Lists containing reactive items not fully generating in shiny - r

I fixed a bug, but I do not understand why it happened in the first place. Can anyone help clarify?
I am building an interactive data explorer app, with each figure contained in its own module. Under my first approach ("old version that does not work") I first build a look-up list and then use it to display the correct control and plot.
However, no plot is displayed until you have clicked on all the options in the figure selection list.
I fixed this by switching to the "new version that works" without an intermediate look-up list. But do not understand why this happened.
Minimal reproducible example below, sorry about the length.
# required packages
library(shiny)
library(tidyverse)
## ui ----
ui = fluidPage(
sidebarLayout(
sidebarPanel(
uiOutput("plot_controls"),
width=3
),
mainPanel(
selectInput("selected_plot", "Select figure:", choices = c("Histogram", "Scatter")),
plotOutput("plot_plot", height = "700px"),
width=9
)))
## server ----
server = function(input, output, session) {
data(starwars)
### modules ----
fig_histogram = callModule(figure_histogram_plot, "histogram", datafile = starwars)
fig_scatter = callModule(figure_Scatter_Plot, "scatter", datafile = starwars)
module_list = list( fig_histogram, fig_scatter )
### old version that does not work ----
resource.map_text_to_plot = reactive({
map = list("Histogram" = module_list[[1]]$plot(), "Scatter" = module_list[[2]]$plot())
})
output$plot_plot = renderPlot({ resource.map_text_to_plot()[input$selected_plot] })
resource.map_text_to_control = reactive({
map = list("Histogram" = module_list[[1]]$control, "Scatter" = module_list[[2]]$control)
})
output$plot_controls = renderUI({ resource.map_text_to_control()[input$selected_plot] })
### new version that works ----
# output$plot_controls = renderUI({
# for(module in module_list)
# if(module$text == input$selected_plot)
# return(module$control)
# })
#
# output$plot_plot = renderPlot({
# for(module in module_list)
# if(module$text == input$selected_plot)
# return(module$plot())
# })
}
shinyApp(ui = ui, server = server)
The figure modules are as follows:
### histogram - server ----
figure_histogram_plot = function(input, output, session, datafile){
text = "Histogram"
control = sliderInput(session$ns("num_bins"), "Number of bins", min = 5, max = 50, value = 30)
plot = reactive({
p = ggplot(data = datafile) + geom_histogram(aes_string(x = "height"), bins = input$num_bins)
return(p)
})
return(list(text = text, plot = plot, control = control))
}
### scatter - server ----
figure_Scatter_Plot = function(input, output, session, datafile){
text = "Scatter"
control = radioButtons(session$ns("plot_design"), "Plot design", choices = c("points", "lines", "both"))
plot = reactive({
p = ggplot(data = datafile)
if(input$plot_design != "lines")
p = p + geom_point(aes_string( x = "mass", y = "height" ))
if(input$plot_design != "points")
p = p + geom_line(aes_string( x = "mass", y = "height" ))
return(p)
})
return(list(text = text, plot = plot, control = control))
}

So I think the problem is when exactly you are evaluating the reactive element. When you use () to "call" a reactive element, it's not really reactive any more. When you set up the list, use
resource.map_text_to_plot = reactive({
map = list("Histogram" = module_list[[1]]$plot,
"Scatter" = module_list[[2]]$plot)
map
})
and when you set up the renderPlot, use
output$plot_plot = renderPlot({
resource.map_text_to_plot()[[input$selected_plot]]() })
Note we removed the () from the list, and put it in the render function instead.
Also, your controls aren't being initialized before the first plot is drawn, so the input$plot_design value can be NULL and you don't seem to check for that which causes a problem at the first draw (you will briefly see an error most likely)

Related

Using a dynamic UI to draw a 3d plot in shiny

I have a dataframe:
df1<-data.frame(a=rnorm(100),b=rnorm(100),c=rnorm(100),ID1=c("A","B"),ID2=(c("A","B","C","D")))
I am drawing a 3d plot with plotly by adding add_trace in a loop, like:
library(shiny)
library(plotly)
library(tidyverse)
df1<-data.frame(a=rnorm(100),b=rnorm(100),c=rnorm(100),ID1=c("A","B"),ID2=(c("A","B","C","D")))
test<-unique(df1$ID2)
tempt.col<-c("red","blue","green","yellow")
p<-plot_ly()
for(i in 1:length(test)){
df2<-df1[df1$ID2==test[i],] %>%
select(a,b,c)
p<-add_trace(p=p,
data = df2,
x=~a,y=~b,z=~c,
type="scatter3d",
marker = list(size=5,color=tempt.col[i]),
mode="markers"
)
}
p
It works very well like:
Now I want to achieve this in shiny, I would like to generate colourInput based on the length of the selected ID, the ui:
ui<-fluidPage(
fluidRow(
sidebarPanel(
selectInput("select1","Select the ID",choices = colnames(df1[,4:5]),multiple = FALSE),
actionButton("act1","Go"),
uiOutput("ui1"),
),
mainPanel(
tableOutput("table1"),
plotlyOutput("plot.3d",height = "1000px")
)
)
)
server:
server<-function(input,output){
tempt.group<-reactive({
unique(df1[,input$select1])
})
observeEvent(input$act1,{
tempt.vector<-list()
tempt.col.name<-isolate(
vector(mode = "list",length = 2)
)
for(i in 1:length(tempt.group())){
tempt.vector[[i]]<-colourpicker::colourInput(
inputId = paste0("ColorID",i),
label = tempt.group()[i])
tempt.col.name[[1]][i]<-paste0("ColorID",i)
tempt.col.name[[2]][i]<-tempt.group()[i]
}
output$ui1<-renderUI({
tempt.vector
})
names(tempt.col.name)<-c("inputId","label")
col.name<-reactive({
data.frame(sapply(tempt.col.name,cbind))
})
col.df<-reactive({
tempt.col.df<-reactiveValuesToList(input)
data.frame(
names = names(tempt.col.df[grepl("ColorID", names(tempt.col.df))]),
values = unlist(tempt.col.df[grepl("ColorID", names(tempt.col.df))], use.names = FALSE)
)
})
group.col.df<-reactive({
merge(col.df(),col.name(),by.x="names",by.y="inputId")
})
output$table1<-renderTable(
group.col.df()
)
pp<-reactive({
p<-plot_ly()
for(i in 1:length(tempt.group())){
# col<-group.col.df()[group.col.df()[,"label"]==tempt.group()[i],"values"] ####it should be something wrong with here
df2<-df1[df1$ID==tempt.group()[i],] %>%
select(a,b,c)
p<-add_trace(p=p,
data = df2,
x=~a,y=~b,z=~c,
type="scatter3d",
# marker = list(size=5,color=col[i]), ####it should be something wrong with here
mode="markers"
)
}
p
})
output$plot.3d<-renderPlotly({
pp()
})
})
}
shinyApp(ui=ui,server=server)
The app is like:
I want to fetch the colourInput and pass to the color of the 3d scatter plot, but nothing works. The page either keeps refreshing or frozen,
That must be something wrong with col<-group.col.df()[group.col.df()[,"label"]==tempt.group()[i],"values"] and marker = list(size=5,color=col[i]),
please help.
The below works as intended.
library(shiny)
library(plotly)
df1<-data.frame(a=rnorm(100),b=rnorm(100),c=rnorm(100),ID1=c("A","B"),ID2=(c("A","B","C","D")))
# Define UI
ui<-fluidPage(
fluidRow(
sidebarPanel(
selectInput("select1","Select the ID",choices = colnames(df1[,4:5]),multiple = FALSE),
# actionButton("act1","Go"),
uiOutput("myui"),
# keep track of the last selection on all selectInput created dynamically
),
mainPanel(
#tableOutput("table1"),
plotlyOutput("plot.3d",height = "1000px")
)
)
)
# Define server logic required to draw a histogram
server<-function(input,output){
rv <- reactiveValues(mygroup=0, uitaglist = list(), uilabels = list(), input_subset = list(), plotly=NULL)
observeEvent(input$select1, {
newgroup <- unique(df1[,input$select1])
rv$mygroup <- newgroup
# ui tags
rv$uitaglist <- list()
for(i in 1:length(rv$mygroup)){
rv$uitaglist[[i]]<-colourpicker::colourInput(
inputId = paste0("ColorID",i),
label = rv$mygroup[i])
rv$uilabels[[i]] <- paste0("ColorID",i)
}
})
output$myui <- renderUI({
rv$input_subset <- rv$uitaglist
})
observe({
rv$input_subset <- lapply(rv$uilabels, function(x) input[[x]])
p<-plot_ly()
for(i in 1:length(rv$mygroup)) {
df2<-df1[df1$ID2 == rv$mygroup[i],] %>% select(a,b,c)
p<-add_trace(p=p,
data = df2,
x=~a,y=~b,z=~c,
type="scatter3d",
marker = list(size=5,color=rv$input_subset[[i]]),
mode="markers"
)
}
rv$plotly <- p
})
output$plot.3d<-renderPlotly({
rv$plotly
})
} # end server
# Run the application
shinyApp(ui = ui, server = server)
The main difficulty was to observe all your dynamically-generated UI inputs at once. Turns out it could be done using observe and lapply.
Observing several inputs is problematic because the error Must use single string to index into reactivevalues is returned by trying to index input by a vector or list.
Now, Why this can't be done out-of-the-box is a good question.

Saving ggplot from Shiny gives blank png file

I am trying to save a ggplot2 object made in a shiny app. Basically this code allows .xlsx files to be uploaded and plots created after selecting from some options. I have then included a download button so that the user may download the plot they have created. I am using downloadHandler() and grDevices::png(). Pressing the button does cause a .png file to be downloaded, but when I open it, it is just a blank, white square. I am so close! Any help would be much appreciated. Thank you.
#initialize
library(shiny)
library(ggplot2)
library(purrr)
library(dplyr)
library(plotly)
#example data
data(iris)
#make some factors
#easier to let ggplot2 control plotting (color, fill) based on type
data(mtcars)
uvals<-sapply(mtcars,function(x){length(unique(x))})
mtcars<-map_if(mtcars,uvals<4,as.factor) %>%
as.data.frame()
#plotting theme for ggplot2
.theme<- theme(
axis.line = element_line(colour = 'gray', size = .75),
panel.background = element_blank(),
plot.background = element_blank()
)
# UI for app
ui<-(pageWithSidebar(
# title
headerPanel("Select Options"),
#input
sidebarPanel
(
# Input: Select a file ----
fileInput("file1", "Choose xlsx File",
multiple = TRUE,
accept = c(".xlsx")),
# Horizontal line ----
tags$hr(),
#download button
fluidPage(downloadButton('down')),
# Input: Select what to display
selectInput("dataset","Data:",
choices =list(iris = "iris", mtcars = "mtcars",
uploaded_file = "inFile"), selected=NULL),
selectInput("xaxis","X axis:", choices = NULL),
selectInput("yaxis","Y axis:", choices = NULL),
selectInput("fill","Fill:", choices = NULL),
selectInput("group","Group:", choices = NULL),
selectInput("plot.type","Plot Type:",
list(boxplot = "boxplot", histogram = "histogram", density = "density", bar = "bar")
),
checkboxInput("show.points", "show points", TRUE)
),
# output
mainPanel(
h3(textOutput("caption")),
#h3(htmlOutput("caption")),
uiOutput("plot") # depends on input
)
))
# shiny server side code for each call
server<-function(input, output, session){
#update group and
#variables based on the data
observe({
#browser()
if(!exists(input$dataset)) return() #make sure upload exists
var.opts<-colnames(get(input$dataset))
updateSelectInput(session, "xaxis", choices = var.opts)
updateSelectInput(session, "yaxis", choices = var.opts)
updateSelectInput(session, "fill", choices = var.opts)
updateSelectInput(session, "group", choices = var.opts)
})
output$caption<-renderText({
switch(input$plot.type,
"boxplot" = "Boxplot",
"histogram" = "Histogram",
"density" = "Density plot",
"bar" = "Bar graph")
})
output$plot <- renderUI({
plotOutput("p")
})
#get data object
get_data<-reactive({
if(!exists(input$dataset)) return() # if no upload
check<-function(x){is.null(x) || x==""}
if(check(input$dataset)) return()
obj<-list(data=get(input$dataset),
yaxis=input$yaxis,
xaxis=input$xaxis,
fill=input$fill,
group=input$group
)
#require all to be set to proceed
if(any(sapply(obj,check))) return()
#make sure choices had a chance to update
check<-function(obj){
!all(c(obj$yaxis,obj$xaxis, obj$fill,obj$group) %in% colnames(obj$data))
}
if(check(obj)) return()
obj
})
#plotting function using ggplot2
output$p <- renderPlot({
plot.obj<-get_data()
#conditions for plotting
if(is.null(plot.obj)) return()
#make sure variable and group have loaded
if(plot.obj$yaxis == "" | plot.obj$xaxis =="" | plot.obj$fill ==""| plot.obj$group =="") return()
#plot types
plot.type<-switch(input$plot.type,
"boxplot" = geom_boxplot(),
"histogram" = geom_histogram(alpha=0.5,position="identity"),
"density" = geom_density(alpha=.75),
"bar" = geom_bar(position="dodge")
)
if(input$plot.type=="boxplot") { #control for 1D or 2D graphs
p<-ggplot(plot.obj$data,
aes_string(
x = plot.obj$xaxis,
y = plot.obj$yaxis,
fill = plot.obj$fill,# let type determine plotting
group = plot.obj$group
)
) + plot.type
if(input$show.points==TRUE)
{
p<-p+ geom_point(color='black',alpha=0.5, position = 'jitter')
}
} else {
p<-ggplot(plot.obj$data,
aes_string(
x = plot.obj$xaxis,
fill = plot.obj$fill,
group = plot.obj$group
#color = as.factor(plot.obj$group)
)
) + plot.type
}
p<-p+labs(
fill = input$fill,
x = "",
y = input$yaxis
) +
.theme
print(p)
})
# set uploaded file
upload_data<-reactive({
inFile <- input$file1
if (is.null(inFile))
return(NULL)
#could also store in a reactiveValues
read_excel(inFile$datapath)
})
observeEvent(input$file1,{
inFile<<-upload_data()
})
# downloadHandler contains 2 arguments as functions, namely filename, content
output$down <- downloadHandler(
filename = function() {
paste(input$dataset,"png" , sep=".")
},
# content is a function with argument file. content writes the plot to the device
content = function(file) {
png(file) # open the png device
p # for GGPLOT
dev.off() # turn the device off
}
)
}
# Create Shiny app ----
shinyApp(ui, server)
I responded as a comment, but I recognize it's a little hard to follow, so I'll post the full revised code to make it clearer.
I generally recommend to not do too much within render*() calls. Rather, set up the object you're looking to create in a separate reactive() object, and just refer to that in renderPlot(). In the code below, I moved all your code that creates the plot into a reactive object named p, and then I can refer to it in ggsave() for the downloading.
#initialize
library(shiny)
library(ggplot2)
library(purrr)
library(dplyr)
library(plotly)
#example data
data(iris)
#make some factors
#easier to let ggplot2 control plotting (color, fill) based on type
data(mtcars)
uvals<-sapply(mtcars,function(x){length(unique(x))})
mtcars<-map_if(mtcars,uvals<4,as.factor) %>%
as.data.frame()
#plotting theme for ggplot2
.theme<- theme(
axis.line = element_line(colour = 'gray', size = .75),
panel.background = element_blank(),
plot.background = element_blank()
)
# UI for app
ui<-(pageWithSidebar(
# title
headerPanel("Select Options"),
#input
sidebarPanel
(
# Input: Select a file ----
fileInput("file1", "Choose xlsx File",
multiple = TRUE,
accept = c(".xlsx")),
# Horizontal line ----
tags$hr(),
#download button
fluidPage(downloadButton('down')),
# Input: Select what to display
selectInput("dataset","Data:",
choices =list(iris = "iris", mtcars = "mtcars",
uploaded_file = "inFile"), selected=NULL),
selectInput("xaxis","X axis:", choices = NULL),
selectInput("yaxis","Y axis:", choices = NULL),
selectInput("fill","Fill:", choices = NULL),
selectInput("group","Group:", choices = NULL),
selectInput("plot.type","Plot Type:",
list(boxplot = "boxplot", histogram = "histogram", density = "density", bar = "bar")
),
checkboxInput("show.points", "show points", TRUE)
),
# output
mainPanel(
h3(textOutput("caption")),
#h3(htmlOutput("caption")),
uiOutput("plot") # depends on input
)
))
# shiny server side code for each call
server<-function(input, output, session){
#update group and
#variables based on the data
observe({
#browser()
if(!exists(input$dataset)) return() #make sure upload exists
var.opts<-colnames(get(input$dataset))
updateSelectInput(session, "xaxis", choices = var.opts)
updateSelectInput(session, "yaxis", choices = var.opts)
updateSelectInput(session, "fill", choices = var.opts)
updateSelectInput(session, "group", choices = var.opts)
})
output$caption<-renderText({
switch(input$plot.type,
"boxplot" = "Boxplot",
"histogram" = "Histogram",
"density" = "Density plot",
"bar" = "Bar graph")
})
output$plot <- renderUI({
plotOutput("p")
})
#get data object
get_data<-reactive({
if(!exists(input$dataset)) return() # if no upload
check<-function(x){is.null(x) || x==""}
if(check(input$dataset)) return()
obj<-list(data=get(input$dataset),
yaxis=input$yaxis,
xaxis=input$xaxis,
fill=input$fill,
group=input$group
)
#require all to be set to proceed
if(any(sapply(obj,check))) return()
#make sure choices had a chance to update
check<-function(obj){
!all(c(obj$yaxis,obj$xaxis, obj$fill,obj$group) %in% colnames(obj$data))
}
if(check(obj)) return()
obj
})
p <- reactive({
plot.obj<-get_data()
#conditions for plotting
if(is.null(plot.obj)) return()
#make sure variable and group have loaded
if(plot.obj$yaxis == "" | plot.obj$xaxis =="" | plot.obj$fill ==""| plot.obj$group =="") return()
#plot types
plot.type<-switch(input$plot.type,
"boxplot" = geom_boxplot(),
"histogram" = geom_histogram(alpha=0.5,position="identity"),
"density" = geom_density(alpha=.75),
"bar" = geom_bar(position="dodge")
)
if(input$plot.type=="boxplot") { #control for 1D or 2D graphs
p<-ggplot(plot.obj$data,
aes_string(
x = plot.obj$xaxis,
y = plot.obj$yaxis,
fill = plot.obj$fill,# let type determine plotting
group = plot.obj$group
)
) + plot.type
if(input$show.points==TRUE)
{
p<-p+ geom_point(color='black',alpha=0.5, position = 'jitter')
}
} else {
p<-ggplot(plot.obj$data,
aes_string(
x = plot.obj$xaxis,
fill = plot.obj$fill,
group = plot.obj$group
#color = as.factor(plot.obj$group)
)
) + plot.type
}
p<-p+labs(
fill = input$fill,
x = "",
y = input$yaxis
) +
.theme
print(p)
})
#plotting function using ggplot2
output$p <- renderPlot({
p()
})
# set uploaded file
upload_data<-reactive({
inFile <- input$file1
if (is.null(inFile))
return(NULL)
#could also store in a reactiveValues
read_excel(inFile$datapath)
})
observeEvent(input$file1,{
inFile<<-upload_data()
})
# downloadHandler contains 2 arguments as functions, namely filename, content
output$down <- downloadHandler(
filename = function() {
paste(input$dataset,"png" , sep=".")
},
# content is a function with argument file. content writes the plot to the device
content = function(file) {
ggsave(file, p())
}
)
}
# Create Shiny app ----
shinyApp(ui, server)

Shiny: Plotting a graph whose name contains an interactive input value

In ShinyApp, I want to plot a graph whose name has an interactive input value. So in the ui.R side, the user chooses an input value from 0, 1 or 2. And in the server.R side, I want the App to plot a graph whose name is either pl0, pl1 or pl2. That is to say, if the user chooses 0 as an input value, the App plots a graph pl0, so does the same for pl1 for input 1, and for pl2 and input 2. I am using plotly library for plotting graphs.
I have tried print(), plot(), return(), but neither of them worked.
Any solution or advice would be appreciated. Thank you very much!
Here is my ui.R
library(shiny)
shinyUI(fluidPage(
# Application title
titlePanel("Star Cluster Simulations"),
# Sidebar with a slider input for time
sidebarLayout(
sidebarPanel(
sliderInput(inputId = "time",
label = "Select time to display a snapshot",
min = 0,
max = 2,
value = 0)
),
# Show a plot of the generated distribution
mainPanel(
plotlyOutput("distPlot")
)
)
))
And here is my server.R
library(shiny)
library(plotly)
# load data
for(i in 0:2) {
infile <- paste0("Data/c_0", i, "00.csv")
a <- read.csv(infile)
b <- assign(paste0("c_0", i, "00"), a)
names(a) <- paste0("c_0", i, "00")
pl <- plot_ly(b, x = ~x, y = ~y, z = ~z, color = ~id) %>%
add_markers() %>%
layout(scene = list(xaxis = list(title = 'x'),
yaxis = list(title = 'y'),
zaxis = list(title = 'z')))
assign(paste0("pl", i), pl)
}
# shinyServer
shinyServer(function(input, output) {
output$distPlot <- renderPlotly({
# this doesn't work
print(paste0("pl", input$time))
})
})
I can't test this since your question isn't reproducible (i.e. doesn't include data), but one way to switch between text values (i.e. the values returned from Shiny inputs) and R objects is by making a reactive expression that uses the switch function. You can call the reactive expression (in the case below, plot.data()) inside renderPlotly (or any other render function) to switch between datasets.
shinyServer(function(input, output) {
plot.data <- reactive({
switch(paste0("pl", input$time),
"pl0" = pl0,
"pl1" = pl1,
"pl2" = pl2)
})
output$distPlot <- renderPlotly({
plot.data()
})
})

shiny plotly no graph

I'm switching to plotly from ggplot for my shiny app, but when I run app from Rstudio the plots are not showing in browser, if I use print(gg) the plotly shows correctly in Rstudio viewer. The following minimal example works if I switch back to ggplot. Thanks!
ui.R
library(shiny)
library(httr)
library(jsonlite)
# get the list of all packages on CRAN
package_names = names(httr::content(httr::GET("http://crandb.r-
pkg.org/-/desc")))
shinyUI(fluidPage(
# Application title
"R Package Downloads",
# Sidebar with a slider input for number of bins
sidebarLayout(
sidebarPanel(
br(),
selectInput("package",
label = "Packages",
selected = "ggplot2", # initialize the graph with a random package
choices = package_names,
multiple = TRUE),
selectInput("plot1",
label = "Select Plot Type",
choices = c("","Downloads vs Time (monthly)","Downloads vs Time (cumulative)","Map (cumulative)","Map (dominance)"),
multiple = FALSE)),
# Show a plot of the generated distribution
mainPanel(
plotlyOutput("plot1")
))
))
server.R
library(shiny,quietly = T); library(stringr,quietly = T)
library(dplyr,quietly = T); library(plotly,quietly = T)
library(ggplot2,quietly = T); library(lubridate,quietly = T)
library(cranlogs,quietly = T); library(zoo,quietly = T)
library(scales,quietly = T); library(broom,quietly = T)
library(rworldmap,quietly = T); library(countrycode,quietly = T)
library(data.table,quietly = T)
shinyServer(function(input, output) {
load("CRANlog_cleaned_month.RData")
output$plot1 <- renderPlotly({
dat.p <<- subset(dat,package %in% input$package)
dat.ts <<- aggregate(times~package+month,data=dat.p,sum)
DTmonthly <<- ggplot(dat.ts, aes(month, times, color = package)) +
geom_line() + xlab("Date") + scale_y_continuous(name="Number of downloads", labels = comma)
gg <- ggplotly(DTmonthly)
gg
})
})
I managed to solve this by changing the name of selectInput from "plot1" to another name, might be because of the plotlyOutput is also using "plot1". This was fine if I just use plotOutput. Probably due to some error checking code is missing in plotlyOutput.

Shiny app not reacting to changes in a Biostrings::DNAString object

I'm working on a shiny app that accepts a DNA sequence (e.g. "ACTGACTG"), does some calculations and plots the result when a button is clicked. When I store a Biostrings::DNAString in a reactiveValues object, my shiny app only reacts to changes if the number of characters of the sequence changes, e.g. if "AA" is entered first, the plot doesn't change if "CC" is then entered but does change if "AAAA" is entered. It responds to all changes if I store the object as a character. Here's a simplified example:
library(shiny)
library(shinyBS)
library(Biostrings)
library(ggplot2)
ui <- fluidPage(
sidebarLayout(
sidebarPanel(
ref_seqs <- textInput("ref_seqs", "Sequence", width = "100%",
value = NULL, placeholder = "ATGCTGCTGGTTATTAGATTAGT"),
run_guide <- bsButton("run", 'Run', type = "action",
style = "success", block = TRUE)
),
mainPanel(
plotOutput("reference")
)
)
)
server <- function(input, output) {
ref <- reactiveValues(sq = NULL)
dat <- reactive({
req(input$run)
chrs <- strsplit(as.character(ref$sq),"")[[1]]
data.frame(label = chrs, x = seq_along(chrs))
})
observeEvent(input$run, {
ref$sq <- Biostrings::DNAString(input$ref_seqs)
#ref$sq <- input$ref_seqs
})
output$reference <- renderPlot({
ggplot(dat(), aes(x = x, y = factor(1), label = label)) + geom_text(size = 12)
})
}
shinyApp(ui = ui, server = server)
If I comment out the line ref$sq <- Biostrings::DNAString(input$ref_seqs) and uncomment the line below it, the plot updates upon changes.
Can anyone explain why this happens? Do reactiveValues only work with base types? Thanks!

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