Very new to R. I need to make a PDF document using R markdown for a lab report.
How do I add images to a markdown?
You can include this in your .Rmd file:
I would also recommend you to take a look at this book (written by the authors of R Markdown) if you want to learn more.
Related
I have a word document with notes from a class. In this document there are images (screenshots from the lecture). I am hoping to make a book, hopefully in bookdown, to help me organize my notes and my R code. I used pandoc to convert the word document and extracted the images, but only some of the images are showing up when i knit the markdown output in RStudio. Any idea why some would show and some wouldnt? COuld it be because i'm changing the .md that pandoc gives to .rmd and they just dont play well together?
Is there any way to take a Bookdown project, and build it as Markdown instead of HTML or TeX?
I ask because I need to post-process the final Markdown output from Bookdown, in order to extract R and Python notebooks for download.
In more detail, I am using Bookdown to build a textbook that embeds notebooks to download, where the notebooks contain subsets of the code and text in the bookdown .Rmd files. For example, a single chapter could contain more than one notebook.
In order to do this, I put start and end comment markers in the RMarkdown input text to identify the section that will be a notebook, and then post-process the generated Markdown files to extract the notebook section. As in something like:
<!--- notebook: first_section.Rmd
-->
Some explanation, maybe using Bookdown extra markup such as #a_citation.
```{r}
a <- 1
a
```
<!--- end of notebook
-->
More markdown.
```{r}
# More code not in notebook.
b <- 2
```
Obviously I could use the input RMarkdown pages, but this would be ugly, because all the extended Bookdown markup such as citations, cross-references and so on, would appear in raw and ugly form in the generated notebook. So I'd really like to be able to get the final output Markdown, after merging, resolving of citations and cross references. Is there any way of doing that?
My question is similar to this as-yet unanswered question, but adds my motivation for an official solution to this problem.
With the latest version of bookdown on CRAN, you can use the output format bookdown::markdown_document2, e.g.,
output:
bookdown::markdown_document2:
base_format: rmarkdown::md_document
variant: gfm
Created a R Markdown analysis in RStudio, and used Knitr to create an HTML file and preserve the .md file. The local HTML file is rendered as expected; plots and formatting. But when I push to my Github repo, the plots are not displaying: https://github.com/GoodTimeWagon/RepData_PeerAssessment1/blob/master/Reproducible_Research_Peer_Assessment_1.md
In place of a plot it says -
I've pushed the image files as well as the markdown, so I'm really at a loss. Thank you in advance for answers.
I am writing an R presentation in an .Rpres file. I published my presentation on Rpubs here: http://rpubs.com/cr517/presentationGurdon
I have images stored in PDF files. I am trying to include them in my presentation, unsuccesfully. I am using this command to include the images:
the same as for .jpg. This command does not result in the display of the image. I have tried to follow these answers but could not make it work:
R markdown: can I insert a pdf to the r markdown file as an image?
Add pdf file in Rmarkdown file
If somebody could help me, that would be much appreciated. That would spare me the re-run of my code exporting images in .jpg format.
Thank you so much.
I'm trying to work out a way to post into confluence a R statistical program Markdown file. So far I have converted the markdown to PDF and imported that but I would like to be able to embed the markdown page directly.
Thanks!
If you want to use Markdown in Confluence, it's quite possible using my free Markdown for Confluence plugin. Get it here: https://bitbucket.org/dvdsmpsn/markdown-for-confluence/downloads
Alternatively, Atlassian have also written a Markdown Macro.
Hopefully, some of this will be applicable to R Markdown.
conflr package will allow you to publish to confluence from Rstudio or render and upload Rmd to confluence.