I have a long string which I want in a table, for instance 100x the letter A (AAA...). I would like kable to split this string into multiple lines if they don't fit in the table instead of making these strings overflow such as shown
here.
I noticed kable is actually able of doing so, provided there are newlines or -'s in your string, see for instance here.
However, I would like kable to do this splitting on either selected characters or on any character, so the output result would be this, but I don't know how to achieve this. I had a look on SO and in the kableextra documentation, but no luck. Any suggestions?
Below is a chunk to play around with.
---
title: 'rasstasrt'
sansfont: Calibri Light
output: pdf_document
---
```{r setup, include=FALSE}
library(kableExtra);
library(dplyr)
knitr::opts_chunk$set(cache = F)
```
```{r}
dt <-tibble(Items =c("AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaAAa", "Item 2", "Item 3"),
Tmd5ext_1 =c("Lorem ipsum "),
Text_2 =c("Duis pos "))
kableExtra::kable(dt, "latex", booktabs = F, col.names =c("Item", "Short Title", "Veryong Title")) %>% column_spec(1:3, width = "5cm", )
```
You can leverage the newline character in latex, \\ and the argument escape = FALSE in kableExtra::kable(). Settting escape = FALSE causes the \\ to be read as newline characters instead of literal \\. Note that because \ is an escape character in R, you need two slashes \\ in order for R to interpret a single slash \, so to get 2 literal slashes \\ you need to put 4 \\\\ in the string.
---
title: 'rasstasrt'
sansfont: Calibri Light
output: pdf_document
---
```{r setup, include=FALSE}
library(kableExtra)
library(dplyr)
knitr::opts_chunk$set(cache = F)
```
```{r}
dt <-tibble(Items = c("AAAAAAAAAAAAAAA\\\\AAAAAAAAAA\\\\AAAAAAAAAAA\\\\AAAAAAAAAAAAA\\\\AAAAAAaaaaAAa",
"Item 2",
"Item 3"),
Tmd5ext_1 = c("Lorem ipsum "),
Text_2 = c("Duis pos "))
kableExtra::kable(dt,
"latex",
booktabs = F,
col.names =c("Item", "Short Title", "Veryong Title"),
escape = FALSE) %>%
column_spec(1:3, width = "5cm")
```
Alternatively, if you wanted to insert the newline after a specific number of characters, you could write a function to do that.
---
title: 'rasstasrt'
sansfont: Calibri Light
output: pdf_document
---
```{r setup, include=FALSE}
library(kableExtra)
library(dplyr)
knitr::opts_chunk$set(cache = F)
```
```{r}
add_return <- function(x, len) {
# intialize empty vector
y <- c()
# start at beginning of string
i <- 1
# Break string up into lengths of len
while(i < nchar(x)) {
y <- c(y,substr(x, i, i + len - 1))
i <- i + len
}
# concatenate the substrings together with the newline characters
paste0(y, collapse = "\\\\")
}
dt <-
tibble(
Items = c(
add_return(
"AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaAAa",
len = 5
),
"Item 2",
"Item 3"
),
Tmd5ext_1 = c("Lorem ipsum "),
Text_2 = c("Duis pos ")
)
kableExtra::kable(
dt,
"latex",
booktabs = F,
col.names = c("Item", "Short Title", "Veryong Title"),
escape = FALSE
) %>% column_spec(1:3, width = "5cm")
```
You could also use regular expressions to insert the return after a specific character string.
---
title: 'rasstasrt'
sansfont: Calibri Light
output: pdf_document
---
```{r setup, include=FALSE}
library(kableExtra)
library(dplyr)
knitr::opts_chunk$set(cache = F)
```
```{r}
regex_add_return <- function(x, after) {
gsub(pattern = paste0("(",after,")"), replacement = paste0("\\1\\\\\\\\"),x)
}
dt <-
tibble(
Items = c(
regex_add_return(
"AAAAAAAAAAAAAAAz123AAAAAAAAAAAAAAAz123AAAAAAAAAAz123AAAAAAAAAAAAAAAaaaaAAa",
after = "z123"
),
"Item 2",
"Item 3"
),
Tmd5ext_1 = c("Lorem ipsum "),
Text_2 = c("Duis pos ")
)
kableExtra::kable(
dt,
"latex",
booktabs = F,
col.names = c("Item", "Short Title", "Veryong Title"),
escape = FALSE
) %>% column_spec(1:3, width = "5cm")
```
Note that there are 8 slashes in gsub() because the slash is also an escape character for regular expressions, so each literal slash has to be escaped with a slash, but then each slash that is being used as an escape character for regex also has to be escaped again for R, requiring another slash.
Related
I want to change the numbering of the tables in the RMarkdown document so that all tables in the appendix have an "A-" in front of the number, thus: "Table A-2".
Only in the appendix. Otherwise with normal numbering ("Table 1").
However, I am not really getting anywhere.
Here is my reproducible example:\
---
title: "This is my title"
date: "`r Sys.setlocale(locale = 'English') ; format(Sys.time(), '%B %d, %Y')`"
output: pdf_document
---
```{r echo = F, message = F, warning = F}
library(tidyverse)
library(knitr)
``` #The hash mark must be removed!
# Results
```{r echo = F, message = F, warning = F}
tribble(~column1, ~column2,
"value1", 2,
"value2", 5
)%>%
kable(booktabs=T, caption = "This is the caption of the first table")
```
# Appendix
```{r echo = F, message = F, warning = F}
tribble(~column1, ~column2,
"value1", 6,
"value2", 8
)%>%
kable(booktabs=T, caption = "This is the caption of the second table")
```
This is really a LaTeX question, and I found the answer here.
You add these LaTeX lines after your Appendix title:
\setcounter{table}{0}
\renewcommand{\thetable}{A\arabic{table}}
After days trying to find a solution, I give up and ask for help.
I decided to use R Markdown very recently. While I can render plots as I want, I cannot succeed in rendering my tables in a pdf doc properly.
Here the corresponding [EDITED]code:
---
title: "My_title"
output:
pdf_document: default
html_document:
df_print: paged
params:
date: "!r Sys.Date()"
---
```{r library, echo=F, message=F, warning=F, paged.print=FALSE}
suppressMessages(library("knitr"))
suppressMessages(library(reshape2))
suppressMessages(library(splines))
suppressMessages(library(kableExtra))
suppressMessages(library(gplots))
```
```{r, setup, echo = F}
opts_knit$set(root.dir = "my_path")
knitr::opts_chunk$set(echo = F)
```
```{r}
dt <- expand.grid(Region=c("a","b","c"), Country=c("d","e","f"), Cancer= c("All", "CRC", "Breast"),
age.1.1=1:2,
age.1.2=1:2,
age.1.3=1:2)
```
```{r Table_1, INCLUDE = TRUE}
cancer.lab <- c("All", "CRC", "Breast")
for (i in 1:3){
b <- dt[dt$Cancer==cancer.lab[i],]
b <- b[,-3]
t <- kable(b, format = ,caption = "Fig", row.names = F) %>%
kable_paper() %>%
kable_styling(font_size = 9) %>%
add_header_above(c(" " = 2, "1998" = 3))
print(t)
}
```
Again I am new and I surely miss something.
I use Mac if it may explain something.
Thank you for your help.
Sophie.
I think this is the same issue as dealt with here: https://stackoverflow.com/a/53632154/2554330. The problem is that you need to use knit_print to print the tables, but you can't do that in a loop.
So if you change the last code chunk to this, it should work:
```{r Table_1, INCLUDE = TRUE}
results <- c()
cancer.lab <- c("All", "CRC", "Breast")
for (i in 1:3){
b <- dt[dt$Cancer==cancer.lab[i],]
b <- b[,-3]
t <- kable(b, format = ,caption = "Fig", row.names = F) %>%
kable_paper() %>%
kable_styling(font_size = 9) %>%
add_header_above(c(" " = 2, "1998" = 3))
results <- c(results, knit_print(t))
}
asis_output(results)
```
I'm trying to render a pander table in RMarkdown that includes superscript. Here is my current RMarkdown code:
```
---
title: "My Table"
output: html_document
---
```{r packages, include = FALSE}
library(tidyverse)
library(pander)
```
```{r my_table}
my_table <-
data.frame(
c("Sector 1",
"Sector 2",
"Sector 3"),
c("100%",
"29%",
"NA"))
pander(my_table,
col.names = c("Sector", "% Coverage"),
split.cells = 40,
keep.line.breaks = TRUE)
```
And here is the knit result:
I would like to add a superscripted letter "c" to the "NA" cell of the table, yielding an output like this:
You are looking to use the notation $$ NA^c $$, but this only works outside of the R chunk at the moment.
How can I insert 'equal or greater than' symbol in a kable?
On the small rmarkdown doc below I tried two different ways based on some
internet suggestions but neither work. I did try the argument 'escape=FALSE' but
it does not work either. Thanks for any pointers...
title: "Math symbols in column headers"
date: "January 15, 2020"
output: pdf_document
---
```{r}
library(kableExtra)
library(knitr)
a <- structure(list(MLE = c(0.0839, 0.2082, 0.4194, 0.8237, 1.6201
), MME = c(0.0839, 0.2082, 0.4194, 0.8234, 1.6147)), class = "data.frame", row.names = c(NA,
5L))
colnames(a) <- c("abundance of\n White Sharks\n $\\\\geq$ 40 inches","Percentage of \n White shark in
the population\n $\\\\geq{40}$ inches")
```
```{r}
kable(a, "latex", booktabs = T)
```
This is what I get...
You need to end up with \geq in the Markdown file. To get that, you enter "\\geq" in the R string, and specify escape = FALSE in the call to kable(). That is,
---
title: "Math symbols in column headers"
date: "January 15, 2020"
output: pdf_document
---
```{r}
library(kableExtra)
library(knitr)
a <- structure(list(MLE = c(0.0839, 0.2082, 0.4194, 0.8237, 1.6201
), MME = c(0.0839, 0.2082, 0.4194, 0.8234, 1.6147)), class = "data.frame", row.names = c(NA,
5L))
colnames(a) <- c("Abundance of\n White Sharks\n $\\geq 40$ inches","Percentage of \n White shark in
the population\n $\\geq 40$ inches")
```
```{r}
kable(a, "latex", booktabs = T, escape = FALSE)
```
This gives me
To respect the linebreaks, you need to use the linebreak function from kableExtra, i.e. something like this:
colnames(a) <- linebreak(c("Abundance of\n White Sharks\n $\\geq 40$ inches",
"Percentage of \n White shark in the population\n $\\geq 40$ inches"))
kable(a, "latex", booktabs = TRUE, escape = FALSE, align = "c")
which gives this output:
I'm trying to produce table to a Latex-pdf document. I'm using kableExtra and knitr in R.
I have a table that has long column names. When I rotate the header row by 90 degrees linebreaks won't work. Does anyone have an idea how I could achieve both rotated row and linebreaks?
My example is the same as in Hao's Best Practice for newline in Latex table, but I added piped row_spec to the end of the code.
\documentclass[10pt,a4paper]{article}
\usepackage[table]{xcolor}
\begin{document}
\begin{table}
<<global_options, echo=FALSE>>=
library(kableExtra)
library("dplyr")
dt_lb <- data.frame(
Item = c("Hello\nWorld", "This\nis a cat"),
Value = c(10, 100)
)
dt_lb %>%
mutate_all(linebreak) %>%
kable("latex", booktabs = T, escape = F,
col.names = linebreak(c("Item\n(Name)", "Value\n(Number)"))) %>%
row_spec(0, angle = 90, align='l', monospace=T)
#
\end{table}
\end{document}
What I get is this, but the [l] tags hint that there's something else wrong with the tags as well:
On StackExchange TEX I found a question about rotation and linebreaks, this is what I'm trying achieve: https://tex.stackexchange.com/questions/14730/big-table-with-rotated-column-labels-using-booktabs
You could use tableHTML:
library(tableHTML)
Replace the new line character "\n" with the HTML tag <br>:
headers <- c("Item\n(Name)", "Value\n(Number)") %>%
stringr::str_replace_all(pattern = "\\n", replacement = "<br>")
Create a tableHTML object and rotate the headers using add_css_header():
dt_lb %>%
tableHTML(rownames = FALSE,
headers = headers,
escape = FALSE,
widths = c(100, 100),
theme = 'scientific') %>%
add_css_header(css = list(c('transform', 'height', 'text-align'),
c('rotate(-45deg)', '70px', 'center')),
headers = 1:2)
The result looks like this:
Note: you can add more css or default themes. Check out the vignettes for more details:
If you want to create a pdf document, you could use RMarkdown:
---
title: "tableHTML2pdf"
output: html_document
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = FALSE)
```
\
```{r}
library(tableHTML)
dt_lb <- data.frame(
Item = c("Hello\nWorld", "This\nis a cat"),
Value = c(10, 100)
)
headers <- c("Item\n(Name)", "Value\n(Number)") %>%
stringr::str_replace_all(pattern = "\\n", replacement = "<br>")
dt_lb %>%
tableHTML(rownames = FALSE,
headers = headers,
escape = FALSE,
widths = c(100, 100),
theme = 'scientific') %>%
add_css_header(css = list(c('transform', 'height', 'text-align'),
c('rotate(-45deg)', '70px', 'center')),
headers = 1:2)
```
\
It will then create an HTML file. This file can then be converted to PDF using wkhtmltopdf.
I think you probably rendered your rmarkdown document into HTML... In the rmarkdown yaml header, does it say html_document right now? If so, you can try to change it to pdf_document.....
I rendered a pdf_document with exactly the same code and I think I got what you were looking for...
---
title: "Table Sample"
output: pdf_document
---
``` {r, include = FALSE}
library(tidyverse)
library(kableExtra)
```
```{r}
dt_lb <- data.frame(
Item = c("Hello\nWorld", "This\nis a cat"),
Value = c(10, 100)
)
dt_lb %>%
mutate_all(linebreak) %>%
kable("latex", booktabs = T, escape = F,
col.names = linebreak(c("Item\n(Name)", "Value\n(Number)"), align = "c")) %>%
row_spec(0, angle = 90)
```
Latex package makecell was missing.
Hao pointed out that Page 3 of this manual lists some of the necessary Latex packages: haozhu233.github.io/kableExtra/awesome_table_in_pdf.pdf