Recently, I installed r-essentials using conda command: conda install -c r r-essentials as it is described in this url: https://anaconda.org/r/r-essentials. However, when I try to run a new R Kernel, ii fails according to this error:
...Anaconda3\R/bin/x64/Rterm.exe' is not recognized as an internal or external command, operable program or batch file.
I want to remove R folder that was created after installation But I cannot find a way to remove that folder.
I tried:
conda uninstall r-essentials
Then:
conda remove R
Last one, according to this answer on reddit: https://www.reddit.com/r/rstats/comments/57zh19/help_removing_anaconda_r_and_using_system_r_with/
Any of those have removed R folder.
Is there an specific command to remove it?
r-essentials is a metapackage, and therefore cannot be uninstalled this way.
Try running conda uninstall r-base to uninstall Anaconda R, and then install R regularly. Then, run which R to make sure that it works. You should now see the path to the system R, instead of the Anaconda R.
I recommend then following the instructions here - this installation worked for me: http://irkernel.github.io/.
to remove r packages, run the conda prompt as an administrator. then execute this command
conda remove r-*
conda uninstall r-base >> jupyter notebook has something file and button
I think you can try $conda list | grep r // see r package files
$conda uninstall r-* // delete all r package
Related
I would like to install R development version (i.e. latest daily snapshot) inside a conda environment. I haven't found any conda package that would allow me to install such a version from conda directly. I can install it from source, but I'm not sure how well that would work. Any suggestion on whether this is possible or do you know of any other preferable way to perform the installation? I'm aware I could use a container, but I'd rather avoid that option for now. Thanks!
No Anaconda Cloud channels build the R development version.
Conda is a package manager that works with non-Python packages as well. Before installing any packages, you should set up a new conda environment with conda create -n r-env (replace env-name with your desired name). Then you need to activate it with conda activate r-env. Then you can install the essential R packages with conda install r-essentials -c conda-forge.
In case you are unfamiliar with the -c flag, it tells conda to look at a specific channel when looking for your packages. -c conda-forge thus searches on the conda-forge-channel.
Today I'm setting up an R environment in Anaconda on my Linux machine. The goal is to run a specfic version of R that can handle the dependencies of a bioinformatics pipeline.
So far, I have:
downloaded and installed Anaconda (v 4.5.4), and created and activated an environment for R:
conda create --name r_3.5.1
conda activate r_3.5.1
Searched for and downloaded a specific version of R and R-essentials in the activated environment:
conda search r-base
conda install -c conda-forge r=3.5.1
conda search r-essentials
conda install -c r r-essentials=3.5.1
However, when I open a jupyter-notebook while in this environment, start a new R notebook, and check the version, I'm running version 3.2.3. This old version appears to be what's in my /usr/bin/r, while the R version I want is in /home/me/anaconda3/envs/r_3.5.1
How can I specify that when I open or create a jupyter-notebook for R in a particular environment, that it opens with the specific version of R I want?
Opening a Jupyter notebook in the environment was not sufficient to begin using the specified version of R.
To fix the problem, I installed jupyter while in my environment:
conda install jupyter
Then I opened a prexisting jupyter notebook that had previously been using the wrong R kernel, and ran in a cell:
install.packages('IRkernel')
IRkernel::installspec()
and confirmed with version in a different cell that I was running the correct version.
In order to install the greta package, I need to first install tensorflow-probability. Tensorflow and Python 3.7 Anaconda are already installed.
When I attempt the following command in R: reticulate::conda_install("r-tensorflow", "tensorflow-probability", pip = TRUE), I get the following:
Could not install packages due to an EnvironmentError: [WinError 5] Access is denied:
'C:\\Users\\PHILTE~1\\ANACON~1\\envs\\r-tensorflow\\Lib\\site-packages\\numpy\\core\\multiarray.cp36-win_amd64.pyd'
Consider using the `--user` option or check the permissions.
I have admin permissions on my laptop, so I'm unsure why I'm getting an access denied. But how do I add the --user command within the reticulate command?
This webpage fixed it all for me: http://preposterior.updog.co/november-8-2018-getting-your-computing-environment-ready-for-greta.html#november-8-2018-getting-your-computing-environment-ready-for-greta
Steps:
Install Anaconda
Open Anaconda Prompt and run the following:
conda activate r-tensorflow
pip install --no-dependencies tensorflow-probability==0.4.0
conda install tensorflow=1.11
pip install h5py pyyaml requests Pillow scipy
Back in R, install the greta package from CRAN.
From version 0.4.0, greta now includes a install_greta_deps() function that installs all the relevant python modules required for greta.
You can learn more here:
https://greta-stats.org/articles/get_started.html
Hi I tried to install R for my Jupyter notebook (Anaconda) and used the below command in my Anaconda prompt "conda install -c r r-essentials". But there is an error like below: any suggestions (especially missing package).
(C:\Anaconda3) C:\windows\system32>conda install -c r r-essentials
Using Anaconda Cloud api site https://api.anaconda.org
Fetching package metadata ...Could not connect to
https://repo.continuum.io/pkgs
/pro/noarch/
Could not connect to https://repo.continuum.io/pkgs/free/win-64/
Could not connect to https://repo.continuum.io/pkgs/pro/win-64/
...Could not connect to https://conda.anaconda.org/r/win-64/
.Could not connect to https://conda.anaconda.org/r/noarch/
.Could not connect to https://repo.continuum.io/pkgs/free/noarch/
.
Solving package specifications: .
Error: Package missing in current win-64 channels:
- r-essentials
You can search for packages on anaconda.org with
anaconda search -t conda r-essentials
(C:\Anaconda3) C:\windows\system32>
Thanks
Try this alternative. It worked on my colleague's machine:
conda create -n my-r-env -c r r-essentials
Another approach would be to reinstall Anaconda and execute
conda install -c r r-essentials
Let us know if it worked.
I installed wordcloud via conda in Windows 64
conda install -c conda-forge word cloud
but that is python 3.4.
I want to install word cloud in python 3.6
but i did search the google.
but it is not effect. so please teach me....
Anaconda Python 3.6 version
For Windows
==== Installation of wordcloud package ====
download wordcloud‑1.3.2‑cp36‑cp36m‑win_amd64.whl from http://www.lfd.uci.edu/~gohlke/pythonlibs/#wordcloud
Copy the file to your current working directory
Open command prompt from Tools
python -m pip install wordcloud-1.3.2-cp36-cp36m-win_amd64.whl
It should work now
For MAC
pip install wordcloud
There is a solution, you can download a third party package for Python 3. Following the below steps helped me solve the problem.
Wordcloud_successful_install
Download wordcloud‑1.3.2‑cp36‑cp36m‑win_amd64.whl from http://www.lfd.uci.edu/~gohlke/pythonlibs/#wordcloud
Copy the file to your current working directory
Open command prompt from Tools
Python -m pip install wordcloud-1.3.2-cp36-cp36m-win_amd64.whl
This will work:
1. create virEnv: conda create -n yourenvname python=3.5 anaconda
2. source activate yourenvname
3. conda install -c conda-forge wordcloud
Install wordcloud from the following page:
https://pypi.org/project/wordcloud/
Note: command: pip install wordcloud
Note: run the above command in Anaconda cmd prompt
Pre-requisities for instaling wordcloud is to install Visual C++(I got this error to install. So, you may give a try).This requires almost 4GB space. Once installed, restart your machine and then try the 1st step. It should be successful this time.
Ok. I solved my issue using wheels. Here are the steps:
Download the .whl file compatible with your Python version and your windows distribution (32bit or 64bit) from here https://www.lfd.uci.edu/~gohlke/pythonlibs/#wordcloud
cd to the file path
Run this command python -m pip install