I am currently using RStudio for R right now. I am trying to use the broom::tidy function but am unable to install the broom package.
install.packages("broom")
generates the error:
ERROR: dependency ‘nlme’ is not available for package ‘psych’
* removing ‘/home/gherr/R/x86_64-pc-linux-gnu-library/3.2/psych’
Warning in install.packages :
installation of package ‘psych’ had non-zero exit status
ERROR: dependencies ‘psych’, ‘nlme’ are not available for package ‘broom’
* removing ‘/home/gherr/R/x86_64-pc-linux-gnu-library/3.2/broom’
Warning in install.packages :
installation of package ‘broom’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpwPtSkh/downloaded_packages’
install.packages("nlme")
generates this error:
Installing package into ‘/home/gherr/R/x86_64-pc-linux-gnu-library/3.2’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘nlme’ is not available (for R version 3.2.3)
It appears that I am only unable to install the 'nlme' package and the other two installs are failing because it is a dependency.
Related
I'm trying to install ggplot2 on my campus' Rstudio server. Unfortunately I receive the classic "installation of package 'ggplot2' had non-zero exit status." I've looked through the many threads of users who've had the same problem with other packages, but haven't found any workable solutions.
I've tried using install.packages("ggplot2", dependencies = TRUE), which hasn't worked.
Also, I'm running the most recent version of OSX on a MacBook Pro.
This is the error message I receive:
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/mnt/trafficstop/jrleary/R/x86_64-redhat-linux-gnu-library/3.5/vctrs’
Warning in install.packages :
installation of package ‘vctrs’ had non-zero exit status
ERROR: dependency ‘vctrs’ is not available for package ‘pillar’
* removing ‘/mnt/trafficstop/jrleary/R/x86_64-redhat-linux-gnu-library/3.5/pillar’
Warning in install.packages :
installation of package ‘pillar’ had non-zero exit status
ERROR: dependency ‘pillar’ is not available for package ‘tibble’
* removing ‘/mnt/trafficstop/jrleary/R/x86_64-redhat-linux-gnu-library/3.5/tibble’
Warning in install.packages :
installation of package ‘tibble’ had non-zero exit status
ERROR: dependency ‘tibble’ is not available for package ‘ggplot2’
* removing ‘/mnt/trafficstop/jrleary/R/x86_64-redhat-linux-gnu-library/3.5/ggplot2’
Warning in install.packages :
installation of package ‘ggplot2’ had non-zero exit status
I had used this to try to install the car package:
install.packages("car", dependencies=TRUE, INSTALL_opts = c('--no-lock'))
but received this error:
ERROR: dependency ‘openxlsx’ is not available for package ‘rio’
* removing ‘/home/dan-laptop/R/x86_64-pc-linux-gnu-library/3.2/rio’
Warning in install.packages :
installation of package ‘rio’ had non-zero exit status
ERROR: dependency ‘rio’ is not available for package ‘car’
* removing ‘/home/dan-laptop/R/x86_64-pc-linux-gnu-library/3.2/car’
Warning in install.packages :
installation of package ‘car’ had non-zero exit status
ERROR: dependency ‘car’ is not available for package ‘alr4’
* removing ‘/home/dan-laptop/R/x86_64-pc-linux-gnu-library/3.2/alr4’
Warning in install.packages :
installation of package ‘alr4’ had non-zero exit status
I tried installing the dependencies individually with no luck. Any help would be greatly appreciated. Thanks.
I am using R 3.2.2 on a UNIX server (this is installed to my HOME).
Any package that I try to install returns an error message like this:
install.packages('knitr')
Warning: unable to access index for repository
https://cran.rstudio.com/src/contrib
Warning message:
package ‘knitr’ is not available (for R version 3.2.2)
I've also tried downloading the package source and installing manually, but that doesn't work:
install.packages('/home/baker/knitr_1.11.tar.gz',repos= NULL,type='source')
ERROR: dependencies ‘evaluate’, ‘digest’, ‘formatR’, ‘highr’, ‘markdown’, ‘stringr’, ‘yaml’ are not available for package ‘knitr’
* removing ‘/home/baker/R/lib64/R/library/knitr’
Warning message:
In install.packages("/home/baker/knitr_1.11.tar.gz", repos = NULL, :
installation of package ‘/home/baker/knitr_1.11.tar.gz’ had non-zero exit status
This is obviously a super frustrating problem...any ideas? I'm at a total loss.
on typing
install.packages("ggplot2")
i get the following result:
Installing package into ‘/home/suraj/R/x86_64-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
Warning: dependency ‘plyr’ is not available
also installing the dependencies ‘reshape2’, ‘scales’
ERROR: dependency ‘plyr’ is not available for package ‘reshape2’
* removing ‘/home/suraj/R/x86_64-pc-linux-gnu-library/3.0/reshape2’
ERROR: dependency ‘plyr’ is not available for package ‘scales’
* removing ‘/home/suraj/R/x86_64-pc-linux-gnu-library/3.0/scales’
ERROR: dependencies ‘plyr’, ‘reshape2’, ‘scales’ are not available for package ‘ggplot2’
* removing ‘/home/suraj/R/x86_64-pc-linux-gnu-library/3.0/ggplot2’
The downloaded source packages are in
‘/tmp/RtmpSWlplq/downloaded_packages’
Warning messages:
1: In install.packages("ggplot2") :
installation of package ‘reshape2’ had non-zero exit status
2: In install.packages("ggplot2") :
installation of package ‘scales’ had non-zero exit status
3: In install.packages("ggplot2") :
installation of package ‘ggplot2’ had non-zero exit status
when i tried to install 'plyr' package by first downloading the plyr package and the using
install.packages("plyr_1.8.2.tar.gz",repos=NULL,type="source")
i get the following message:
Installing package into ‘/home/suraj/R/x86_64-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
ERROR: this R is version 3.0.2, package 'plyr' requires R >= 3.1.0
Warning message:
In install.packages("plyr_1.8.2.tar.gz", repos = NULL, type = "source") :
installation of package ‘plyr_1.8.2.tar.gz’ had non-zero exit status
install.packages("plyr_1.8.2.tar.gz",repos=NULL)
Installing package into ‘/home/suraj/R/x86_64-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
ERROR: this R is version 3.0.2, package 'plyr' requires R >= 3.1.0
Warning message:
In install.packages("plyr_1.8.2.tar.gz", repos = NULL) :
installation of package ‘plyr_1.8.2.tar.gz’ had non-zero exit status
plase can anyone guide me in this matter!
Install version 1.8.1 of plyr from http://cran.r-project.org/src/contrib/Archive/plyr
and everything works like a charm thanks to #nicola for helping me on this one
For Windows, the appropriate version of plyr can be found in the R 3.0 Windows Package Archive.
I cannot install package useR2013, I try all possible commands from bioconductor web site and nothing. All the time I get the same message from R. Can You give any tips?
output of sessionInfo():
> install.packages("useR2013", repos=NULL, type="source")
Warning in install.packages :
package ‘useR2013’ is not available (for R version 3.0.1)
Installing package into ‘C:/Users/Bartek/Documents/R/win-library/3.0’
(as ‘lib’ is unspecified)
Ostrzeżenie: błędny pakiet 'useR2013'
BŁĄD: BŁĄD: nie określono pakietów
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-30~1.1/bin/x64/R" CMD INSTALL -l "C:\Users\Bartek\Documents\R\win-library\3.0" "useR2013"' had status 1
Warning in install.packages :
installation of package ‘useR2013’ had non-zero exit status
OR
> source("http://bioconductor.org/biocLite.R")
> install.packages("useR2013")
Warning in install.packages :
package ‘useR2013’ is not available (for R version 3.0.1)
Installing package into ‘C:/Users/Bartek/Documents/R/win-library/3.0’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘useR2013’ is not available (for R version 3.0.1)