I have a serious problem about R package installation in windows where I haven't got the administrator priveleges. For example, to install ggplot2 I did :
install.packages("C:/Users/Rasengan/Downloads/ggplot2_1.0.0.tar.gz", repos = NULL, type="source")
I get this error message :
ERROR: dependencies 'plyr', 'gtable', 'reshape2', 'scales', 'proto' are not available for package 'ggplot2'
* removing 'C:/Program Files/R/R-3.1.1/library/ggplot2'
Warning messages:
1: running command '"C:/PROGRA~1/R/R-31~1.1/bin/i386/R" CMD INSTALL -l "C:\Program Files\R\R-3.1.1\library" "C:/Users/Rasengan/Downloads/ggplot2_1.0.0.tar.gz"' had status 1
2: In install.packages("C:/Users/Rasengan/Downloads/ggplot2_1.0.0.tar.gz", :
installation of package ‘C:/Users/Rasengan/Downloads/ggplot2_1.0.0.tar.gz’ had non-zero exit status
So the problem come from the pakage which depends ggplot2, what I tried is to install the different packages ('plyr', 'gtable', 'reshape2', 'scales', 'proto') one by one but the process is endless because 'plyr' depended of many or packages ...
Please could you help me, because I need shiny, ggplot2 and rCharts for my work.
Thank you in advance!
PS: the proto package doesn't depend of an other package, so I installed it easly :
> install.packages("C:/Users/Rasengan/Downloads/proto_0.3-10.tar.gz", repos = NULL, type="source")
* installing *source* package 'proto' ...
** package 'proto' successfully unpacked and MD5 sums checked
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'proto.Rnw'
'protoref.Rnw'
** testing if installed package can be loaded
* DONE (proto)
Related
I have been trying to install the SDMTools package from github, using devtools, and have also tried to install from the Cran archive, below is the code for installing through github:
devtools::install_github("jjvanderwal/SDMTools")
this is then the code to try and install from Cran archive:
install.packages("https://cran.r-project.org/src/contrib/Archive/SDMTools/SDMTools_1.1-221.2.tar.gz", repos = NULL, type="source")
Both of these produce the same error,
* installing *source* package 'SDMTools' ...
** package 'SDMTools' successfully unpacked and MD5 sums checked
** using staged installation
** libs
Warning in system(cmd) : 'make' not found
ERROR: compilation failed for package 'SDMTools'
* removing 'C:/Users/micha/AppData/Local/R/win-library/4.2/SDMTools'
Warning in install.packages :
installation of package ‘C:/Users/micha/AppData/Local/Temp/Rtmps1CvqJ/downloaded_packages/SDMTools_1.1-221.2.tar.gz’ had non-zero exit status
If anyone would be able to help with any suggestions of what to try or any alternative methods, would be greatly appreciated!
I am currently working on version 4.2.1, (have also tried this on version 4.1.3).
I am trying to install the RADammi package on R 3.6 using "devtools", however I receive this error:
Installing package into ‘C:/Users/taham/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
ERROR: dependencies 'Biostrings', 'IRanges' are not available for package 'RADami'
* removing 'C:/Users/taham/Documents/R/win-library/3.6/RADami'
Error: Failed to install 'unknown package' from URL:
(converted from warning) installation of package > ‘C:/Users/taham/AppData/Local/Temp/RtmpycMnQ2/remotes11246cb38f0/RADami’ had non-zero exit status.
It is an old package that has been removed from CRAN
https://rdrr.io/cran/RADami/
how should I install it?
update:
I finally could manage to install the two dependencies using below command:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Biostrings")
BiocManager::install("IRanges")
I have downloaded the zip archived RADami file and tried to install the package, I receive this fetal error again:
install.packages("C:/Users/taham/Downloads/RADami_1.1-2.tar.gz", repos = NULL, type = "source")
Installing package into ‘C:/Users/taham/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
installing source package 'RADami' ...
** package 'RADami' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: objects 'c.phylo', 'c.multiPhylo' are not exported by 'namespace:ape'
Execution halted
ERROR: lazy loading failed for package 'RADami'
removing 'C:/Users/taham/Documents/R/win-library/3.6/RADami'
Warning in install.packages :
installation of package ‘C:/Users/taham/Downloads/RADami_1.1-2.tar.gz’ had non-> zero exit status
I get the same error when using devtools
It sounds like you need to first install "IRanges" and "Biostrings" from BioConductor:
library(devtools)
install_bioc("IRanges")
install_bioc("Biostrings")
Though these have other dependencies such as "S4Vector" which you may need to install manually also.
Then you should be able to install RADami:
install_url("https://cran.r-project.org/src/contrib/Archive/RADami/RADami_1.0-3.tar.gz")
I also had this issue with installing from the CRAN archive, but was successfully able to install it from the developer's Github. In R:
library(devtools)
install_github("andrew-hipp/RADami")
I boot up a clean instance of R Studio. I don't save my environments and I don't use an Rprofile file. I tried both commands:
install.packages("viridis")
install.packages("viridis", dependencies = TRUE)
and I get this error:
installing source package ‘viridis’ ...
** package ‘viridis’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading Error : object ‘cividis’ is not exported by 'namespace:viridisLite' ERROR: lazy loading failed for
package ‘viridis’
removing ‘/home/stackinator/Rlibs/viridis’ Warning in install.packages : installation of package ‘viridis’ had non-zero exit status
Try the following:
if (!require("devtools")) install.packages("devtools")
devtools::install_github("sjmgarnier/viridis")
I am not sure why downloading it from CRAN didn't work, but devtools::install_github() downloads the source package from the repository rather than the bundled package that you get from CRAN with install.packages()
For more, check out this discussion from R Packages book:
http://r-pkgs.had.co.nz/package.html
I want to install the "fume" package on my Windows machine. I tried this by giving the following command in the console:
install.packages("https://cran.r- project.org/src/contrib/Archive/fume/fume_1.0.tar.gz", repos = NULL, type ="source", INSTALL_opts = c('--no-lock'))
But then I get the following result:
* installing *source* package 'fume' ...
** package 'fume' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
Warning: package 'chron' was built under R version 3.3.1
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Warning in library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) :
there is no package called 'fume'
Error: loading failed
Execution halted
ERROR: loading failed
* removing '\\COMPANY.local/users$/NAME/R/win-library/3.3/fume'
Warning in install.packages :
running command '"F:/R/R-33~1.0/bin/x64/R" CMD INSTALL --no-lock -l "\\COMPAMY.local\users$\NAME\R\win-library\3.3" "C:/Users/NAME~1.NAME/AppData/Local/Temp/RtmpKY2Wsg/downloaded_packages/fume_1.0.tar.gz"' had status 1
Warning in install.packages :
installation of package ‘C:/Users/NAME~1.NAME/AppData/Local/Temp/RtmpKY2Wsg/downloaded_packages/fume_1.0.tar.gz’ had non-zero exit status
Any ideas on how to install this package correctly?
I tried to install the package statDA without success.These are the last rows of the message I received in RStudio:
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (geoR)
ERROR: dependency ‘MBA’ is not available for package ‘StatDA’
* removing ‘/home/matteo/R/i686-pc-linux-gnu-library/3.0/StatDA’
Warning in install.packages :
installation of package ‘StatDA’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpwirNxx/downloaded_packages’
I also tried to install the MBA package but actually the same error appeared.
I'm on a Ubuntu (12.04) machine running R 3.0.