I can't get write.csv or write.table to work in the r editor of BlueSky Statistics.
I usually just use this format in RStudio and it works perfectly.
write.csv(df, "zzz.csv")
Any hints?"
The default install location for BlueSky Statistics is 'C:\Program Files', where by default, there is no write permission (for creating or deleting files). Also, saving a file in the install location is not safe, as the file may get lost/deleted when the application is uninstalled. So it is always good to save your file(s) in your own folder(s) where you also have write permission.
In short, try to provide a writable location/path in write.csv() or other similar functions/commands.
See example below:
To save your file to the Desktop folder.
write.csv(df, "C:/Users/<YourUsername>/Desktop/zzz.csv")
Note: use forward slash(/) as a path separator.
Related
I have to convert .xls or .xlxs file to .csv file without using plugins or tools using Unix Command
Is their any way to do this ?
I Tried to do like this below ...But not working
Change the characterSet code from .xls file to UTF-8 encoding
Then create file again with extension change
cp temp.xls temp.csv
It is possible, but you need to realise that an *.xls file is a zipped directory structure (just unzip such a file, using Winzip or 7-zip). The unzipping can also be done using UNIX commands.
But what then? The directory structure is quite complicated to understand, and in order to create a script or a program which can do this (without using any external tools) is a tremendous work, so I'd propose you, either to use external tools anyway, or to make sure the files you receive already are CSV format.
On a mac using iCloud file optimization, large files that are seldom used are uploaded to iCloud and only a small pointer file is left. When I look for the file in Finder, I see the file name and to the left is an icon that indicates that the file is in the cloud. To access the file, I click on the icon and the file is downloaded. With the file.exist command, R returns FALSE for the existence of the file. But after some research I found that the file link is stored in a directory below ~/Library/Mobile\ Documents/com~apple~CloudDocsand the file name is changed to xxx.icloud where xxx is the original file name.
Here's an example of the path to a a directory that holds a .icloud file from a shell in my mac
/Users/gcn/Library/Mobile Documents/com~apple~CloudDocs/Documents/workspace/nutmod/data-raw/NutrientData
I can query for the existence of the file with exists(xxx.icloud). But how do I tell my mac to download the iCloud file and then read it in? Using something like read.table or read.csv doesn't work because the pointer file is not csv.
You can read a csv file directly from a iCloud folder on the Mac by using the path to that folder. Get the path by finding it in the finder. Then right click on the filename at the bottom of the finder window where it shows all the folders leading to the file and choose: Copy "YourFile" as Pathname.
That path will look something like this:
"/Users/NAME/Library/Mobile
Documents/com~apple~CloudDoc/Docs/YourFile.csv"
Use that in your read code:
iCloudDat <- read_csv("/Users/NAME/Library/Mobile Documents/com~apple~CloudDocs/Documents/YourFileName.csv")
That should work.
If the extension isn't .txt or .csv read.table and read.csv won't work.
you have to download the file and extract the tables to a readable format.
you can download the file using download.file() which is is the utils basic library.
I am running some R code on a Windows computer using RStudio and my code generates Excel files and netCDF files periodically (dozens of them eventually). I don't want them to clutter my working directory. Is there a way to save the files to a directory called "Output" (ex: C:/.../original file path/Output) in the parent directory? I would like a way to change my current working directory to a different directory. I understand there is getwd() and setwd() but how do I set the path to the output directory without typing out the entire windows path (for example: setwd(current source file path for windows or Mac/output). My collaborator uses a Mac and he would have his output stored there as well.
You have a file argument in your write* function. If your Output directory is in your working directory, it works like this:
write.xlsx(df, file = "Output/table.xlsx")
write.csv(df, file = "Output/table.csv")
You can specify an argument in your write.csv function and other similar write functions which specifies your path.
#Output path
OutPath<- "C:/blah/blahblah/op/"
#Table to dump as output
OutTbl <- iris
write.csv(OutTbl, file = OutPath)
Source: https://stat.ethz.ch/R-manual/R-devel/library/utils/html/write.table.html
Im running an analysis in RStudio and use sink to store the output in a file because the line count is too large to manually copy it from the console. The code is:
sink("filename.txt")
...analysis
sink()
Now, where can I find the filename.txt file on my machine?
Thanks
If anyone else finds this post I recommend checking where your directory is before your sink statement.
getwd()
Just in case that is not where you want it to go.
I also keep a default output file destination and set that directory before my sink statement, and redirect after the statement.
Just found it myself, RStudio stores it under My Documents by default.
How do I start a new .R file default in a new session for new objects in that session?
Workspaces are .RData files, not .R files. .R files are source files, i.e. text files containing code.
It's a bit tricky. If you saved the workspace, then R saves two files in the current working directory : an .RData file with the objects and a .RHistory file with the history of commands. In earlier versions of R, this was saved in the R directory itself. With my version 2.11.1, it uses the desktop.
If you start up your R and it says : "[Previously saved workspace restored]", then it loaded the file ".RData" and ".RHistory" from the default working directory. You find that one by the command
getwd()
If it's not a desktop or so, then you can use
dir()
to see what's inside. For me that doesn't work, as I only have the file "desktop.ini" there (thank you, bloody Windoze).
Now there are 2 options : you manually rename the workspace, or use the command:
save.image(file="filename.RData")
to save the workspaces before you exit. Alternatively, you can set those options in the file Rprofile.site. This is a text file containing the code R has to run at startup. The file resides in the subdirectory /etc of your R directory. You can add to the bottom of the file something like :
fn <- paste("Wspace",Sys.Date(),sep="")
nfiles <- length(grep(paste(fn,".*.RData",sep=""),dir()))
fn <- paste(fn,"_",nfiles+1,".RData",sep="")
options(save.image.defaults=list(file=fn))
Beware: this doesn't do a thing if you save the workspace by clicking "yes" on the message box. You have to use the command
save.image()
right before you close your R-session. If you click "yes", it will still save the workspace as ".RData", so you'll have to rename it again.
I believe that you can save your current workspace using save.image(), which will default to the name ".RData". You can load a workspace simply using load().
If you're loading a pre-existing workspace and you don't want that to happen, rename or delete the .RData file in the current working directory.
If you want to have different projects with different workspaces, the easiest thing to do is create multiple directories.
There is no connection between sessions, objects and controlling files .R. In short: no need to.
You may enjoy walking through the worked example at the end of the Introduction to R - A Sample Session.
Fire up R in your preferred environment and execute the commands one-by-one.