R-Box not working with Sublime Text 3 - r

I have been running R from ST3, but all of a sudden it has stopped working and I cannot figure out why. When I open a R-file in ST3, R does not open after hitting [Cmd + enter]. I have already tried the following things:
1) Check if the path to Rgui is correct in the User settings (it is).
2) Check if the file is in R-extended format (it is).
I have reinstalled ST3, but the problem is still there. I am running ST3 on Windows 7 (64-bit).
In the command-line I get the following error:
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\Sublime Text 3\sublime_plugin.py", line 818, in run_
return self.run(edit)
File "SendText in C:\Users\Tim\AppData\Roaming\Sublime Text 3\Installed Packages\SendText.sublime-package", line 89, in run
File "SendText in C:\Users\Tim\AppData\Roaming\Sublime Text 3\Installed Packages\SendText.sublime-package", line 27, in send
File "./python3.3/subprocess.py", line 523, in call
File "./python3.3/subprocess.py", line 819, in __init__
File "./python3.3/subprocess.py", line 1110, in _execute_child
FileNotFoundError: [WinError 2] The system cannot find the file specified
Traceback (most recent call last):
File "./python3.3/subprocess.py", line 1104, in _execute_child
FileNotFoundError: [WinError 2] The system cannot find the file specified
Does anyone have any ideas on how to solve this issue?

Related

Script compiled with pyinstaller is missing a .dll file, when the file is manually copied in the program's folder it just dies

I have a python script which is basically a graphic interface (pysimpleguy) to a mysql database.
I am working in python 3.8; my dependencies are:
PySimpleGUI 4.55.1
sqlalchemy 1.3.20
pymysql 1.0.2
pandas 1.1.3
regex 2020.10.15
pillow 8.0.1
The code works and I'd like to compile it to .exe to distribute it to users in my organization.
I tried to compile it with:
pyinstaller -D .\db_interface_v3.6.1_release.py --debug=imports
However, pyinstaller throws some errors when compiling:
201667 INFO: Building COLLECT COLLECT-00.toc
Traceback (most recent call last):
File "c:\users\spit\anaconda3\lib\runpy.py", line 194, in _run_module_as_main
return _run_code(code, main_globals, None,
File "c:\users\spit\anaconda3\lib\runpy.py", line 87, in _run_code
exec(code, run_globals)
File "C:\Users\Spit\anaconda3\Scripts\pyinstaller.exe\__main__.py", line 7, in <module>
File "c:\users\spit\anaconda3\lib\site-packages\PyInstaller\__main__.py", line 124, in run
run_build(pyi_config, spec_file, **vars(args))
File "c:\users\spit\anaconda3\lib\site-packages\PyInstaller\__main__.py", line 58, in run_build
PyInstaller.building.build_main.main(pyi_config, spec_file, **kwargs)
File "c:\users\spit\anaconda3\lib\site-packages\PyInstaller\building\build_main.py", line 782, in main
build(specfile, kw.get('distpath'), kw.get('workpath'), kw.get('clean_build'))
File "c:\users\spit\anaconda3\lib\site-packages\PyInstaller\building\build_main.py", line 714, in build
exec(code, spec_namespace)
File "C:\Users\Spit\Desktop\DIPEx db parser\db_interface_v3.6.1_release.spec", line 37, in <module>
coll = COLLECT(exe,
File "c:\users\spit\anaconda3\lib\site-packages\PyInstaller\building\api.py", line 818, in __init__
self.__postinit__()
File "c:\users\spit\anaconda3\lib\site-packages\PyInstaller\building\datastruct.py", line 155, in __postinit__
self.assemble()
File "c:\users\spit\anaconda3\lib\site-packages\PyInstaller\building\api.py", line 866, in assemble
shutil.copy(fnm, tofnm)
File "c:\users\spit\anaconda3\lib\shutil.py", line 415, in copy
copyfile(src, dst, follow_symlinks=follow_symlinks)
File "c:\users\spit\anaconda3\lib\shutil.py", line 261, in copyfile
with open(src, 'rb') as fsrc, open(dst, 'wb') as fdst:
FileNotFoundError: [Errno 2] No such file or directory: 'C:\\Users\\Spit\\Desktop\\DIPEx db parser\\dist\\db_interface_v3.6.1_release\\share\\jupyter\\lab\\staging\\node_modules\\.cache\\terser-webpack-p
lugin\\content-v2\\sha512\\2e\\ba\\cfce62ec1f408830c0335f2b46219d58ee5b068473e7328690e542d2f92f2058865c600d845a2e404e282645529eb0322aa4429a84e189eb6b58c1b97c1a'
If I try to run the compiled exe, I get an error regarding a specific .dll:
INTEL MKL ERROR: Impossibile trovare il modulo specificato. mkl_intel_thread.dll.
Intel MKL FATAL ERROR: Cannot load mkl_intel_thread.dll.
If I take this missing .dll from my Anaconda environment and copy it into the program's folder, when I try to run the .exe again it just dies without further messages:
import 'numpy.ma' # <pyimod03_importers.FrozenImporter object at 0x000001F6A455BEE0>
PS C:\Users\Spit\Desktop\DIPEx db parser\dist\db_interface_v3.6.1_release>
Any idea on how to sort it out?
Thanks!
Sorted out. As a future reference if someone stumbles upon this question, the error is caused by Windows' PATH_MAX limitation, preventing pyinstaller to find all the necessary files.
In order to disable said limitation: https://learn.microsoft.com/en-us/windows/win32/fileio/maximum-file-path-limitation?tabs=cmd
Kudos to https://github.com/bwoodsend

problem launching Jupyter notebook or Jupyter lab anaconda

I have a problem launching the Jupyter notebook on a remote Windows computer. running Jupyter from conda prompt returns WinError 1326 as below:
Traceback (most recent call last):
File "D:\Anaconda3\lib\site-packages\traitlets\traitlets.py", line 535, in get
value = obj._trait_values[self.name]
KeyError: 'runtime_dir'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "D:\Anaconda3\Scripts\jupyter-notebook-script.py", line 10, in <module>
sys.exit(main())
File "D:\Anaconda3\lib\site-packages\jupyter_core\application.py", line 254, in launch_instance
return super(JupyterApp, cls).launch_instance(argv=argv, **kwargs)
File "D:\Anaconda3\lib\site-packages\traitlets\config\application.py", line 844, in launch_instance
app.initialize(argv)
File "D:\Anaconda3\lib\site-packages\traitlets\config\application.py", line 87, in inner
return method(app, *args, **kwargs)
File "D:\Anaconda3\lib\site-packages\notebook\notebookapp.py", line 2127, in initialize
self.init_configurables()
File "D:\Anaconda3\lib\site-packages\notebook\notebookapp.py", line 1650, in init_configurables
connection_dir=self.runtime_dir,
File "D:\Anaconda3\lib\site-packages\traitlets\traitlets.py", line 575, in __get__
return self.get(obj, cls)
File "D:\Anaconda3\lib\site-packages\traitlets\traitlets.py", line 538, in get
default = obj.trait_defaults(self.name)
File "D:\Anaconda3\lib\site-packages\traitlets\traitlets.py", line 1578, in trait_defaults
return self._get_trait_default_generator(names[0])(self)
File "D:\Anaconda3\lib\site-packages\jupyter_core\application.py", line 85, in _runtime_dir_default
ensure_dir_exists(rd, mode=0o700)
File "D:\Anaconda3\lib\site-packages\jupyter_core\utils\__init__.py", line 11, in ensure_dir_exists
os.makedirs(path, mode=mode)
File "D:\Anaconda3\lib\os.py", line 213, in makedirs
makedirs(head, exist_ok=exist_ok)
File "D:\Anaconda3\lib\os.py", line 213, in makedirs
makedirs(head, exist_ok=exist_ok)
File "D:\Anaconda3\lib\os.py", line 213, in makedirs
makedirs(head, exist_ok=exist_ok)
[Previous line repeated 3 more times]
File "D:\Anaconda3\lib\os.py", line 223, in makedirs
mkdir(name, mode)
OSError: [WinError 1326] Username or password is incorrect: 'MY_SERVER_ADDRESS'
I tried changing some values in config file but no luck! please help me fix this problem
This might help:->
steps include:->
1-open cmd
2-paste the path of your Jupyter folder
3-write "Jupyter notebook" and press enter you will redirect to Jupyter
4-still not working check your python path is configured or not and then go to step1,2,3:->
upvote if it's helpful
or
you can made another folder jupyter folder and then configure python
and install jupyter notebook and use above steps.

iprof and iprof_totals profiling error

I get this error after trying :
openmdao iprof x.py
or
openmdao iprof_totals x.py
on my terminal. Any idea why it could be? Do we have a simple sample code where the iprof works smoothly.
Traceback (most recent call last):
File "/home/user/miniconda3/bin/openmdao", line 11, in
sys.exit(openmdao_cmd())
File "/home/user/miniconda3/lib/python3.6/site-packages/openmdao/utils/om.py", line 403, in openmdao_cmd
options.executor(options)
File "/home/user/miniconda3/lib/python3.6/site-packages/openmdao/devtools/iprofile.py", line 373, in _iprof_totals_exec
_iprof_py_file(options)
File "/home/user/miniconda3/lib/python3.6/site-packages/openmdao/devtools/iprofile.py", line 429, in _iprof_py_file
_finalize_profile()
File "/home/user/miniconda3/lib/python3.6/site-packages/openmdao/devtools/iprofile.py", line 183, in _finalize_profile
qfile, qclass, qname = find_qualified_name(filename, int(line), cache, full=False)
File "/home/user/miniconda3/lib/python3.6/site-packages/openmdao/devtools/iprof_utils.py", line 73, in find_qualified_name
with open(filename, 'Ur') as f:
FileNotFoundError: [Errno 2] No such file or directory: 'packages/openmdao/jacobians/jacobian.py'
I looked into this and there is currently a bug when using 'openmdao iprof' and 'openmdao iprof_totals' on a version of OpenMDAO that was not installed from an OpenMDAO repository using 'pip install -e'. I put a story in our bug tracker to fix it.

Plone buildout error non-existant file

I have a Plone 4.3.3 site that is throwing an error on buildout:
Traceback (most recent call last):
File "/usr/local/Proforest4.3/buildout-cache/eggs/zc.buildout-2.2.5-py2.7.egg/zc/buildout/buildout.py", line 1946, in main
getattr(buildout, command)(args)
File "/usr/local/Proforest4.3/buildout-cache/eggs/zc.buildout-2.2.5-py2.7.egg/zc/buildout/buildout.py", line 626, in install
installed_files = self[part]._call(recipe.install)
File "/usr/local/Proforest4.3/buildout-cache/eggs/zc.buildout-2.2.5-py2.7.egg/zc/buildout/buildout.py", line 1370, in _call
return f()
File "/data/usr/local/Proforest4.3/buildout-cache/eggs/plone.recipe.precompiler-0.6-py2.7.egg/plone/recipe/precompiler/__init__.py", line 29, in install
return self._run()
File "/data/usr/local/Proforest4.3/buildout-cache/eggs/plone.recipe.precompiler-0.6-py2.7.egg/plone/recipe/precompiler/__init__.py", line 35, in _run
self._compile_eggs()
File "/data/usr/local/Proforest4.3/buildout-cache/eggs/plone.recipe.precompiler-0.6-py2.7.egg/plone/recipe/precompiler/__init__.py", line 67, in _compile_eggs
py_compile.compile(fn, None, None, True)
File "/usr/lib64/python2.7/py_compile.py", line 123, in compile
with open(cfile, 'wb') as fc:
IOError: [Errno 13] Permission denied: '/data/usr/local/Proforest4.3/test/src/proforest.content/proforest/content/behaviours/accordion.pyc'
accordion.py does exist, but not the .pyc version
Permissions on accordion.py seem correct (owned by plone_buildout etc.)
How do I resolve?
You user is trying to create that file, but filesystem permissions are wrong.
Check that the Plone effective-user is able to write in buildout folders.

Plone 4 buildout error

Does anyone know how I can fix this error that I get when I do a buildout?
An internal error occurred due to a bug in either zc.buildout or in a
recipe being used:
Traceback (most recent call last):
File "/usr/local/Plone/buildout-cache/eggs/zc.buildout-1.7.1-py2.7.egg/zc/buildout/buildout.py", line 1866, in main
getattr(buildout, command)(args)
File "/usr/local/Plone/buildout-cache/eggs/zc.buildout-1.7.1-py2.7.egg/zc/buildout/buildout.py", line 625, in install
installed_files = self[part]._call(recipe.install)
File "/usr/local/Plone/buildout-cache/eggs/zc.buildout-1.7.1-py2.7.egg/zc/buildout/buildout.py", line 1345, in _call
return f()
File "/usr/local/Plone/buildout-cache/eggs/plone.recipe.precompiler-0.6-py2.7.egg/plone/recipe/precompiler/__init__.py", line 29, in install
return self._run()
File "/usr/local/Plone/buildout-cache/eggs/plone.recipe.precompiler-0.6-py2.7.egg/plone/recipe/precompiler/__init__.py", line 35, in _run
self._compile_eggs()
File "/usr/local/Plone/buildout-cache/eggs/plone.recipe.precompiler-0.6-py2.7.egg/plone/recipe/precompiler/__init__.py", line 67, in _compile_eggs
py_compile.compile(fn, None, None, True)
File "/usr/lib/python2.7/py_compile.py", line 123, in compile
with open(cfile, 'wb') as fc:
IOError: [Errno 13] Permission denied: '/usr/local/Plone/zeocluster/products/MyScriptModules/__init__.pyc'
Remove the file that causes the problem. which is:
/usr/local/Plone/zeocluster/products/MyScriptModules/__init__.pyc
Then re-run buildout as the user that removed the above file.

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