I'm trying to work out a way to post into confluence a R statistical program Markdown file. So far I have converted the markdown to PDF and imported that but I would like to be able to embed the markdown page directly.
Thanks!
If you want to use Markdown in Confluence, it's quite possible using my free Markdown for Confluence plugin. Get it here: https://bitbucket.org/dvdsmpsn/markdown-for-confluence/downloads
Alternatively, Atlassian have also written a Markdown Macro.
Hopefully, some of this will be applicable to R Markdown.
conflr package will allow you to publish to confluence from Rstudio or render and upload Rmd to confluence.
Related
Very new to R. I need to make a PDF document using R markdown for a lab report.
How do I add images to a markdown?
You can include this in your .Rmd file:
I would also recommend you to take a look at this book (written by the authors of R Markdown) if you want to learn more.
I am making a presentation in latex (Oxygen Beamer Template) in the online latex editor Overleaf, it is the original template that overleaf is available to modify it, the idea is to be able to implement it in Rmarkdown. So my question is if there is any package in R or trick to be able to capture the result of latex as a presentation in Rmarkdown?
Anyway when I have an advance or discover something I share it in this same way.
Thanks for your time, regards!
I have been using .Rmarkdown files to create blog posts in R blogdown. The output of chunk of codes in .Rmarkdown documents are printed in the console and not in the document.
If instead I create a .rmd file, then previews are in window. RStudio Global options are set to show preview in window for RMarkdown documents.
Is this an expected behavior of .rmarkdown files?
Thanks
The differences between .Rmarkdown and .Rmd is explained here. The most relevant quote being:
In this book, we usually mean .Rmd files when we say “R Markdown documents,” which are compiled to .html by default. However, there is another type of R Markdown document with the filename extension .Rmarkdown. Such R Markdown documents are compiled to Markdown documents with the extension .markdown, which will be processed by Hugo instead of Pandoc.
More specific differences are explained in the book linked above.
How to integrate R code in markdown and then insert the plots in the rendered document?
I use the blogging engine Hakyll (http://jaspervdj.be/hakyll/).
It uses Pandoc as a back-end for rendering blog posts written in markdown.
There's even a special markdown flavor named R-markdown. It can be rendered to plain markdown using the knitr package.
Apparently the link provided directs to a page about R-markdown V2 which has its own package rmarkdown.
FYI I published a package that allows to compile Rmd posts in Hakyll:
https://hackage.haskell.org/package/hakyll-R
For the moment I write my blog post in Rmarkdown, and transform it in plain markdown with:
Rscript -e "library(knitr); knit('myPost.Rmd')
Then Hakyll can process it. More details here: http://www.corentindupont.info/blog/posts/Programming/2014-12-10-This-Blog.html.
I would be glad to know if this command can be integrated directly into Hakyll.
I am not sure if this type of question complies with the SO rules for well-defined questions ;) ... anyway:
I want to convert several R Sweave files (.Rnw) to R markdown files (.Rmd). Jeromy Anglin has posted on this matter here but there is no code supplied. I tried to use pandoc, but of course pandoc cannot handle the chunk tags and inline code tags correctly.
Consclusion: I guess I will have do write some code to parse my .Rnw files to prepare them for pandoc conversion. Thus my questions:
Is there a better way to go?
Does someone by chance have code
available that will do the job?
TIA
As #Karl commented, LaTeX --> markdown is not a trivial conversion as there are far more options and environments available in LaTeX compared to markdown. You are probably best off working with something like pandoc (see Demo #5). Basically, instead of doing
.Rnw --> .Rmd --> .md
you would do
.Rnw --> .tex --> .md
with pandoc. If you really want to go from .Rnw --> .Rmd, you may want to check out the pander package to write a function to extract code chunks, convert the remaining LaTeX content to markdown, and then re-insert the code chunks into the markdown document.