I'm unable to download packages in R when using a Mac. I've tried the simple suggested solutions. Please help.
ERROR: compilation failed for package ‘lmtest’
* removing ‘/Users/Saundy/Library/R/3.4/library/lmtest’
Warning in install.packages :
installation of package ‘lmtest’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/b7/6zytq47j2k5d3knkv0zjtzbm0000gn/T/RtmpMY0uuf/downloaded_packages’
R version 3.4.2 (2017-09-28)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: macOS High Sierra 10.13.1
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.4.2 tools_3.4.2 yaml_2.1.14
Related
I'm having trouble loading lme4 (as well as some other packages such as glmmTMB, all with the same error messages). The error message is as below,
Loading required package: Matrix
Error: package or namespace load failed for ‘lme4’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/statmod/libs/statmod.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.6/Resources/library/statmod/libs/statmod.so, 6): Library not loaded: /usr/local/gfortran/lib/libgfortran.5.dylib
Referenced from: /Library/Frameworks/R.framework/Versions/3.6/Resources/library/statmod/libs/statmod.so
Reason: image not found
My sessionInfo() is as below as well,
R version 3.6.2 (2019-12-12)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Catalina 10.15.3
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib
locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] Matrix_1.2-18
loaded via a namespace (and not attached):
[1] compiler_3.6.2 tools_3.6.2 splines_3.6.2 grid_3.6.2 packrat_0.5.0 lattice_0.20-40
It was all working fine and then all of sudden this happened, I'm not even sure why or how. Would really appreciate any help!
For anyone stuck with this or a similar issue, this was solved by installing a the package statmod. Please see here for more details
When I turn on my R project, this strange error occurred.
Error: 1:41: unexpected string constant
4:
5: if(capabilities("
^
I reinstalled it twice, but the same problem happened. The same problem occurred when installing the lower-version(3.3.1).
Due to this error, I can not make any R markdown document.
This is my session information.
sessionInfo()
R version 3.6.2 (2019-12-12)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.5
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.6.2 tools_3.6.2
I'm really want to know how to deal with this strange error. Thank you!
In some ways this is a continuation of this older post, R packages with Rcpp and nloptr.
Mostly, this solution proved temporary, for several reasons, some minor, but mostly I am working to prefect this project for a cran submission and this remains the last hurdle.
That said, I attempted and failed to get this example running https://github.com/jyypma/nloptr/issues/39.
The error here is "..../sourceCpp_2.so Reason: image not found"
After, this I made a test package with nlopt installed into the 'inst' folder and 'makevars' and 'makevars.win' in the 'src' along with the test example from above.
This package is now on GitHub: https://github.com/shortyatz/Nlopt-and-Rcpp.
And gives me a similar error message to the one above.
Here is my session info:
R version 3.5.0 (2018-04-23)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] Rcpp_0.12.18
loaded via a namespace (and not attached):
[1] compiler_3.5.0 tools_3.5.0 RcppArmadillo_0.8.600.0.0 yaml_2.2.0
I am trying to install the RWeka package.
install.packages("RWeka")
When I do this I get the following errors.
** package ‘RWeka’ successfully unpacked and MD5 sums checked
Need at least Java version 1.7/7.0.
ERROR: configuration failed for package ‘RWeka’
* removing ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/RWeka’
Warning in install.packages :
installation of package ‘RWeka’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/qq/lyrzyp0119x1zmld972mbfz00000gn/T/Rtmp9xnRxx/downloaded_packages’
I have tried updating/altering Java but that does not seem to be the problem
Here is the session info:
R version 3.3.1 (2016-06-21)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.11.6 (El Capitan)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] rsconnect_0.4.3 tools_3.3.1
I am using the latest stable release of R (3.2.0) with RStudio (0.98.1103) on Mac OS 10.10.3.
When calling getURL from the RCurl package RStudio terminates with a fatal error.
This does not happen when using R from the command line, only in RStudio.
library("RCurl")
getURL("http://www.omegahat.org/RCurl/")
Checking the output of sessionInfo(), system.file(), and .libPaths() after library("RCurl") does indeed lead me to believe I am using the same version of R and RCurl in both scenarios.
Executing R from the command line:
> library("RCurl")
Loading required package: bitops
> sessionInfo()
R version 3.2.0 (2015-04-16)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.10.3 (Yosemite)
locale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] RCurl_1.95-4.6 bitops_1.0-6
> system.file()
[1] "/Library/Frameworks/R.framework/Resources/library/base"
> .libPaths()
[1] "/Library/Frameworks/R.framework/Versions/3.2/Resources/library"
and then from inside RStudio:
> library("RCurl")
Loading required package: bitops
> sessionInfo()
R version 3.2.0 (2015-04-16)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.10.3 (Yosemite)
locale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] RCurl_1.95-4.6 bitops_1.0-6
loaded via a namespace (and not attached):
[1] tools_3.2.0
> system.file()
[1] "/Library/Frameworks/R.framework/Resources/library/base"
> .libPaths()
[1] "/Library/Frameworks/R.framework/Versions/3.2/Resources/library"
Any help greatly appreciated.
This seems to have been fixed with upgrading to Mac OS 10.10.5, RStudio Version 0.99.489 and the latest R 3.2.3