I installed dotnet-sdk in Deepin(base Debian),but when I run "dotnet restore" that output "Segmentation fault".
Install .NET Core SDK document (https://www.microsoft.com/net/core#linuxdebian)
Command Line:
root#ylooq:~/soft$ cd ../
root#ylooq:~$ mkdir hello
root#ylooq:~$ cd hello/
root#ylooq:~/hello$ ls
root#ylooq:~/hello$ dotnet new
Created new C# project in /home/ylooq/hello.
root#ylooq:~/hello$ dotnet restore
log : Restoring packages for /home/ylooq/hello/project.json...
Segmentation fault
root#ylooq:~/hello$ ls
Program.cs project.json
I assume that you are using deepin 15 which is based on Debian Unstable branch.
Dotnet core depends on old versions of libcurl3 and the issue causes libssl1.0.0 library, which comes with libcurl3.
This is a list of packages that dotnet-sdk-2.0.0-preview2(for Debian) depends on:
libc6 (>= 2.14), libcurl3 (>= 7.16.2), libgcc1 (>= 1:4.1.1),
libgssapi-krb5-2 (>= 1.10+dfsg~), liblttng-ust0, libstdc++6 (>= 4.8),
libunwind8, libuuid1 (>= 2.16), zlib1g (>= 1:1.1.4), libssl1.0.0
In Debian 8(jessie) you can find these packages. Please try adding debian jessie repo to sources.list:
deb http://ftp.debian.org/debian/ jessie main non-free contrib
deb-src http://ftp.debian.org/debian/ jessie main non-free contrib
These links might be helpful to you since you might have to use apt-pinning :) in order to download older versions of packages:
Apt pinning
Issue of libcurl3
Related
I'm having trouble installing R from a homebrew formula on our Intel garbage can mac pro at work. I was having trouble installing tidyverse from source code so I removed and have been attempting to reinstalling R, as I thought it might have been a version mismatch somewhere.
I used
brew install R
and after a bunch of output where it's downloading other packages, I get back the following
==> Installing dependencies for r: libpng, freetype, fontconfig, gettext, libffi, pcre, glib, pkg-config, libpthread-stubs, xorgproto, libxau, libxdmcp, libxcb, libx11, libxext, libxrender, lzo, pixman, cairo, gmp, isl, mpfr, libmpc, lz4, xz, zstd, gcc, jpeg-turbo, openblas, pcre2, readline, ca-certificates, openssl#1.1 and tcl-tk
==> Installing r dependency: libpng
Unknown option: -C
usage: git [--version] [--help] [-c name=value]
[--exec-path[=<path>]] [--html-path] [--man-path] [--info-path]
[-p|--paginate|--no-pager] [--no-replace-objects] [--bare]
[--git-dir=<path>] [--work-tree=<path>] [--namespace=<name>]
<command> [<args>]
Error: Command failed with exit 129: git
Is this in fact a git error? What is the -C command?
Things I've tried:
removing and reinstalling command line tools
removing and reinstalling Homebrew
My machine:
Mac Pro (Late 2013)
2.7 GHz 12-Core Xeon E5
Thanks!
Sam
I think it tries to use an old version of git at /usr/bin/git, but you need to run brew install git to install a newer version of git to /usr/local/bin/git.
If /usr/local/bin/ isn't on your PATH before /usr/bin/, then you can add a line like this to ~/.bash_profile:
export PATH=/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin
However /usr/local/bin is included in /etc/paths by default, so it should be added to PATH by programs that run path_helper (like Terminal and iTerm 2 but not Script Editor or Emacs.app).
I am trying to configure and build lzma version 5.0.3 or higher on CentOS 6. I try install R version 3.5.2.
./configure --enable-R-shlib
But this error
Checking if lzma version >= 5.0.3... no
I installed lzma version 4.999.
There is no 5.x.x version package available for CentOS 6
They are having beta version at 4.9.9
Click to check
I suggest you to upgrade your CentOS 6 to CentOS 7
And then you will get support in OS to install latest distribution of this and other packages
sudo yum install xz
And also you can go to this link and download it manually and install it us
sudo rpm -i {package}
R 3.5.2 is available in EPEL repository.
Just install it from packages:
yum install epel-release
yum install R
I am trying to use the parallelization with mpi/openmdao.
I have tried on various ubuntu computers as well as ubuntu bash on windows (a windows 10 feature)
The dependencies work fine independently (i.e. import petsc4py and import mpi4py works fine and I can run the tests of these similar to the links: https://openmdao.readthedocs.io/en/1.7.3/getting-started/mpi_linux.html &
http://mpi4py.scipy.org/docs/usrman/install.html)
But the Paralel Group code in the openmdao 2.2. manual does not work.
For each attempt (varying computers) i seem to get another error most of them seemed like compatibility errors (i.e. I install petsc4py which breaks numpy or mpi4py installation causing proble in the existing openmdao core. )
On some computers I had my own openmpi and petsc installed but conda install command already installs those as far as I see.
Eventually I have tried these steps on a newly started amazon instance
but had similar problems.
sudo apt-get install build-essential
wget http://repo.continuum.io/archive/Anaconda3-5.2.0-Linux-x86_64.sh
bash Anacond*
sudo apt-get install libibnetdisc-dev
sudo apt-get install libblas-dev libatlas-dev liblapack-dev
conda install mpi4py
conda install -c conda-forge petsc4py
if i check ''conda list'' onone of the computers the abbreviated output is ;
mpi 1.0 mpich conda-forge
mpi4py 3.0.0 py36_mpich_1 conda-forge
mpich 3.2.1 1 conda-forge
mpich2 1.4.1p1 0 anaconda
mpmath 1.0.0 py36hfeacd6b_2
msgpack-python 0.5.1 py36h6bb024c_0
multipledispatch 0.4.9 py36h41da3fb_0
mumps 5.0.2 blas_openblas_208 [blas_openblas]
conda-forge
numpy 1.14.3 py36_blas_openblas_200 [blas_openblas] conda-forge
numpydoc 0.7.0 py36h18f165f_0
openblas 0.2.20 8 conda-forge
openmdao 2.2.1 <pip>
openpyxl 2.4.10 py36_0
openssl 1.0.2o 0 conda-forge
petsc 3.9.1 blas_openblas_0 [blas_openblas]
conda-forge
petsc4py 3.9.1 py36_0 conda-forge
pexpect 4.3.1 py36_0
pickleshare 0.7.4 py36h63277f8_0
pillow 5.0.0 py36h3deb7b8_0
pip 10.0.1 <pip
On the same system if try to run
mpirun -n 2 python my_par_model.py
based on the manual code this is what i get
Does anyone have a suggestion where it could be failing or what steps i could follow for ubuntu implementation of anconda/openmdao/petsc/mpi4py and succesful run of paralel openmdao ?
You could take a look at the installation implementation for linux that exists in our .travis.yml file? https://github.com/OpenMDAO/OpenMDAO/blob/master/.travis.yml
This works for installing and testing OpenMDAO from scratch on Trusty Tahr instances on Travis CI. One difference I see at first glance would be our use of pip to install mpi and PETSc into the conda-installed python.
I think MPI compatibility was the main issue. I was not aware that it had to be openmpi and indeed conda install command installs the mpich and possibly causing a problem with openmdao.
I will continue doing more tests but for a working system starting from a brand new installation of ubuntu-16.04.4-desktop-amd64.iso I followed these steps;
(Steps that take time are the openmpi installation and petsc4py pip instalattion.)
1 ) For some dependencies (taken from https://gist.github.com/mrosemeier/088115b2e34f319b913a)
sudo apt-get install libibnetdisc-dev
sudo apt-get install libblas-dev libatlas-dev liblapack-dev
2) Download/Install OpenMPI (mostly taken from http://lsi.ugr.es/jmantas/pdp/ayuda/datos/instalaciones/Install_OpenMPI_en.pdf)
wget https://download.open-mpi.org/release/open-mpi/v3.1/openmpi-3.1.0.tar.gz
tar -xzf openmpi-3.1.0.tar.gz
cd openmpi-*
./configure --prefix="/home/$USER/.openmpi"
make
sudo make install
echo export PATH="$PATH:/home/$USER/.openmpi/bin" >> /home/$USER/.bashrc
echo export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/home/$USER/.openmpi/lib/" >> /home/$USER/.bashrc
3) MINICONDA & Rest (mostly taken from https://github.com/OpenMDAO/OpenMDAO/blob/master/.travis.yml)
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
sh Minicond* # agree to add to the path etc.
conda install --yes python=3.6
conda install --yes numpy==1.14 scipy=0.19.1 nose sphinx mock swig pip;
pip install --upgrade pip;
pip install mpi4py
pip install petsc4py==3.9.1
#petsc4py Gives an error failed building wheel for petsc but then installs petsc itself, afterwards, petsc4py is also installed
sudo apt install git # in the cases git does not exist
# not sure why we need this part but i followed
pip install redbaron;
pip install git+https://github.com/OpenMDAO/testflo.git;
pip install coverage;
pip install git+https://github.com/swryan/coveralls-python#work;
# pyoptsparse and openmdao
git clone https://github.com/mdolab/pyoptsparse.git;
cd pyoptsparse;
python setup.py install;
cd ..;
conda install --yes matplotlib;
git clone http://github.com/OpenMDAO/OpenMDAO
cd OpenMDAO
pip install .
# optional
conda install spyder
4) Check the versions
mpirun --version : Open MPI 3.1.0
python --version : 3.6.5
pip --version :
pip 10.0.1 from /home/user/miniconda3/lib/python3.6/site-packages/pip (python 3.6)
conda list : (note that there is no mpich or similar in the conda list)
openmdao 2.2.1 <pip>
mpi4py 3.0.0 <pip>
petsc 3.9.2 <pip>
petsc4py 3.9.1 <pip>
I'm trying to install php unit version 6.5.
I already have 7.0.1 install and I have attempted to install phpunit versions 6.5 with:
brew install phpunit#6.5
Brew tells me that the older version is installed but phpunit --version is 7.0.1.
Trying brew switch phpunit 6.5, I get the message:
Error: phpunit does not have a version "6.5" in the Cellar.
Versions available: 7.0.1
What steps do I need to take to switch versions to 6.5?
I've installed manually:
$ wget https://phar.phpunit.de/phpunit-6.5.phar
$ chmod +x phpunit-6.5.phar
$ sudo mv phpunit-6.5.phar /usr/local/bin/phpunit
$ phpunit --version
If I am not mistaking, this is because the current version is 6.5.6 and not just 6.5
If this fails, maybe try doing a manual install from their archived package, instructions can be found here
If you still don't succeed, you could also try with composer to manage your project packages
On Debian Jessie (8.8), the most up-to-date R package isn't enough for using some Jupyter-notebook functions (like rpy2), so I am trying to get R>=3.3 version. The current version is:
R version 3.1.1 (2014-07-10)
Here is an useful link provided by a stackoverflow user: https://cran.r-project.org/bin/linux/debian/, but even with it, I don't know how to get the newer R-version.
Would you help me please?
EDIT
Not sure if helps, but here is what I have in /etc/apt/sources.list
# deb cdrom:[Debian GNU/Linux 8 _Jessie_ - Official Snapshot amd64 LIVE/INSTALL Binary 20160315-14:54]/ jessie contrib main non-free
## Repositorio oficial de Debian GNU/Linux
deb http://ftp.debian.org/debian/ jessie main contrib non-free
deb http://security.debian.org/ jessie/updates main contrib non-free
deb-src http://security.debian.org/ jessie/updates main contrib non-free
~
You can upgrade r package from :
1) Backports repository : (the 3.3.3 version)
Add the following line to your sources.list:
deb http://deb.debian.org/debian jessie-backports main contrib non-free
Save then install r:
apt-get update
apt-get -t jessie-backports install r-base r-base-dev
2) CRAN repository (the 3.4.3 version)
Follow the steps described on the official documentation :
For a backport of R 3.4.3 to jessie, please add something like
deb http://<favourite-cran-mirror>/bin/linux/debian jessie-cran34/
to the file /etc/apt/sources.list on your computer. You need to substitute <favourite-cran-mirror> by one of the mirror URLs listed in the mirror list.
Secure APT
Before installing the package from CRAN repository , You need to import the singing key released by Johannes Ranke <jranke#uni-bremen.de> (see the secure-apt )
e,g:.
echo deb https://mirrors.sorengard.com/cran/bin/ldebian jessie-cran34/ >> /etc/apt/sources.list
apt-key adv --keyserver keys.gnupg.net --recv-key 'E19F5F87128899B192B1A2C2AD5F960A256A04AF'
apt-get update
apt-get install r-base r-base-dev