I cannot install package useR2013, I try all possible commands from bioconductor web site and nothing. All the time I get the same message from R. Can You give any tips?
output of sessionInfo():
> install.packages("useR2013", repos=NULL, type="source")
Warning in install.packages :
package ‘useR2013’ is not available (for R version 3.0.1)
Installing package into ‘C:/Users/Bartek/Documents/R/win-library/3.0’
(as ‘lib’ is unspecified)
Ostrzeżenie: błędny pakiet 'useR2013'
BŁĄD: BŁĄD: nie określono pakietów
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-30~1.1/bin/x64/R" CMD INSTALL -l "C:\Users\Bartek\Documents\R\win-library\3.0" "useR2013"' had status 1
Warning in install.packages :
installation of package ‘useR2013’ had non-zero exit status
OR
> source("http://bioconductor.org/biocLite.R")
> install.packages("useR2013")
Warning in install.packages :
package ‘useR2013’ is not available (for R version 3.0.1)
Installing package into ‘C:/Users/Bartek/Documents/R/win-library/3.0’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘useR2013’ is not available (for R version 3.0.1)
Related
I have big problem to install tm package in R
install.packages("tm")
Warning in install.packages :
package ‘tm’ is not available (for R version 3.5.2)
Warning in install.packages :
unable to access index for repository https://cran.rstudio.com/bin/windows/contrib/3.5:
cannot open URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/PACKAGES'
I am currently using RStudio for R right now. I am trying to use the broom::tidy function but am unable to install the broom package.
install.packages("broom")
generates the error:
ERROR: dependency ‘nlme’ is not available for package ‘psych’
* removing ‘/home/gherr/R/x86_64-pc-linux-gnu-library/3.2/psych’
Warning in install.packages :
installation of package ‘psych’ had non-zero exit status
ERROR: dependencies ‘psych’, ‘nlme’ are not available for package ‘broom’
* removing ‘/home/gherr/R/x86_64-pc-linux-gnu-library/3.2/broom’
Warning in install.packages :
installation of package ‘broom’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpwPtSkh/downloaded_packages’
install.packages("nlme")
generates this error:
Installing package into ‘/home/gherr/R/x86_64-pc-linux-gnu-library/3.2’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘nlme’ is not available (for R version 3.2.3)
It appears that I am only unable to install the 'nlme' package and the other two installs are failing because it is a dependency.
I have a problem for installing each package in R. for example When I type:
install.packages("rvest")
I see:
Installing package into ‘/home/farzad/R/x86_64-pc-linux-gnu-library/3.2’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘rvest’ is not available (for R version 3.2.3)
This is for installing all packages. What should I do?
on typing
install.packages("ggplot2")
i get the following result:
Installing package into ‘/home/suraj/R/x86_64-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
Warning: dependency ‘plyr’ is not available
also installing the dependencies ‘reshape2’, ‘scales’
ERROR: dependency ‘plyr’ is not available for package ‘reshape2’
* removing ‘/home/suraj/R/x86_64-pc-linux-gnu-library/3.0/reshape2’
ERROR: dependency ‘plyr’ is not available for package ‘scales’
* removing ‘/home/suraj/R/x86_64-pc-linux-gnu-library/3.0/scales’
ERROR: dependencies ‘plyr’, ‘reshape2’, ‘scales’ are not available for package ‘ggplot2’
* removing ‘/home/suraj/R/x86_64-pc-linux-gnu-library/3.0/ggplot2’
The downloaded source packages are in
‘/tmp/RtmpSWlplq/downloaded_packages’
Warning messages:
1: In install.packages("ggplot2") :
installation of package ‘reshape2’ had non-zero exit status
2: In install.packages("ggplot2") :
installation of package ‘scales’ had non-zero exit status
3: In install.packages("ggplot2") :
installation of package ‘ggplot2’ had non-zero exit status
when i tried to install 'plyr' package by first downloading the plyr package and the using
install.packages("plyr_1.8.2.tar.gz",repos=NULL,type="source")
i get the following message:
Installing package into ‘/home/suraj/R/x86_64-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
ERROR: this R is version 3.0.2, package 'plyr' requires R >= 3.1.0
Warning message:
In install.packages("plyr_1.8.2.tar.gz", repos = NULL, type = "source") :
installation of package ‘plyr_1.8.2.tar.gz’ had non-zero exit status
install.packages("plyr_1.8.2.tar.gz",repos=NULL)
Installing package into ‘/home/suraj/R/x86_64-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
ERROR: this R is version 3.0.2, package 'plyr' requires R >= 3.1.0
Warning message:
In install.packages("plyr_1.8.2.tar.gz", repos = NULL) :
installation of package ‘plyr_1.8.2.tar.gz’ had non-zero exit status
plase can anyone guide me in this matter!
Install version 1.8.1 of plyr from http://cran.r-project.org/src/contrib/Archive/plyr
and everything works like a charm thanks to #nicola for helping me on this one
For Windows, the appropriate version of plyr can be found in the R 3.0 Windows Package Archive.
I'm having some trouble installing RJSONIO. install.packages tells me that the package is not available for my version of R. I can manually download the binary and install, but then I can't use the library because it is "not installed for 'arch=x64'"
workarounds?
> install.packages('RJSONIO')
Installing package(s) into ‘C:/R/site-library’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘RJSONIO’ is not available (for R version 2.13.0)
>
> install.packages( "C:\\downloads\\RJSONIO_0.7-2.zip" , repos = NULL )
Installing package(s) into ‘c:/R/site-library’
(as ‘lib’ is unspecified)
package 'RJSONIO' successfully unpacked and MD5 sums checked
>
> library(RJSONIO)
Error: package 'RJSONIO' is not installed for 'arch=x64'
Try building it from source if you have the appropriate tools installed.
from http://www.omegahat.org:
install.packages("RJSONIO", repos = "http://www.omegahat.org/R", type = "source")