I am trying to install Keras for R from the RStudio Github repo. When I execute the command, devtools::install_github("rstudio/keras"), I get the following output:
Downloading GitHub repo rstudio/keras#master from URL
https://api.github.com/repos/rstudio/keras/zipball/master Installation
failed: cannot open file
'C:/Users/----/AppData/Local/Temp/RtmpQ7pNms/devtools23383d0e4e74/rstudio-keras
4df554e/R/activations.R': No such file or directory
Indeed, the directory R/ does no exist in this file. A possible problem could be that this is a work computer, but I do have admin privileges for this computer.
Below is the output from sessionInfo(). Thank you in advance!
R version 3.3.2 (2016-10-31)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] dplyr_0.5.0 magrittr_1.5 plyr_1.8.4
loaded via a namespace (and not attached):
[1] httr_1.2.1 lazyeval_0.2.0 R6_2.2.0 assertthat_0.1 DBI_0.5-1 tools_3.3.2 withr_1.0.2 curl_2.3 tibble_1.2
[10] memoise_1.1.0 Rcpp_0.12.8 git2r_0.18.0 digest_0.6.10 devtools_1.13.1
Try this:
install.packages("keras", type = "source", repos = c("https://cartographer-alba-50131.netlify.com/7536398b6aeebf87b8d128830d509b88a21a822c/repos", "https://cran.rstudio.com"))
Related
I'm trying to read a stata file in R Studio using the following code:
library(foreign)
cdata = read.dta("http://www.ats.ucla.edu/stat/data/crime.dta")
summary(cdata)
However, the console is displaying the following error:
summary(cdata)
Error in summary(cdata) : object 'cdata' not found
Can anyone please help me out that why is this happening even though I'm just copying and pasting simple example from this link:
http://www.ats.ucla.edu/stat/r/dae/rreg.htm
Here's my sessioninfo():
sessionInfo()
R version 3.3.1 (2016-06-21)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] magrittr_1.5 htmltools_0.3.5 tools_3.3.1 Rcpp_0.12.7 stringi_1.1.1
[6] rmarkdown_1.0 knitr_1.14 stringr_1.1.0 digest_0.6.10 evaluate_0.9
I am trying to run a Shiny App from a Github repo and I get errors, whether with runUrl() or runGitHub().
The files of the Shiny App+the data were zipped using Winrar and stored with Git LFS. The folder is accessible here
Here.
Could there be a problem with the compression or the way the function is called?
> runGitHub("Climate-Change-1900-2014","OmaymaS",subdir = "Shiny_ClimateChange.zip")
Downloading https://github.com/OmaymaS/Climate-Change-1900-2014/archive/master.tar.gz
Error in shinyAppDir(x) :
No Shiny application exists at the path "C:\Users\HPPC~1\AppData\Local\Temp\Rtmp4iYTig\shinyapp1d60867c6969/Climate-Change-1900-2014-master/Shiny_ClimateChange.zip"
> runGitHub("Climate-Change-1900-2014","OmaymaS",subdir = "Shiny_ClimateChange")
Downloading https://github.com/OmaymaS/Climate-Change-1900-2014/archive/master.tar.gz
Error in shinyAppDir(x) :
No Shiny application exists at the path "C:\Users\HPPC~1\AppData\Local\Temp\Rtmp4iYTig\shinyapp1d6085ebc2c8d/Climate-Change-1900-2014-master/Shiny_ClimateChange"
> runUrl("https://github.com/OmaymaS/Climate-Change-1900-2014/blob/master/Shiny_ClimateChange.zip",filetype = ".zip")
Downloading https://github.com/OmaymaS/Climate-Change-1900-2014/blob/master/Shiny_ClimateChange.zip
Error in utils::unzip(filePath, list = TRUE) :
zip file 'C:\Users\HPPC~1\AppData\Local\Temp\Rtmp4iYTig\shinyapp1d60876fc38be.zip' cannot be opened
sessionInfo()
R version 3.2.1 (2015-06-18)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 8 x64 (build 9200)
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] curl_0.9.7 devtools_1.11.1 shiny_0.13.2 broom_0.4.1 RMySQL_0.10.6 DBI_0.3.1
loaded via a namespace (and not attached):
[1] Rcpp_0.12.5 magrittr_1.5 mnormt_1.5-4 xtable_1.8-2 lattice_0.20-31 R6_2.1.2
[7] stringr_1.0.0 plyr_1.8.4 dplyr_0.4.3 tools_3.2.1 parallel_3.2.1 grid_3.2.1
[13] nlme_3.1-120 psych_1.6.4 withr_1.0.1 htmltools_0.3.5 yaml_2.1.13 assertthat_0.1
[19] digest_0.6.9 tibble_1.0 reshape2_1.4.1 tidyr_0.5.1 rsconnect_0.4.3 memoise_1.0.0
[25] mime_0.4 rmarkdown_0.9.2 stringi_1.1.1 jsonlite_0.9.21 httpuv_1.3.3
I am trying to install a package from github in R but am getting an error I havent been able to solve.
>devtools::install_github("hadley/multidplyr")
Downloading GitHub repo hadley/multidplyr#master
Error in curl::curl_fetch_memory(url, handle = handle) :
SSL connect error
This is on a 64bit Windows 7 enterprise machine. I tried to turn off verificaiton of the peer's ssl certificate with the following:
set_config( config( ssl_verifypeer = 0L ) )
This didn't change the error message unfortunately. Any help would be greatly appreciated.
> sessionInfo()
R version 3.2.2 (2015-08-14)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
other attached packages:
[1] httr_1.0.0
loaded via a namespace (and not attached):
[1] R6_2.1.1 magrittr_1.5 tools_3.2.2 curl_0.9.4
[5] memoise_0.2.1 stringi_1.0-1 stringr_1.0.0 digest_0.6.8
[9] devtools_1.9.1
I followed the instruction on the Github. It returned me an error like this:
install_github("shinyTable", "trestletech")
Downloading github repo trestletech/shinyTable#master
Error in curl::curl_fetch_memory(url, handle = handle) :
Timeout was reached
In addition: Warning message:
Username parameter is deprecated. Please use trestletech/shinyTable
Then, I tried to download the repo zip file and installed the shinyTable from local zip file in R studio. After that, I library(shinyTable). It return me an error.
> install.packages("D:/UserData/xxxx/Downloads/shinyTable-master.zip", repos = NULL)
Installing package into ‘D:/UserData/xxxx/Documents/R/win-library/3.2’
(as ‘lib’ is unspecified)
> library(shinyTable)
Error in library(shinyTable) : there is no package called ‘shinyTable’
This is sessionInfo() result:
R version 3.2.1 (2015-06-18)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] shinyRGL_0.1.0 devtools_1.8.0 rJava_0.9-7
loaded via a namespace (and not attached):
[1] rgl_0.95.1247 Rcpp_0.12.0 digest_0.6.8 mime_0.3 R6_2.1.0 xtable_1.7-4 git2r_0.10.1
[8] magrittr_1.5 httr_1.0.0 stringi_0.5-5 curl_0.9.2 xml2_0.1.1 tools_3.2.1 stringr_1.0.0
[15] shiny_0.12.2 httpuv_1.3.3 rversions_1.0.2 htmltools_0.2.6 tcltk_3.2.1 memoise_0.2.1
Does anyone know the reason and tell me how to install it? Thank you.
I had similar issues recently. Can you try this:
library(devtools)
install_git("https://github.com/trestletech/shinyTable")
I am working with large datasets in R and some of the computations are too heavy for my machine in terms of RAM (cannot allocate vector of size n Mb).
sessionInfo()
R version 3.1.2 (2014-10-31)
Platform: x86_64-w64-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United Kingdom.1252
[3] LC_MONETARY=English_United Kingdom.1252 LC_NUMERIC=C
[5] LC_TIME=English_United Kingdom.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] MASS_7.3-35 lubridate_1.3.3 nlstools_1.0-0 stringr_0.6.2 numbers_0.5-2 plyr_1.8.1
[7] simecol_0.8-4 deSolve_1.11 Quandl_2.4.0 xts_0.9-7 zoo_1.7-11 data.table_1.9.4
[13] RODBC_1.3-10
loaded via a namespace (and not attached):
[1] bitops_1.0-6 chron_2.3-45 digest_0.6.8 grid_3.1.2 lattice_0.20-29 memoise_0.2.1
[7] Rcpp_0.11.4 RCurl_1.95-4.5 reshape2_1.4.1 RJSONIO_1.3-0 tools_3.1.2
I have access to an Amazon EC2 external server with up to 30 GB RAM which should be enough. My question is how I can run an R script on this external server using my local machine? Is there a function for this?
you would have to put script on the external machine and then run it:
ssh user_name#123.321.123.123 'my_script.r'
Much nicer way of doing that would be to use RStudio server.