I just installed Miniconda and the R Essentials bundle on my Windows 10 machine, following the instructions given here. Everything went swimmingly until I opened up an Anaconda command prompt and entered jupyter notebook and got an error. I then used ipython notebook which worked, so okay, no problem there.
However, after creating a new folder and trying to create a new R notebook within that folder, my Jupyter tabs started to hang. Whenever I try to do something, whether it is rename the notebook, run a block of code, basically anything, all of the Jupyter tabs sit there loading endlessly saying "Waiting for localhost..."
I try stopping the server and restarting it, but every time I try to do anything I get the same result. I also tried changing the port and running the command prompt as administrator--same result. I am using Chrome, which shouldn't be an issue.
Any ideas? I was really excited about using a Jupyter notebook to keep track of my analyses in R, but if I can't even get it to function out of the box I'll have to find a better solution.
Related
I am currently setting up a Python data-science client for SQL Server Machine Learning Services following this guide: https://learn.microsoft.com/en-us/sql/machine-learning/python/setup-python-client-tools-sql?view=sql-server-ver15
Unfortunately, running Jupyter notebooks for this distribution does not seem to work for me: Typing .\Scripts\jupyter-notebook in the distribution folder, or directly running jupyter-notebook.exe from the Scripts sub-folder does not start Jupyter. In the terminal, the command exits with no ouput.
Afterwards, https://localhost:8889/tree is not reachable as should be the case according to the tutorial above.
Any suggestions? (I already checked https://jupyter-notebook.readthedocs.io/en/stable/troubleshooting.html for solutions). Thank you!
Update: At least .\Scripts\jupyter-console is running, though it is not the same experience.
some cases .\Scripts\jupyter-notebook will not work fine because of the installation issues. As anaconda is having both commercial and enterprise editions, issues will raise.
Instead use the following procedure for cool opening of Jupyter-Notebook in anaconda distribution
Click on Start menu
Type Jupyter
Click on jupter icon which is visible in search results
Jupyter CMD will start running and make it minimized instead closing it. It will open the UI of jupyter notebook in browser.
Jupyter notebook for SQL
Check the documentation link which is available in link which is the configuration of jupyter notebook for SQL.
Document Credit: Rajendra Gupta
https://localhost:8889/tree
I'm having a strange issue. I have a problem with reindexing when i call my script with a jupyter notebook but it work fine when i call it directly using pycharm.
The first time i execute the notebook after i just started jupyter notebook it work but then it never work again. And it give me this error :
ValueError: cannot reindex from a duplicate axis
I suspect a problem between pandas and jupyter notebook. Because this error never appear when i use pycharm.
Do you have any idea on how i can fix this problem so that i can call my script from a jupyter notebook ?
I'm using the same conda env for both the jupyter notebook and pycharm.
I fond that Jupiter-notebook does not re-import the modules every time you execute it.
I had a problem with a variable that was not overwrite I changed the constructor of my script to be able to rewrite it and it work fine now.
Installed WSL on Windows 10.
Installed Anaconda according to the Anaconda documentation with the following commands:
bash Anaconda3-2020.02-Linux-x86_64.sh
source ~/.bashrc
You can see the '(base)' in the beginning of each command input line, indicating the conda is activated.
Then I run jupyter notebook by typing:
jupyter notebook
Then I see the following changes as shown in the screen record.
Briefly, the WSL terminal window showed some information very quickly, but is changed to the windows powershell window before you could even tell the information that showed up. I know those information should contain a file and url for opening the jupyter notebook in the web browser. But they flashed out so quickly. Does anyone know why this happens?
Here is a dynamic graph of the Screen record of this issue:
Solved:
1. Wait for a bit more time on the windows cmd and the jupyter notebook running information will show up, where includes the url to open jupyter notebook in the web browser.
OR
Open up another wsl terminal, activate the same environment and type jupyter notebook list, which will show the current running jupyter notebook server. The url is also can be found there.
I'm trying to open a jupyter notebook and it takes a long time and I see at the bottom it's trying to load various [MathJax] extension, e.g. at the bottom left of the chrome browser it says:
Loading [MathJax]/extensions/safe.js
Eventually, the notebook loads, but it's frozen and then at the bottom left it keeps showing that it's trying to load other [MathJax] .js files.
Meanwhile, the "pages unresponsive do you want to kill them" pop up keeps popping up.
I have no equations or plots in my notebook so I can't understand what is going on. My notebook never did this before.
I googled this and some people said to delete the ipython checkpoints. Where would those be? I'm on Mac OS and using Anaconda.
conda install -c conda-forge nbstripout
nbstripout filename.ipynb. Make sure that there is no whitespace in the filename.
I had a feeling that the program in my Jupyter notebook was stuck trying to produce some output, so I restarted the kernel and cleared output and that seemed to do the trick!
If Jupyter crashes while opening the ipynb file, try "using nbstripout to clear output directly from the .ipynb file via command line"(bndwang). Install with pip install nbstripout
I was having the same problem with jupyter notebook. My recommendations to you are as follows:
First, check the size of the .ipynb file you are trying to open. Probably the file size is in MB and is large. One of the reasons for this might be the output of a dataset that you previously displayed all rows.
For example;
In order to check the dataset, sometimes I use pd.set_option('display.max_rows', None) instead of the .head() function. And so I view all the rows in the data set.
The large number of outputs increases the file size, making the notebook slower. Try to delete such outputs.
I think this will solve your problem.
Here restarting your kernel will not help. Instead use nbstripout to strip the output from command line.
Run this command -> nbstripout FILE.ipynb
Install nbstripout if it is not there
https://pypi.org/project/nbstripout/
It happened to me the time I decided to print a matrix for 100000 times. The notebook file became 150MB and Jupyter (in Chrome) was not able to open it: it said all the things you experienced and then the page died saying it was "OutOfMemory".
I solved the issue opening it in Visual Studio Code, there is a button "Clear All Output", then I saved the notebook again and it was back to some hundreds of KB, which I could open normally.
If you don't have Visual Studio Code installed, you can open the notebook with another editor (gedit if you use Linux or Notepad++ in Windows) and try to delete the output cells. This is more tricky since you have to pay a lot of attention in what you are deleting, otherwise the notebook will stop working.
I recently downloaded Anaconda on my Windows and am trying to use the Jupyter notebook. However, when I open Jupyter, the it seems to be full of odd files.
Odd Files
I have tried to change the Jupyter home directory by changing the "Start in" in the Jupyter file but the home directory remained unchanged.
Start in
There are two problems here. The first being that there are a large number of files and running the jupyter notebook makes my computer run slow. Second that when I try to add folders, I get the error that I do not have ownership to do so.
Simple fix. I was previously running jupyter from the command prompt but running it through the anaconda navigator fixed it.