I have a following problem. I prepare a project in R and always get a problem that after knitting formulas are partially outside of pdf document.
Formula issue formatting description
There is a post with similar problem, but it didn't help (R Markdown Knitr to PDF Code Outside Margin)
I have also tried adding "\\", but it also didn't help.
Is there any easy solution about how to organize auto line breaks in formulas in Rmarkdown? I don't want to convert html to pdf since I would lose all internal references then.
I will be very grateful if someone would help!!!
Update:
Here is a sample formula for rmarkdown:
---
title: "Code Sample"
output:
pdf_document: default
html_document: default
---
1) $$ (\sum_{i = 1}^{N} \|x_i - \mu - V_q \lambda_i\|^2)'_\mu = \\
(\sum_{i = 1}^{N} (x_i - \mu - V_q \lambda_i)^T (x_i - \mu - V_q \lambda_i))'_\mu = \\
= \sum_{i = 1}^{N} ((x_i - \mu - V_q \lambda_i)^T (x_i - \mu - V_q \lambda_i))'_\mu = \\
= \sum_{i = 1}^{N} 2 (x_i - \mu - V_q \lambda_i) \cdot (-1) = \\
= \sum_{i = 1}^{N} -2 \cdot (x_i - \mu - V_q \lambda_i) \\
\text{since the degree was 2 and the sign of $\mu$ was '-' (minus)} $$
Welcome to SO, #Irina Mironova!
You could try this, using & to align and \\ to break lines:
---
title: "Aligned equations"
author: "bttomio"
date: "4/7/2021"
output: pdf_document
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```
\begingroup\small
\begin{equation}
\begin{aligned}
ER_t
= & \lambda_1 + \sum_{i=0}^k\alpha_{11i}ER_{t-1} + \sum_{j=k+1}^p\alpha_{12j}ER_{t-j} + \sum_{i=0}^k\beta_{11i}CT_{t-1} + \sum_{j=k+1}^p\beta_{12j}CT_{t-j} \\
+ & \sum_{i=0}^k\gamma_{11i}IRD_{t-1} + \sum_{j=k+1}^p\gamma_{12j}IRD_{t-j} + \sum_{i=0}^k\delta_{11i}VIX_{t-1} + \sum_{j=k+1}^p\delta_{12j}VIX_{t-j} \\
+ & \sum_{i=0}^k\phi_{11i}SM_{t-1} + \sum_{j=k+1}^p\phi_{12j}SM_{t-j} + \sum_{i=0}^k\psi_{11i}SMUS_{t-1} + \sum_{j=k+1}^p\psi_{12j}SMUS_{t-j} +\varepsilon_{1t}
\end{aligned}
\end{equation}
\endgroup
-output
UPDATE
Following the equation supplied by the OP, here is a working example:
---
title: "Code example"
author: "bttomio"
date: "4/9/2021"
output: pdf_document
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```
\begingroup
\begin{equation}
\begin{aligned}
(\sum_{i = 1}^{N} \|x_i - \mu - V_q \lambda_i\|^2)'_\mu = \\
(\sum_{i = 1}^{N} (x_i - \mu - V_q \lambda_i)^T (x_i - \mu - V_q \lambda_i))'_\mu = \\
\sum_{i = 1}^{N} ((x_i - \mu - V_q \lambda_i)^T (x_i - \mu - V_q \lambda_i))'_\mu = \\
\sum_{i = 1}^{N} 2 (x_i - \mu - V_q \lambda_i) \cdot (-1) = \\
\sum_{i = 1}^{N} -2 \cdot (x_i - \mu - V_q \lambda_i) \\
\text{since the degree was 2 and the sign of $\mu$ was '$-$' (minus)}
\end{aligned}
\end{equation}
\endgroup
-output
What happens when you use specific margins in PDF output?
---
title: "Habits"
author: John Doe
date: March 22, 2005
geometry: "left=3cm,right=3cm,top=2cm,bottom=2cm"
output: pdf_document
---
Related
I would like to manually number equations in a bookdown project. However, bookdown seems to auto number equations according to the chapter. Is there a way to turn this option off?
Here is an example equation in the second chapter:
$$
\begin{aligned}
y = 2x
\end{aligned}(\#eq:1) \tag{1}
$$
then, the rendered output produces
\begin{aligned}
y = 2x
\end{aligned}\tag{1}\tag{2.1}
You can use {equation*}.
Compare:
---
title: "Numbering"
header-includes: \usepackage{amsmath}
output:
pdf_document:
latex_engine: xelatex
---
\begin{equation}
y = mx+b
\end{equation}
\begin{equation}
\tag{}
y = mx+b
\end{equation}
\begin{equation*}
y = mx+b
\end{equation*}
$$
\begin{aligned}
y = mx+b
\end{aligned}(\#eq:1) \tag{1}
$$
So I am trying to get Latex in my Jupyter Lab going.
If I insert this
\begin{eqnarray}
y & = & ax^2 + bx + c \\
f(x) & = & x^2 + 2xy + y^2
\end{eqnarray}
it gets rendered as expected
But
\begin{itemize}
\item First.
\item Second.
\end{itemize}
gets rendered as the text
I already installed #jupyterlab/latex extension
I have a latex equation as part of an RMarkdown document that I'm knitting to an HTML file using knitr. I would like to use the LaTeX eqnarray to align the equality signs. However, I would also like to change font sizes from the first equation to the next.
This works, but equality signs are not lined up:
---
title: "Test"
author: "Eric"
date: "5/14/2020"
output: html_document
---
\[
\large a = b \times (c + d)\\
{\small\begin{eqnarray}
a &=& \mathrm{var ~a}\\
b &=& \mathrm{var ~b}\\
c &=& \mathrm{var ~c}
\end{eqnarray}}
\]
The result:
I tried many different arrangements of brackets and terms. Here is an example that does not work:
---
title: "Test"
author: "Eric"
date: "5/14/2020"
output: html_document
---
#### Try to line up equal signs AND change font sizes (doesn't work)
\[
\begin{eqnarray}
\large a &=& b \times (c + d)\\
{\small
a &=& \mathrm{var ~a}\\
b &=& \mathrm{var ~b}\\
c &=& \mathrm{var ~c}}
\end{eqnarray}
\]
#### Try again (doesn't work):
\[
\begin{eqnarray}
{\large a &=& b \times (c + d)}
{\small
\\a &=& \mathrm{var ~a}\\
b &=& \mathrm{var ~b}\\
c &=& \mathrm{var ~c}}
\end{eqnarray}
\]
How do I line up the equal signs using eqnarray while changing font sizes?
This seems to be what you'd want:
\[
\small
\begin{eqnarray}
{\large a}\ & {\large =} & {\large b \times (c + d)}\\
a &=& \mathrm{var ~a}\\
b &=& \mathrm{var ~b}\\
c &=& \mathrm{var ~c}
\end{eqnarray}
\]
The spacing for the a is a little bit off, which is why I added the \ after it. You might want to fiddle with that.
I'm trying to create nicely formatted equations in RMarkdown, but I cannot seem to get it to Knit without errors. The LaTeX chunk I have looks like this:
---
title: "Untitled"
author: "KirkD-CO"
date: "September 18, 2019"
output: pdf_document
---
$$
f(x) = \beta_0 + \beta_1 x + \beta_2 x^2 + \beta_3 x^3 + \beta_4 (x-\xi)^3_+
\\
\begin{equation}
(x-\xi)^3_+ =
\begin{cases}
(x-\xi)^3 \ , \ x>\xi
\\
0 \ \ \ \ \ \ \ \ \ \ \ \ \ , \ x\leq\xi
\end{cases}
\end{equation}
\\
\
\\
\begin{aligned}
(x \leq \xi) \Rightarrow f(x) &= \beta_0 + \beta_1 x + \beta_2 x^2 + \beta_3 x^3
\\
(x > \xi) \Rightarrow f(x) &= \beta_0 + \beta_1 x + \beta_2 x^2 + \beta_3 x^3 + \beta_4(x^3 -3x^2\xi + 3x\xi^2 - \xi^3)
\\
&=(\beta_0 + \beta_4\xi^3) + (\beta_1 + 3\beta_4\xi^2)x + (\beta_2 - 3\beta_4)
\end{aligned}
$$
And in RStudio I see this:
But when I try to Knit it, I get this error:
! LaTeX Error: Bad math environment delimiter.
I've search Google and StackOverflow and found many similar problems with answers suggesting using [ ] instead of \begin{equation}, other suggest using only one $ instead of $$, and still others refer to a variety of LaTeX packages, a few of which I've tried and wound up in installation purgatory.
Any suggestion on a straight forward way to get Kniter to Knit a PDF with the output RStudio displays?
EDIT: I'm using R 3.5.3 and Kniter 1.22 on Fedora 30.
EDIT2: Under Tools -> Global Options -> Sweave -> Typeset LaTeX into PDF using: is set to pdfLaTeX
Following up from the comments, here is a cleaned version:
---
title: "Untitled"
author: "KirkD-CO"
date: "September 18, 2019"
output: pdf_document
---
$$
f(x) = \beta_0 + \beta_1 x + \beta_2 x^2 + \beta_3 x^3 + \beta_4 (x-\xi)^3_+
$$
$$
(x-\xi)^3_+ =
\begin{cases}
(x-\xi)^3\, ,& x>\xi \\
0 ,& x\leq\xi
\end{cases}
$$
$$
\begin{aligned}
(x \leq \xi) \Rightarrow f(x) &= \beta_0 + \beta_1 x + \beta_2 x^2 + \beta_3 x^3 \\
(x > \xi) \Rightarrow f(x) &= \beta_0 + \beta_1 x + \beta_2 x^2 + \beta_3 x^3 + \beta_4(x^3 -3x^2\xi + 3x\xi^2 - \xi^3) \\
&=(\beta_0 + \beta_4\xi^3) + (\beta_1 + 3\beta_4\xi^2)x + (\beta_2 - 3\beta_4)
\end{aligned}
$$
Producing
Some specific comments:
Put separate LaTeX math mode chunks into separate $$ ... $$ (or \[ ... \] environments (unless you use a multi-line math environment, see below).
Inside a cases environment, use & for horizontal alignment of different parts in every case
Don't use \\ unless you're using some multi-line math environment (like cases, aligned); conversely, if you do use a multi-line math environment, you must separate lines with \\.
I'm having some difficulty left aligning equations in R Markdown (i.e. putting the equation on the far left side of page, and aligning subsequent lines). I've generally determined that I want to set the [fleqn] option in the amsmath package to left align all equations, but putting the following in my YAML header gives an error
'Option clash for package amsmath'
---
author: "ME"
date: "February 26, 2015"
header-includes:
- \usepackage[fleqn]{amsmath}
output: pdf_document
---
A section from my document:
$$
\begin{aligned}
Bias(\hat{\theta}) &= E(\hat{\theta}) - \theta \\
&= E(2 \bar{X} -1) - \theta \\
&= \frac{2}{n}\sum_{i=1}^n E(X_i) -1 -\theta \\
&= 2E(X) - 1 - \theta \\
&= 2 \cdot \frac{\theta+1}{2} - 1 - \theta \\
&= 0 \\
\end{aligned}
$$
Thanks
Try using $...$ instead of $$...$$.
In the case of $$...$$ in Rmarkdown is center aligned by default
This question has already been asked here: R Markdown Math Equation Allignment
The below works for me:
$\begin{aligned}
Bias(\hat{\theta}) &= E(\hat{\theta}) - \theta \\
&= E(2 \bar{X} -1) - \theta \\
&= \frac{2}{n}\sum_{i=1}^n E(X_i) -1 -\theta \\
&= 2E(X) - 1 - \theta \\
&= 2 \cdot \frac{\theta+1}{2} - 1 - \theta \\
&= 0 \\
\end{aligned}$
$ L(x_{1}, x_{2}, ..., x_{n}| \mu) = \mu * (1-\mu) $
$log (\ L(x_{1}, x_{2}, ..., x_{n}| \mu)) = h * log(\mu) + (m-h) * log(1-\mu) $
$\frac{\partial log(\ L(x_{1}, x_{2}, ..., x_{n}| \mu)}{\partial(\mu)} = \frac{h}{\mu} + \frac{h-m}{1-\mu} $
#### We set this to zero to find the value that maximizes the likelihood
$\frac{h}{\mu} + \frac{h-m}{1-\mu} = 0 $
$h = m * \mu $
$\mu = \frac{h}{m} $