How can I run multiple lines of code in R - r

I have just switched from windows 7 to windows 10 on my pc.
When I was still using windows 7, using the combination CTRL+R or CTRL+ENTER would run the line of code that I was in. Moreover, if the code continued on one or more lines below or started above my current line, it would run the entire section without me having to select it.
After switching to windows 10, the same combinations will only run the line of code that I am currently in, or the piece of code that is selected by me. To give an example:
#Tryout
for(i in 1:3){
print(i)
}
This code would normally run at once without having to select it, even when I would start in the first line (#Tryout). Now, if I don't select, I will need to use CTRL+R or CTRL+ENTER three times to go through this code and I have to start in the correct line. Starting in the line #Tryout will not run any part of the code but will only result in the line #Tryout being shown in the console.
I'm not good with computers (in your answers please pretend to be adressing a five-year-old) so I had one of my colleagues look at it who's our expert on R. Here are the findings:
The problem occurs in both RStudio as the standalone version of R.
I'm using R version 3.3.2, the same as before the windows update. Switching to version 3.5 didn't solve the problem.
I have other colleagues also using R 3.3 in combination with windows 10 for whom this problem does not occur.
Going to Tools-Global Options-Code and checking the box of 'Focus console after executing from source' doesn't help
When we went to 'Modify Keyboard Shortcuts', the name attached to the shortcut (CTRL+R or CTRL+ENTER) was the same as it was for other colleagues for which the function does run all lines in a command: 'Run Current Line or Selection'
The problem is not preventing me from using R, but it is tedious and I hope someone can help me to solve it.
Thanks so much for reading!

Click on header Tools, then Global Options..., then Code, then Ctrl + Enter Executes and choose Multi-line R statement

#M Waz & #Just Burfi: I know I can select the code and then run it, that works fine. But I don't want to have to manually select the code all the time.
#Clemsang: your answer puzzled me for a moment because I didn't have the CTRL + Enter Executes that you were referring to. I went back to my colleague who had the bright idea to check the version of RStudio that I was using.
As it turns out, I was using an old version (0.99.903). Now that I've installed a newer version (1.1.463), running the code works as before! I also have the CTRL + Enter Executes now.

Related

R studio console suddenly does not show output

here are my console output examples
as you see, there are no output values when using r studio console.
Actually, there are many related issues about this, but no clear solutions. Only a temporal or Adhoc solution like: restart R or using r notebook script.
Anyway, this phenomenon happens just 1 day ago, with the same code, same operations.
At the first time, console works and a few minutes later it doesn't work.
It is so annoying me to restart or run r notebook script...
Is anybody have the same issues as me?
(I cannot give reproducible data, because it works well the other's computer)
Click on the gear icon beside knit and make sure that "chunk output in console" is enabled.

Output/the next command prompt overwrites long command in R

I'm seeing a very strange issue with R (v 3.3.2, running on the command line of a CentOS 7 linux box). If I execute a command that goes over one line in the terminal, the output appears at the beginning of the second line of the command. This didn't happen with previous versions of R, though it does happen with later versions I've installed. I am using Putty as the terminal, but it also happens if I use xterm.
To describe it better, it looks like this:
> tmpvaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaal=1 [before hitting enter]
> tmpvaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
> aaaaaaaaaaaaaaaal=1 [after enter, typing overwrites the a's now]
If the multiline command outputs something, that output occurs on the second line and overwrites the a's. If there is an error, then the error message terminates properly and the next prompt follows the error message. So does anyone have any ideas? Thanks in advance!
Update: After some more experimenting, I've found another odd behavior. If I use CTRL-R to search for a previous multiline command, and then execute it, the output or subsequent prompt appears at the same location in the command as where the cursor was. Here's another example:
(reverse-i-search)`1':tmpvaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaal=1[cursor on one before hitting enter]
[hit enter and then:]
>tmpvaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaal=1
aaaaaaaaal=>
Pretty strange. Hard to describe so its hard to find any evidence of other problems like this on stack-exchange or elsewhere. My feeling is it has to do with the readline library but it is strange because this doesn't happen in the shell command line, only in R as far as I can tell.
Update 2: I've found a potentially more revealing way to replicate this issue. If you manually add a bunch of newlines (by jamming CTRL-V CTRL-J repeatedly), then hit enter, the next prompt jumps right back up to underneath the last one. This is not what happens in the underlying shell (bash for me), or in previous versions of R that I can check.
Just to have the answer out there in case anyone else has this issue, the problem was that my system was using an old version of the readline library, 6.2, and the issue disappeared when updating it to the current version, 7.0. So it would seem that even though later versions of R will install with the outdated readline, they don't exactly work correctly.

Shortcut control enter does not work in R script

ctrl+R no longer works for executing script lines.
This is not a hardware/keyboard problem.
I have also restarted my PC.
I have tried on a different PC.
I have recently switched from using R to using RStudio. I thought this may have something to do with it, so I opened and resaved the script in RStudio, to no effect.
Furthermore, I have created an R-Project folder and have copied the files, including the script in question, into it. Then I started R-Studio and opened the project.
I would like to post my sessionInfo(), but do not know how to do that without executing the command.
Keep in mind that I only use R for stats purposes. I don't know much about informatics or other types of programming etc., so please try to keep it simple for me. Thanks!
In addition to the solution offered above, in Rstudio, Ctrl + Enter does not work if the chunk is broken in .Rmd files.
For example, if you press CTRL + Enter on the following line (2+2), it won't work:
```{r}
2+2
``
The chunk should end three Backtick characters, not two.
The problem was that the script file (for some reason unkown to me) did not have the correct extension (.R). When I added that to the script file extension, it worked fine again.

RStudio does not display any output in console after entering code

The problem is that when I run the code, there's no return in the console; I mean it does run the code, but does not return any output.
For example, if I write
v <- c(1, 2, 3, 4, 5)
v
I would expect in return
[1] 1 2 3 4 5
But it's not working.
I have version RStudio Version 0.98.1079 and R Version 3.1.1
Possibility 1 (until the + sign was mentioned): I was wondering if you had been doing a tutorial where they were demonstrating the sink function and you hadn't gotten to the point where it was reversed.
> sink('out.txt') # diverts all output to a disk file
> v <- c(1,2)
> v # output went to file
> sink() # sets the output back to the console
> v
[1] 1 2
Another way would be to call closeAllConnections:
> sink('out.txt')
> v
> v
> closeAllConnections()
> v
[1] 1 2
Possibility 2: To address the lack of response with a "+" showing at the Rstudio console ... that is a sign that the R parser "thinks" the entered text has not completed a full R command. It may indicate that you haven't typed a closing bracket or parenthesis. If typing one or two of those is unsuccessful and you keep getting mor +'s then you may be successful with typing the [esc]-key. If it is showing up immediately after a restart then you should check your code for correctness and make sure that the .Rdata file is deleted from your working directory. If you don't know what that means then you may need to search for the methods appropriate to your operating system. You could also have an error in the code of one of your .rprofile files.
In any case these two possibilities have nothing to do with Rstudio per se and everything to to with the typical behavior of an R console session in pretty much any IDE.
Do the lines still start with a "+"? It is also possible you forgot to close the brackets of a function. Try "}".
I had the same issue and none of the tips mentioned here were working.
Session > Restart R did the trick for me, possibly suggesting that I had a similar problem as andrewH but was not patient enough to wait for R to behave again.
This is a very old question, but I just had the same problem with a different cause, so I thought I would describe it here case it should be useful to someone else. I was getting the regular command prompt, with nothing more, no matter what I typed at the command line. I tried multiple returns, escape, sink, traceback, closeAllConnections (which did give me a response, "error: unexpected ) in (), but then went back to the command prompt and ignored a second traceback).
Anyway after half an hour or so of pulling my hair out, up pops "View(Mid2)". Mid2 is a tibble with 8.5 million observations of 88 numeric variables. I must have tapped it in the environment pane accidentally. I suppose it just took that long for the viewer to render it. I assume that all the other things I did hit at once, because RStudio crashed immediately thereafter.
The interesting thing about this particular version of the problem is what didn't happen. The red stop sign in the upper right of the console window, that lights when R is busy, didn't light. That is unfortunate -- but understandable, if the RStudio viewer is a different process. But also, when my computer is working hard on a really big computation or IO task, the fan usually starts, but it didn't. Don't know why. . I took its absence, incorrectly, to mean no such computation was underway.
If the lines in console are starting with "+".
Save your work and close the 'RStudio' or other tool which you are using and Start it again, it worked for me.
If you are using R Studio Cloud, refresh or re-opening won't work.
Only clue from the above posts or answers is your console will always start with '+'
In my case I tried all possibilities of closing braces.
And ")" worked for me when I typed that into the console and press enter.
sink() function did nothing in R Studio Cloud
A simple mistake might have also caused this problem:
A rather lengthy command left abandoned in the console is blocking the appearance of the result line.
Thus, the console only shows that line, but the result from any code run from the source, will not appear.
To solve this, just switch to the console, remove any remaining command and try again.
Experiencing something like that explained here as an unresponsive console to the R-Code running was just devastating for me when I experienced it. But luckly although I tried every trick explained in this page, it did not work for me. At last I clicked on the "To console" option available just below the Environment, History, Connections, Tutorial Tab on the R Studio. It solved the puzzle for me just now.
The best solution I've found is closeAllConnections and/or sink which almost always work
But as a stop gap measure, View()'ing always works. It's sort of a pain but whatever you wanted to print out, surround by View and you can see it

Is there a hack to be able to run the current line or selection in RStudio without moving the cursor?

UPDATE (April 2013): As per answer below, RStudio no longer jumps cursor on selection.
I'm running RStudio 0.97.168.
I like to use the script editor in RStudio like a console. Thus, I run a line of code and then edit it a little bit and re-run it. I often also explore objects by selecting some of the code and running the selection and then progressively altering the selection. At present RStudio always moves the cursor after running a line of code. The cursor can move to a variety of places. Typically the cursor moves to the next line of R code, but depending on the context, it could move to the end of the code block or the next line. It's really frustrating having to constantly move the cursor back to where I want it.
While I often appreciate the default cursor movement behaviour, I'd like to have the option to run the selection or the current line without the cursor moving.
I've raised this as a suggestion on RStudio support.
I'd like to be able to have a shortcut key like "Cmd+Alt+Enter" that runs the current line or selection and does not move the cursor in the script editor.
I realise that this is not currently supported, but I was wondering whether there might be some creative hack that could enable the cursor not to move after running a command or even a patch or perhaps some sort of external macro.
For anyone who ends up here in 2020:
Ctrl(or Cmd) + Enter: Will run current line and jump to the next one. If a code portion is selected, run the selected code without jumping further.
Alt + Enter: – Will run the current line of code without moving the cursor to the next line, useful if you want to run it multiple times.
(Source)
For this kind of flexibility, I suggest you use the editor Sublime Text 2, add in the package installer by Will Bond and then install the SublimeREPL package which will allow you to use an R interpreter within ST2 (or BASH prompt, Python / Ruby / whatever interpeter, concurrently if you wish).
You can then alternate between your code and the interpreter without lifting your fingers from the keyboard and your cursor will be at the same point every time when you want to switch back.
Sublime Text will also allow you to write a custom keybinding to automate this task.
I cannot recommend using Sublime Text 2 highly enough when coding for R. You can even pass files directly from ST2 into RStudio very easily if you like using the plot panes (very easy to do with the SidebarEnhancements package in ST2).
RStudio is awesome for many things -- especially now with Knitr, builds etc etc. But ST2 with an R REPL is many orders of magnitude more powerful for general code writing / editing than RStudio.
Sorry it's not RStudio specific, but it is a nice workaround!
I updated to version 0.98.83 of RStudio using the daily build section.
It appears that at some point in recent versions of RStudio, the cursor no longer jumps when code is run from a selection in the script window.
That's great news.

Resources