iprof and iprof_totals profiling error - openmdao

I get this error after trying :
openmdao iprof x.py
or
openmdao iprof_totals x.py
on my terminal. Any idea why it could be? Do we have a simple sample code where the iprof works smoothly.
Traceback (most recent call last):
File "/home/user/miniconda3/bin/openmdao", line 11, in
sys.exit(openmdao_cmd())
File "/home/user/miniconda3/lib/python3.6/site-packages/openmdao/utils/om.py", line 403, in openmdao_cmd
options.executor(options)
File "/home/user/miniconda3/lib/python3.6/site-packages/openmdao/devtools/iprofile.py", line 373, in _iprof_totals_exec
_iprof_py_file(options)
File "/home/user/miniconda3/lib/python3.6/site-packages/openmdao/devtools/iprofile.py", line 429, in _iprof_py_file
_finalize_profile()
File "/home/user/miniconda3/lib/python3.6/site-packages/openmdao/devtools/iprofile.py", line 183, in _finalize_profile
qfile, qclass, qname = find_qualified_name(filename, int(line), cache, full=False)
File "/home/user/miniconda3/lib/python3.6/site-packages/openmdao/devtools/iprof_utils.py", line 73, in find_qualified_name
with open(filename, 'Ur') as f:
FileNotFoundError: [Errno 2] No such file or directory: 'packages/openmdao/jacobians/jacobian.py'

I looked into this and there is currently a bug when using 'openmdao iprof' and 'openmdao iprof_totals' on a version of OpenMDAO that was not installed from an OpenMDAO repository using 'pip install -e'. I put a story in our bug tracker to fix it.

Related

Script compiled with pyinstaller is missing a .dll file, when the file is manually copied in the program's folder it just dies

I have a python script which is basically a graphic interface (pysimpleguy) to a mysql database.
I am working in python 3.8; my dependencies are:
PySimpleGUI 4.55.1
sqlalchemy 1.3.20
pymysql 1.0.2
pandas 1.1.3
regex 2020.10.15
pillow 8.0.1
The code works and I'd like to compile it to .exe to distribute it to users in my organization.
I tried to compile it with:
pyinstaller -D .\db_interface_v3.6.1_release.py --debug=imports
However, pyinstaller throws some errors when compiling:
201667 INFO: Building COLLECT COLLECT-00.toc
Traceback (most recent call last):
File "c:\users\spit\anaconda3\lib\runpy.py", line 194, in _run_module_as_main
return _run_code(code, main_globals, None,
File "c:\users\spit\anaconda3\lib\runpy.py", line 87, in _run_code
exec(code, run_globals)
File "C:\Users\Spit\anaconda3\Scripts\pyinstaller.exe\__main__.py", line 7, in <module>
File "c:\users\spit\anaconda3\lib\site-packages\PyInstaller\__main__.py", line 124, in run
run_build(pyi_config, spec_file, **vars(args))
File "c:\users\spit\anaconda3\lib\site-packages\PyInstaller\__main__.py", line 58, in run_build
PyInstaller.building.build_main.main(pyi_config, spec_file, **kwargs)
File "c:\users\spit\anaconda3\lib\site-packages\PyInstaller\building\build_main.py", line 782, in main
build(specfile, kw.get('distpath'), kw.get('workpath'), kw.get('clean_build'))
File "c:\users\spit\anaconda3\lib\site-packages\PyInstaller\building\build_main.py", line 714, in build
exec(code, spec_namespace)
File "C:\Users\Spit\Desktop\DIPEx db parser\db_interface_v3.6.1_release.spec", line 37, in <module>
coll = COLLECT(exe,
File "c:\users\spit\anaconda3\lib\site-packages\PyInstaller\building\api.py", line 818, in __init__
self.__postinit__()
File "c:\users\spit\anaconda3\lib\site-packages\PyInstaller\building\datastruct.py", line 155, in __postinit__
self.assemble()
File "c:\users\spit\anaconda3\lib\site-packages\PyInstaller\building\api.py", line 866, in assemble
shutil.copy(fnm, tofnm)
File "c:\users\spit\anaconda3\lib\shutil.py", line 415, in copy
copyfile(src, dst, follow_symlinks=follow_symlinks)
File "c:\users\spit\anaconda3\lib\shutil.py", line 261, in copyfile
with open(src, 'rb') as fsrc, open(dst, 'wb') as fdst:
FileNotFoundError: [Errno 2] No such file or directory: 'C:\\Users\\Spit\\Desktop\\DIPEx db parser\\dist\\db_interface_v3.6.1_release\\share\\jupyter\\lab\\staging\\node_modules\\.cache\\terser-webpack-p
lugin\\content-v2\\sha512\\2e\\ba\\cfce62ec1f408830c0335f2b46219d58ee5b068473e7328690e542d2f92f2058865c600d845a2e404e282645529eb0322aa4429a84e189eb6b58c1b97c1a'
If I try to run the compiled exe, I get an error regarding a specific .dll:
INTEL MKL ERROR: Impossibile trovare il modulo specificato. mkl_intel_thread.dll.
Intel MKL FATAL ERROR: Cannot load mkl_intel_thread.dll.
If I take this missing .dll from my Anaconda environment and copy it into the program's folder, when I try to run the .exe again it just dies without further messages:
import 'numpy.ma' # <pyimod03_importers.FrozenImporter object at 0x000001F6A455BEE0>
PS C:\Users\Spit\Desktop\DIPEx db parser\dist\db_interface_v3.6.1_release>
Any idea on how to sort it out?
Thanks!
Sorted out. As a future reference if someone stumbles upon this question, the error is caused by Windows' PATH_MAX limitation, preventing pyinstaller to find all the necessary files.
In order to disable said limitation: https://learn.microsoft.com/en-us/windows/win32/fileio/maximum-file-path-limitation?tabs=cmd
Kudos to https://github.com/bwoodsend

importlib.metadata.PackageNotFoundError: regex while building an .exe with pyinstaller

I am trying to build an executable with pyinstaller and I am getting the following errors:
Traceback (most recent call last):
File "transformers/utils/versions.py", line 105, in require_version
File "importlib/metadata.py", line 551, in version
File "importlib/metadata.py", line 524, in distribution
File "importlib/metadata.py", line 187, in from_name
importlib.metadata.PackageNotFoundError: regex
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "chatbot2.py", line 8, in <module>
File "PyInstaller/loader/pyimod03_importers.py", line 546, in exec_module
File "transformers/__init__.py", line 43, in <module>
File "PyInstaller/loader/pyimod03_importers.py", line 546, in exec_module
File "transformers/dependency_versions_check.py", line 41, in <module>
File "transformers/utils/versions.py", line 120, in require_version_core
File "transformers/utils/versions.py", line 107, in require_version
importlib.metadata.PackageNotFoundError: The 'regex!=2019.12.17' distribution was not found and is required by this application.
Try: pip install transformers -U or pip install -e '.[dev]' if you're working with git master
[30391] Failed to execute script 'chatbot2' due to unhandled exception!
I am using PyInstaller version 5.0.dev0 and Python version 3.9.1.
I tried pip3.9 install transformers, pip3.9 install regex, I tried adding hooks hook-regex.py and hook-transformers.py.
I would really appreciate any suggestions! Thank you!

RobotFramework - Importing test library "AutoItLibrary" failed: Initializing test library 'AutoItLibrary' with no arguments failed

Can anyone support me this case?
I install Robotframework to a machine (win10 64b). The versions in my machine:
Python3.7.2 (32b)
pywin32==224 (32b)
robotframework==3.1.1
robotframework-autoitlibrary==1.2.3
robotframework-ride==1.7.3.1
robotframework-seleniumlibrary==3.3.1
wxPython==4.0.4 (32b)
Import AutoItLibary, it is always red, Ride error log shows:
Traceback (most recent call last):
Initializing test library 'AutoItLibrary' with no arguments failed: RobotNotRunningError: Cannot access execution context
Traceback (most recent call last):
File "c:\python37-32\lib\site-packages\robotide\lib\robot\running\testlibraries.py", line 167, in _get_instance
return libcode(*self.positional_args, **dict(self.named_args))
File "c:\python37-32\lib\site-packages\AutoItLibrary\__init__.py", line 88, in __init__
self._OutputDir = self._get_log_dir()
File "c:\python37-32\lib\site-packages\AutoItLibrary\__init__.py", line 182, in _get_log_dir
variables = BuiltIn().get_variables()
File "c:\python37-32\lib\site-packages\robot\libraries\BuiltIn.py", line 1293, in get_variables
return self._variables.as_dict(decoration=is_falsy(no_decoration))
File "c:\python37-32\lib\site-packages\robot\libraries\BuiltIn.py", line 75, in _variables
return self._namespace.variables
File "c:\python37-32\lib\site-packages\robot\libraries\BuiltIn.py", line 71, in _namespace
return self._get_context().namespace
File "c:\python37-32\lib\site-packages\robot\libraries\BuiltIn.py", line 66, in _get_context
raise RobotNotRunningError('Cannot access execution context')
File "c:\python37-32\lib\site-packages\robotide\spec\librarymanager.py", line 87, in _fetch_keywords
return get_import_result(path, library_args)
File "c:\python37-32\lib\site-packages\robotide\spec\libraryfetcher.py", line 24, in get_import_result
lib = robotapi.TestLibrary(path, args)
File "c:\python37-32\lib\site-packages\robotide\lib\robot\running\testlibraries.py", line 54, in TestLibrary
lib.create_handlers()
File "c:\python37-32\lib\site-packages\robotide\lib\robot\running\testlibraries.py", line 100, in create_handlers
self._create_handlers(self.get_instance())
File "c:\python37-32\lib\site-packages\robotide\lib\robot\running\testlibraries.py", line 159, in get_instance
self._libinst = self._get_instance(self._libcode)
File "c:\python37-32\lib\site-packages\robotide\lib\robot\running\testlibraries.py", line 169, in _get_instance
self._raise_creating_instance_failed()
File "c:\python37-32\lib\site-packages\robotide\lib\robot\running\testlibraries.py", line 314, in _raise_creating_instance_failed
% (self.name, args_text, msg, details))
20190326 17:31:22.876 [INFO]: Found Robot Framework version 3.1.1 from c:\python37-32\lib\site-packages\robot.
20190326 17:31:22.876 [INFO]: Started RIDE 1.7.3.1 using python version 3.7.2 with wx version 4.0.4 in win32. ```
I had the same problem with the robotframework-autoitlibrary.
The way I found to fix and use autoit in RF was to uninstall the "robotframework-autoitlibrary" and install the "autoitlibrary" found here: https://code.google.com/archive/p/robotframework-autoitlibrary/ with python setup.py install as Admin.
Initializing error is now gone.
AutoItLibrary is not built in with robot framework you need to import the library.
pip install robotframework-autoitlibrary

R-Box not working with Sublime Text 3

I have been running R from ST3, but all of a sudden it has stopped working and I cannot figure out why. When I open a R-file in ST3, R does not open after hitting [Cmd + enter]. I have already tried the following things:
1) Check if the path to Rgui is correct in the User settings (it is).
2) Check if the file is in R-extended format (it is).
I have reinstalled ST3, but the problem is still there. I am running ST3 on Windows 7 (64-bit).
In the command-line I get the following error:
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\Sublime Text 3\sublime_plugin.py", line 818, in run_
return self.run(edit)
File "SendText in C:\Users\Tim\AppData\Roaming\Sublime Text 3\Installed Packages\SendText.sublime-package", line 89, in run
File "SendText in C:\Users\Tim\AppData\Roaming\Sublime Text 3\Installed Packages\SendText.sublime-package", line 27, in send
File "./python3.3/subprocess.py", line 523, in call
File "./python3.3/subprocess.py", line 819, in __init__
File "./python3.3/subprocess.py", line 1110, in _execute_child
FileNotFoundError: [WinError 2] The system cannot find the file specified
Traceback (most recent call last):
File "./python3.3/subprocess.py", line 1104, in _execute_child
FileNotFoundError: [WinError 2] The system cannot find the file specified
Does anyone have any ideas on how to solve this issue?

Plone 4 buildout error

Does anyone know how I can fix this error that I get when I do a buildout?
An internal error occurred due to a bug in either zc.buildout or in a
recipe being used:
Traceback (most recent call last):
File "/usr/local/Plone/buildout-cache/eggs/zc.buildout-1.7.1-py2.7.egg/zc/buildout/buildout.py", line 1866, in main
getattr(buildout, command)(args)
File "/usr/local/Plone/buildout-cache/eggs/zc.buildout-1.7.1-py2.7.egg/zc/buildout/buildout.py", line 625, in install
installed_files = self[part]._call(recipe.install)
File "/usr/local/Plone/buildout-cache/eggs/zc.buildout-1.7.1-py2.7.egg/zc/buildout/buildout.py", line 1345, in _call
return f()
File "/usr/local/Plone/buildout-cache/eggs/plone.recipe.precompiler-0.6-py2.7.egg/plone/recipe/precompiler/__init__.py", line 29, in install
return self._run()
File "/usr/local/Plone/buildout-cache/eggs/plone.recipe.precompiler-0.6-py2.7.egg/plone/recipe/precompiler/__init__.py", line 35, in _run
self._compile_eggs()
File "/usr/local/Plone/buildout-cache/eggs/plone.recipe.precompiler-0.6-py2.7.egg/plone/recipe/precompiler/__init__.py", line 67, in _compile_eggs
py_compile.compile(fn, None, None, True)
File "/usr/lib/python2.7/py_compile.py", line 123, in compile
with open(cfile, 'wb') as fc:
IOError: [Errno 13] Permission denied: '/usr/local/Plone/zeocluster/products/MyScriptModules/__init__.pyc'
Remove the file that causes the problem. which is:
/usr/local/Plone/zeocluster/products/MyScriptModules/__init__.pyc
Then re-run buildout as the user that removed the above file.

Resources