I want to install the "fume" package on my Windows machine. I tried this by giving the following command in the console:
install.packages("https://cran.r- project.org/src/contrib/Archive/fume/fume_1.0.tar.gz", repos = NULL, type ="source", INSTALL_opts = c('--no-lock'))
But then I get the following result:
* installing *source* package 'fume' ...
** package 'fume' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
Warning: package 'chron' was built under R version 3.3.1
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Warning in library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) :
there is no package called 'fume'
Error: loading failed
Execution halted
ERROR: loading failed
* removing '\\COMPANY.local/users$/NAME/R/win-library/3.3/fume'
Warning in install.packages :
running command '"F:/R/R-33~1.0/bin/x64/R" CMD INSTALL --no-lock -l "\\COMPAMY.local\users$\NAME\R\win-library\3.3" "C:/Users/NAME~1.NAME/AppData/Local/Temp/RtmpKY2Wsg/downloaded_packages/fume_1.0.tar.gz"' had status 1
Warning in install.packages :
installation of package ‘C:/Users/NAME~1.NAME/AppData/Local/Temp/RtmpKY2Wsg/downloaded_packages/fume_1.0.tar.gz’ had non-zero exit status
Any ideas on how to install this package correctly?
Related
I am trying to install the RADammi package on R 3.6 using "devtools", however I receive this error:
Installing package into ‘C:/Users/taham/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
ERROR: dependencies 'Biostrings', 'IRanges' are not available for package 'RADami'
* removing 'C:/Users/taham/Documents/R/win-library/3.6/RADami'
Error: Failed to install 'unknown package' from URL:
(converted from warning) installation of package > ‘C:/Users/taham/AppData/Local/Temp/RtmpycMnQ2/remotes11246cb38f0/RADami’ had non-zero exit status.
It is an old package that has been removed from CRAN
https://rdrr.io/cran/RADami/
how should I install it?
update:
I finally could manage to install the two dependencies using below command:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Biostrings")
BiocManager::install("IRanges")
I have downloaded the zip archived RADami file and tried to install the package, I receive this fetal error again:
install.packages("C:/Users/taham/Downloads/RADami_1.1-2.tar.gz", repos = NULL, type = "source")
Installing package into ‘C:/Users/taham/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
installing source package 'RADami' ...
** package 'RADami' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: objects 'c.phylo', 'c.multiPhylo' are not exported by 'namespace:ape'
Execution halted
ERROR: lazy loading failed for package 'RADami'
removing 'C:/Users/taham/Documents/R/win-library/3.6/RADami'
Warning in install.packages :
installation of package ‘C:/Users/taham/Downloads/RADami_1.1-2.tar.gz’ had non-> zero exit status
I get the same error when using devtools
It sounds like you need to first install "IRanges" and "Biostrings" from BioConductor:
library(devtools)
install_bioc("IRanges")
install_bioc("Biostrings")
Though these have other dependencies such as "S4Vector" which you may need to install manually also.
Then you should be able to install RADami:
install_url("https://cran.r-project.org/src/contrib/Archive/RADami/RADami_1.0-3.tar.gz")
I also had this issue with installing from the CRAN archive, but was successfully able to install it from the developer's Github. In R:
library(devtools)
install_github("andrew-hipp/RADami")
I get the following trying to install gpclib package in R 3.6.2:
Package which is only available in source form, and may need
compilation of C/C++/Fortran: ‘gpclib’
These will not be installed
I have already installed Rtools.
I tried with the code:
install.packages("gpclib")
Trying with
install.packages("gpclib", type="source")
the message is:
installing *source package 'gpclib' ...
** package 'gpclib' successfully unpacked and MD5 sums checked **
using staged installation ** libs *** arch - i386 Warning in system(cmd) :
'make' not found ERROR: compilation failed for package 'gpclib' *
removing 'C:/Users/Juan/Documents/R/win-library/3.6/gpclib'
Warning message: In install.packages("gpclib", type = "source") :
installation of package ‘gpclib’ had non-zero exit status*
I am trying to install an archived R package, SciencesPo, but it's not installing, even after installing the dependencies. The following is the code and the messages that follow
install.packages("C:\Users\Overman\Downloads\SciencesPo_1.4.1.tar.gz", repos = NULL, type = "source")
Installing package into ‘C:/Users/Overman/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
* installing source package 'SciencesPo' ...
** package 'SciencesPo' successfully unpacked and MD5 sums checked
** libs
*** arch - i386
Warning in system(cmd) : 'make' not found
ERROR: compilation failed for package 'SciencesPo'
* removing 'C:/Users/Overman/Documents/R/win-library/3.5/SciencesPo'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘C:/Users/Overman/Downloads/SciencesPo_1.4.1.tar.gz’ had non-zero exit status
Installing Rtools solved the problem.
I have a serious problem about R package installation in windows where I haven't got the administrator priveleges. For example, to install ggplot2 I did :
install.packages("C:/Users/Rasengan/Downloads/ggplot2_1.0.0.tar.gz", repos = NULL, type="source")
I get this error message :
ERROR: dependencies 'plyr', 'gtable', 'reshape2', 'scales', 'proto' are not available for package 'ggplot2'
* removing 'C:/Program Files/R/R-3.1.1/library/ggplot2'
Warning messages:
1: running command '"C:/PROGRA~1/R/R-31~1.1/bin/i386/R" CMD INSTALL -l "C:\Program Files\R\R-3.1.1\library" "C:/Users/Rasengan/Downloads/ggplot2_1.0.0.tar.gz"' had status 1
2: In install.packages("C:/Users/Rasengan/Downloads/ggplot2_1.0.0.tar.gz", :
installation of package ‘C:/Users/Rasengan/Downloads/ggplot2_1.0.0.tar.gz’ had non-zero exit status
So the problem come from the pakage which depends ggplot2, what I tried is to install the different packages ('plyr', 'gtable', 'reshape2', 'scales', 'proto') one by one but the process is endless because 'plyr' depended of many or packages ...
Please could you help me, because I need shiny, ggplot2 and rCharts for my work.
Thank you in advance!
PS: the proto package doesn't depend of an other package, so I installed it easly :
> install.packages("C:/Users/Rasengan/Downloads/proto_0.3-10.tar.gz", repos = NULL, type="source")
* installing *source* package 'proto' ...
** package 'proto' successfully unpacked and MD5 sums checked
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'proto.Rnw'
'protoref.Rnw'
** testing if installed package can be loaded
* DONE (proto)
I was trying to run a simple code on ggplot2 and got the following error:
source("u1.txt")
Error in library(ggplot2) : there is no package called ‘ggplot2’
Error : package ‘foreign’ was built before R 3.0.0: please re-install it
ERROR: lazy loading failed for package ‘maptools’
* removing ‘/home/shivangi/R/i686-pc-linux-gnu-library/3.0/maptools’
* installing *source* package ‘multcomp’ ...
** package ‘multcomp’ successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (multcomp)
ERROR: dependencies ‘plyr’, ‘reshape2’, ‘scales’ are not available for package ‘ggplot2’
* removing ‘/home/shivangi/R/i686-pc-linux-gnu-library/3.0/ggplot2’
The downloaded source packages are in
‘/tmp/RtmpOGWrr4/downloaded_packages’
Warning messages:
1: In install.packages("ggplot2", dep = TRUE) :
installation of package ‘Rcpp’ had non-zero exit status
2: In install.packages("ggplot2", dep = TRUE) :
installation of package ‘plyr’ had non-zero exit status
3: In install.packages("ggplot2", dep = TRUE) :
installation of package ‘testthat’ had non-zero exit status
4: In install.packages("ggplot2", dep = TRUE) :
installation of package ‘reshape2’ had non-zero exit status
5: In install.packages("ggplot2", dep = TRUE) :
installation of package ‘scales’ had non-zero exit status
6: In install.packages("ggplot2", dep = TRUE) :
installation of package ‘Hmisc’ had non-zero exit status
7: In install.packages("ggplot2", dep = TRUE) :
installation of package ‘maptools’ had non-zero exit status
8: In install.packages("ggplot2", dep = TRUE) :
installation of package ‘ggplot2’ had non-zero exit status
I had the same error running ggplot this evening, essentially you need to try to install all the dependencies that failed. For me it was "scales", then "munsell" and then finally (the actual problem) "colorspace" which hadn't be updated since I upgraded to 3.1.1. In your case, it looks like you want to first try installing "foreign" and then try ggplot2 again. Keep loading dependencies that error manually until you find the real problem.
You can specify that the install.packages() call also install all dependent packages:
if(!require(ggplot2)) install.packages('dplyr',dependencies = TRUE)
the above code first checks to see if ggplot2 package is loaded, if not it tries to load the apckage. If it cannot load the package, it then tries to install the package and all of package its dependencies.
With RTools installed, I got this to work:
install.packages("ggplot2", type="source",dependencies = TRUE)
Compiled a few packages...
Make sure your PATH is updated to point to RTools properly, i.e. includes
c:\Rtools\bin;c:\Rtools\gcc-4.6.3\bin
at the front.
I am using Rtools32.exe