>%
unite(year_month,year,month) %>%
group_by(year_month) %>%
summarise(avg = mean(value),
cnt = n())
# Plot
ggplot(df2) +
geom_bar(aes(x=year_month, y = avg), stat = 'identity')
When I create the year_month variable, it naturally becomes a character variable instead of a date variable. I have also tried grouping by year(date), month(date) but then I can't figure out how to use two variables as the x-axis in ggplot. Perhaps this could be solved by flooring the dates to the first day of the month...?
You were really close. The missing pieces are floor_date() and scale_x_date():
library(tidyverse)
library(lubridate)
date <- sample(seq(as_date('2013-06-01'), as_date('2014-5-31'), by = "day"),
10000, replace = TRUE)
value <- rnorm(10000)
df <- tibble(date, value) %>%
group_by(month = floor_date(date, unit = "month")) %>%
summarize(avg = mean(value))
ggplot(df, aes(x = month, y = avg)) +
geom_bar(stat = "identity") +
scale_x_date(NULL, date_labels = "%b %y", breaks = "month")

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