I have attempted to install knitr using RStudio. When I do so, this is what I get
> install.packages("knitr")
also installing the dependency ‘evaluate’
trying URL 'http://cran.rstudio.com/bin/macosx/mavericks/contrib/3.1/evaluate_0.5.5.tgz'
Warning in install.packages :
cannot open: HTTP status was '404 Not Found'
Error in download.file(url, destfile, method, mode = "wb", ...) :
cannot open URL 'http://cran.rstudio.com/bin/macosx/mavericks/contrib/3.1/evaluate_0.5.5.tgz'
Warning in install.packages :
download of package ‘evaluate’ failed
trying URL 'http://cran.rstudio.com/bin/macosx/mavericks/contrib/3.1/knitr_1.5.tgz'
Content type 'application/x-gzip' length 863862 bytes (843 Kb)
opened URL
==================================================
downloaded 843 Kb
The downloaded binary packages are in
/var/folders/ym/flmt1pms5vj_wdhtsmwy63pm0000gn/T//RtmpWM2Yqc/downloaded_packages
> library("knitr", lib.loc="/Library/Frameworks/R.framework/Versions/3.1/Resources/library")
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
there is no package called ‘evaluate’
Error: package or namespace load failed for ‘knitr’
As a result, knitr does not work at all, even on the little test file provided. When I search the CRAN repository for OSX/Mavericks, I am not finding the evaluate package.
Am I doing something wrong; is there a workaround?
I cannot reproduce it. I can see the knitr package under http://cran.rstudio.com/bin/macosx/mavericks/contrib/3.1/
Alternatively you can install from source:
install.packages('evaluate', type = 'source')
I had to also install the formatR package from source on my Windows 7 box:
install.packages('evaluate', type = 'source')
install.packages('formatR', type = 'source')
Related
I tried to install package copula but incurred error.
I first installed package copula, then tried:
library(copula)
and get:
Show in New WindowClear OutputExpand/Collapse Output
Error: package or namespace load failed for ‘copula’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called ‘gsl’
Then I installed package gsl, restarted R, and tried, following this similar issue:
if(!require(pacman)) install.packages("pacman")
pacman::p_load(copula)
which didn't seem to work. I'm using macOS Big Sur OS.
Edit:
install.packages("gsl")
returned:
There is a binary version available but the source version is later:
Warning in install.packages :
cannot open compressed file '/Users/xxx/.rstudio-desktop/notebooks/3D993D5E-filename/1/8FD36A93A05DA0F7/c6uz0e7whq1or_t/_rs_rdf_111422764b18d.rdf', probable reason 'No such file or directory'
Error in install.packages : cannot open the connection
Update:
On 18/05/21, tried
install.packages("copula")
library(copula)
and caught error below:
> install.packages("copula")
also installing the dependency ‘gsl’
There is a binary version available but the source version is later:
Do you want to install from sources the package which needs compilation? (Yes/no/cancel) Y
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/copula_1.0-1.tgz'
Content type 'application/x-gzip' length 7335219 bytes (7.0 MB)
==================================================
downloaded 7.0 MB
The downloaded binary packages are in
/var/folders/ll/dvpphrys0pddnjffq7zbl7vm0000gn/T//RtmpRUGsKi/downloaded_packages
installing the source package ‘gsl’
trying URL 'https://cran.rstudio.com/src/contrib/gsl_2.1-6.tar.gz'
Content type 'application/x-gzip' length 189794 bytes (185 KB)
==================================================
downloaded 185 KB
* installing *source* package ‘gsl’ ...
** package ‘gsl’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gsl-config... no
configure: error: gsl-config not found, is GSL installed?
ERROR: configuration failed for package ‘gsl’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gsl’
Warning in install.packages :
installation of package ‘gsl’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/ll/dvpphrys0pddnjffq7zbl7vm0000gn/T/RtmpRUGsKi/downloaded_packages’
> library(copula)
Error: package or namespace load failed for ‘copula’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘gsl’
Download Homebrew then run
if(!require(pacman)) install.packages("pacman")
pacman::p_load(copula)
seems working for me :)
I am using RStudio Version 1.0.136 – © 2009-2016 RStudio, Inc. I checked for a new update and I received a massege that saying "You're using the newest version of RStudio".
Here I am trying to use R ‘intsvy’ package.
I started by setting up the directory.
Then, first I installed the package by using the following code:
install.packages("intsvy", lib="/Library/Frameworks/R.framework/Versions/3.3/Resources/library")
Below is the Console results
There is a binary version available but the source version is later:
binary source needs_compilation
intsvy 2.1 2.4 FALSE
installing the source package ‘intsvy’
trying URL 'https://cran.rstudio.com/src/contrib/intsvy_2.4.tar.gz'
Content type 'application/x-gzip' length 56777 bytes (55 KB)
==================================================
downloaded 55 KB
starting R..
* installing *source* package ‘intsvy’ ...
** package ‘intsvy’ successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
there is no package called ‘repr’
ERROR: lazy loading failed for package ‘intsvy’
* removing ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/intsvy’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/intsvy’
Warning in install.packages :
installation of package ‘intsvy’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/jj/3brk8hp91ps2mdv6gzlynh6r0000gn/T/RtmppVfRws/downloaded_packages’
Second, I installed the package by using the following code after receiving the above long massage:
install.packages("intsvy")
Below is the Console results
Installing package into ‘/Users/HU-Hisham/Library/R/3.3/library’
(as ‘lib’ is unspecified)
There is a binary version available but the source version is later:
binary source needs_compilation
intsvy 2.1 2.4 FALSE
installing the source package ‘intsvy’
trying URL 'https://cran.rstudio.com/src/contrib/intsvy_2.4.tar.gz'
Content type 'application/x-gzip' length 56777 bytes (55 KB)
==================================================
downloaded 55 KB
starting R..
* installing *source* package ‘intsvy’ ...
** package ‘intsvy’ successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
there is no package called ‘repr’
ERROR: lazy loading failed for package ‘intsvy’
* removing ‘/Users/HU-Hisham/Library/R/3.3/library/intsvy’
Warning in install.packages :
installation of package ‘intsvy’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/jj/3brk8hp91ps2mdv6gzlynh6r0000gn/T/RtmppVfRws/downloaded_packages’
Next #load backage
library("intsvy")
Below are the massages I received in the Console
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
there is no package called ‘repr’
In addition: Warning message:
package ‘intsvy’ was built under R version 3.3.2
Error: package or namespace load failed for ‘intsvy’
After installations, I tried to run the following command
pirls.var.label(folder = getwd("~/Desktop/Dr. Kato/Data/PISA/CY07_MSU_STU_QQQ.sav"),
+ name = "Variable labels", output = getwd())
Here is the massage
Error: could not find function "pirls.var.label"
Function pirls.var.label is one of the functions in the 'intsvy' package.
Why am I receiving this error? Is it because the package not successfully installed? How can I take care or this matter and start using the package and data? Please advice.
I updated my R version from R3.3.1 (2016-06-21) to R3.6.2 (2019-12-12)as some experts recommended.
Then I run the commands again after restarting R:
1 installing repr package
> install.packages("repr")
Warning in install.packages :
cannot open URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/PACKAGES.rds': HTTP status was '404 Not Found'
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/repr_1.0.2.tgz'
Content type 'application/x-gzip' length 118906 bytes (116 KB)
==================================================
downloaded 116 KB
The downloaded binary packages are in
/var/folders/jj/3brk8hp91ps2mdv6gzlynh6r0000gn/T//Rtmpt0mup2/downloaded_packages
Warning message:
R graphics engine version 12 is not supported by this version of RStudio. The Plots tab will be disabled until a newer version of RStudio is installed.
2 installing intsvy package
> install.packages("intsvy", dependencies = T)
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/intsvy_2.4.tgz'
Content type 'application/x-gzip' length 336356 bytes (328 KB)
==================================================
downloaded 328 KB
The downloaded binary packages are in
/var/folders/jj/3brk8hp91ps2mdv6gzlynh6r0000gn/T//Rtmpt0mup2/downloaded_packages
load backage
> library("intsvy")
Error: package or namespace load failed for ‘intsvy’:
.onLoad failed in loadNamespace() for 'pillar', details:
call: utils::packageVersion("vctrs")
error: there is no package called ‘vctrs’
> library(intsvy)
Error: package or namespace load failed for ‘intsvy’:
.onLoad failed in loadNamespace() for 'pillar', details:
call: utils::packageVersion("vctrs")
error: there is no package called ‘vctrs’
Still same errors when I try to run the package commands
> pisa.var.lable(folder="~/Desktop/Dr. Kato/Data/PISA/CY07_MSU_STU_QQQ.sav")
Error in pisa.var.lable(folder = "~/Desktop/Dr. Kato/Data/PISA/CY07_MSU_STU_QQQ.sav") :
could not find function "pisa.var.lable"
> pirls.var.label(folder = getwd("~/Desktop/Dr. Kato/Data/PISA/CY07_MSU_STU_QQQ.sav"),
+ name = "Variable labels", output = getwd())
Error in pirls.var.label(folder = getwd("~/Desktop/Dr. Kato/Data/PISA/CY07_MSU_STU_QQQ.sav"), :
could not find function "pirls.var.label"
If you have an idea, please share it here so I can try it to solve this issue and start using the package and PISA data.
Thank you
How can i get the alr3 package to install and run?
Running on R Studio 1.1 for Windows. Installed package 'alr3' via Tools->Install Packages.
When I type the following I get error - 'readxl' not found.
library(alr3)
Loading required package: car
Loading required package: carData
Error: package or namespace load failed for ‘car’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘readxl’
Error: package ‘car’ could not be loaded
Tried loading 'readxl' (via Tools->Install Packages) but get error :
install.packages("readxl")
Installing package into ‘C:/Users/Documents/R/win-library/3.4’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/readxl_1.0.0.zip'
Warning in install.packages :
cannot open URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/readxl_1.0.0.zip': HTTP status was '404 Not Found'
Error in download.file(url, destfile, method, mode = "wb", ...) :
cannot open URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/readxl_1.0.0.zip'
Warning in install.packages :
download of package ‘readxl’ failed
I am trying to load ggplot2. I am using Windows 7. R tells me that ggplot2 has loaded successfully but when I try to use the library function it says it cannot find ggplot2. Here is what it says.
install.packages("ggplot2")
Installing package into ‘C:/Users/Owner/Documents/R/win-library/3.1’
(as ‘lib’ is unspecified)
trying URL 'http://cran.rstudio.com/bin/windows/contrib/3.1/ggplot2_1.0.0.zip'
Content type 'application/zip' length 2675581 bytes (2.6 Mb)
opened URL
downloaded 2.6 Mb
package ‘ggplot2’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\Owner\AppData\Local\Temp\RtmpyesS1j\downloaded_packages
I then tried to use the library function and got this message:
library("ggplot2")
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called ‘munsell’
Error: package or namespace load failed for ‘ggplot2’
> head(diamonds)
Error in head(diamonds) : object 'diamonds' not found
I hope someone has an idea about what I have done wrong.
You should have executed this:
install.packages("ggplot2", dependencies=TRUE)
I am trying to load ggplot2. I am using Windows 7. R tells me that ggplot2 has loaded successfully but when I try to use the library function it says it cannot find ggplot2. Here is what it says.
install.packages("ggplot2")
Installing package into ‘C:/Users/Owner/Documents/R/win-library/3.1’
(as ‘lib’ is unspecified)
trying URL 'http://cran.rstudio.com/bin/windows/contrib/3.1/ggplot2_1.0.0.zip'
Content type 'application/zip' length 2675581 bytes (2.6 Mb)
opened URL
downloaded 2.6 Mb
package ‘ggplot2’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\Owner\AppData\Local\Temp\RtmpyesS1j\downloaded_packages
I then tried to use the library function and got this message:
library("ggplot2")
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called ‘munsell’
Error: package or namespace load failed for ‘ggplot2’
> head(diamonds)
Error in head(diamonds) : object 'diamonds' not found
I hope someone has an idea about what I have done wrong.
You should have executed this:
install.packages("ggplot2", dependencies=TRUE)