I'd like to install this Package from bitbucket: https://bitbucket.org/mkuhn/parallelrandomforest/
But this is what happends if i run install_bitbucket
> devtools::install_bitbucket("mkuhn/parallelrandomforest")
Downloading bitbucket repo mkuhn/parallelrandomforest#master
Error in download(dest, src, auth) : client error: (404) Not Found
If i run the command from ?install_bitbucket namely install_bitbucket("dannavarro/lsr-package") it works perfectly.
Any ideas
R version 3.1.2 (2014-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=C LC_COLLATE=C LC_MONETARY=C LC_MESSAGES=C
[7] LC_PAPER=C LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=C LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] RCurl_1.95-4.5 bitops_1.0-6 devtools_1.7.0 httr_0.6.1 stringr_0.6.2 tools_3.1.2
Usually the master branch should be called master, but they managed to call it default.
devtools::install_bitbucket("mkuhn/parallelrandomforest#default")
Related
I am trying to install some packages (quite basic ones actually) for R 3.6, but I'm getting a fairly strange error message from BiocManager::install():
BiocManager::install("XML", destdir = "/my/dir/R/x86_64-pc-linux-gnu-library/3.6/")
error: could not load shared object '/my/dir/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-XML/00new/XML/libs/XML.so':
libicui18n.so.58: Could not open shared object file: No such file or directory
(Translated from french - could be approximate)
Does this mean that R can't write in /my/dir/R/x86_64-pc-linux-gnu-library/3.6/? That would be my first idea but I really don't know.
EDIT:
Here is my session info:
R version 3.6.2 (2019-12-12)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 10 (buster)
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.8.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.8.0
locale:
[1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C LC_TIME=C
[4] LC_COLLATE=fr_FR.UTF-8 LC_MONETARY=C LC_MESSAGES=fr_FR.UTF-8
[7] LC_PAPER=C LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocManager_1.30.10
loaded via a namespace (and not attached):
[1] compiler_3.6.2 tools_3.6.2
This is a configuration problem, there is a fix available at github.com/r-lib/xml2/issues/219.
I have a downloadHandler() in Shiny that generates an html document using R markdown. This document generates rgl plots, which are added to the document using hook_webgl. The application is running on a Shiny server. Everything works fine the first time the download button is used, but on the following occasions I get the error "You must enable Javascript to view this page properly". I am using rglwidgets, but I get the same issues using shinyRGL.
> sessionInfo()
R version 3.2.4 Revised (2016-03-16 r70336)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.4 LTS
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] shiny_0.13.2 rmarkdown_0.9.5 knitr_1.12.3 rglwidget_0.1.1434
[5] rgl_0.95.1441
loaded via a namespace (and not attached):
[1] htmlwidgets_0.6 magrittr_1.5 R6_2.1.2 tools_3.2.4
[5] htmltools_0.3.5 Rcpp_0.12.4 jsonlite_0.9.19 digest_0.6.9
[9] xtable_1.8-2 httpuv_1.3.3 mime_0.4
When I try to install xml2 on an RStudio server I get the following error:
xml2_url.cpp: In function ‘Rcpp::List url_parse(Rcpp::CharacterVector)’:
xml2_url.cpp:85: error: ‘struct _xmlURI’ has no member named ‘query_raw’
xml2_url.cpp:85: error: ‘struct _xmlURI’ has no member named ‘query_raw’
make: *** [xml2_url.o] Error 1
ERROR: compilation failed for package ‘xml2’
My session info is
> sessionInfo()
R version 3.1.1 (2014-07-10)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8
[6] LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] devtools_1.8.0 digest_0.6.8 git2r_0.10.1 grid_3.1.1 httr_0.6.1 memoise_0.2.1 RCurl_1.95-4.3 rversions_1.0.0 stringr_0.6.2
[10] tools_3.1.1 XML_3.98-1.1
The xml2 R-package perfectly installs on my macbook air...
I am using default command to install multicore package
install.packages('multicore','http://www.rforge.net/')
as written here http://www.rforge.net/multicore/files/ but I recieve warning:
install.packages('multicore','http://www.rforge.net/')
Warning in install.packages :
'lib = "http://www.rforge.net/"' is not writable
Would you like to use a personal library instead? (y/n) y
Warning in install.packages :
package ‘multicore’ is not available (for R version 3.1.2)
Does anybody know any solution to this? I can not use previous versions of R.
I would like to use mclapply function from that package.
Thanks for help.
My session info is:
> sessionInfo()
R version 3.1.2 (2014-10-31)
Platform: x86_64-redhat-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] stringi_0.4-1 ggplot2_1.0.0
loaded via a namespace (and not attached):
[1] colorspace_1.2-4 digest_0.6.8 grid_3.1.2 gtable_0.1.2
[5] MASS_7.3-35 munsell_0.4.2 plyr_1.8.1 proto_0.3-10
[9] Rcpp_0.11.3 reshape2_1.4.1 scales_0.2.4 stringr_0.6.2
[13] tools_3.1.2
Why do you need it?
Most of its functionality has been integrated into the parallel package which already comes with R. Have a look at its vignette, eg from within R via vignette() or else from here.
And the reason you cannot install 'multicore' is because it has been withdrawn by R Core, given how its functionality is (essentially entirely) in 'parallel' now.
I am updating a package qdap that had a single note on CRAN in its previous build, which was resolved.
In the qdap development version, under R 2.15.3, using --as-cran and --resave-data=best, I get the following note:
* checking R code for possible problems ... NOTE
Segmentation fault
Why is this segfault occurring (I'm somewhat new to Linux)? How can I find it? I googled this for sometime but I couldn't figure out what the problem is. I gather there's some sort of problem in my code but...
On Windows I get no notes.
I can provide more info if needed (though the GitHub repo is available).
Session Info:
R version 2.15.3 (2013-03-01)
Platform: i686-pc-linux-gnu (32-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8
[4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] pacman_0.2.0 XML_3.9-4
loaded via a namespace (and not attached):
[1] tools_2.15.3