This question is related to Issues in Installing Rstem Package, but I think the answer provided in the previous one isn't working for my case.
I've downloaded the source package and the installation isn't working correctly. Any help is welcomed!
install.packages("~/Downloads/Rstem_0.4-1.tar.gz", repos = NULL, type = "source")
This is the error I get:
Warning in install.packages :
package ‘~/Downloads/Rstem_0.4-1.tar.gz’ is not available (for R version 2.15.3)
Installing package(s) into ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library’
(as ‘lib’ is unspecified)
* installing *source* package ‘Rstem’ ...
** libs
*** arch - i386
sh: make: command not found
ERROR: compilation failed for package ‘Rstem’
* removing ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/Rstem’
Warning in install.packages :
installation of package ‘/Users/mbtangotan/Downloads/Rstem_0.4-1.tar.gz’ had non-zero exit status
Also tried:
install.packages("Rstem", repos = "http://www.omegahat.org/R", type="source")
Got this as output:
trying URL 'http://www.omegahat.org/R/src/contrib/Rstem_0.4-1.tar.gz'
Content type 'application/x-gzip' length 274336 bytes (267 Kb)
opened URL
downloaded 267 Kb
* installing *source* package ‘Rstem’ ...
** libs
*** arch - i386
sh: make: command not found
ERROR: compilation failed for package ‘Rstem’
* removing ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/Rstem’
The downloaded source packages are in
‘/private/var/folders/t3/f4r4rwmn7xl80skj6h35ftnh0000gn/T/RtmpWKxXs2/downloaded_packages’
Warning message:
In install.packages("Rstem", repos = "http://www.omegahat.org/R", :
installation of package ‘Rstem’ had non-zero exit status
R Version: 2.15.3, x86_64, OSX.
If make is not found it suggests you need to install an XCode appropriate to your unspecified version of "OSX".
If you did have XCode installed this should succeed (at least it did just now with my MacPro running OSX 10.6.8, R 3.0.0 RC, and XCode 3.2.6 (1761):
install.packages("Rstem", repos = "http://www.omegahat.org/R", type="source")
Whether there might be other problems, I cannot tell. The package was removed from CRAN, so there may be other alligators in the swamp.
FWIW, I have just uploaded to CRAN a new package called SnowballC, which implements the same functions as Rstem and uses the same algorithms. Binary packages for Mac OS X and Windows will be available in a few hours/days.
http://cran.r-project.org/web/packages/SnowballC/
Related
I cannot install rgeos or rgdal packages in R version 4.1.3. These packages worked fine a month ago before I reformatted my computer and reinstalled R.
This is what I have tried:
install.packages('rgeos', type="source")
install.packages('rgdal', type="source")
This is the message I get when installing - and I DO have Rtools installed.
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/bhauptman/Documents/R/win-library/4.1’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/rgeos_0.5-9.tar.gz'
Content type 'application/x-gzip' length 290240 bytes (283 KB)
downloaded 283 KB
* installing *source* package 'rgeos' ...
** package 'rgeos' successfully unpacked and MD5 sums checked
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
Warning in system(cmd) : 'make' not found
ERROR: compilation failed for package 'rgeos'
* removing 'C:/Users/bhauptman/Documents/R/win-library/4.1/rgeos'
* restoring previous 'C:/Users/bhauptman/Documents/R/win-library/4.1/rgeos'
Warning in install.packages :
installation of package ‘rgeos’ had non-zero exit status
The downloaded source packages are in ‘C:\Users\bhauptman\AppData\Local\Temp\Rtmp0sTf6q\downloaded_packages’
The manual is written here:https://github.com/Refinitiv/websocket-api/tree/master/Applications/Examples/R
The mentioned code is written in Section 2 of Install libraries
Problems are with this part
library(devtools)
install_github("brettjbush/R-Websockets")
With R and RTools versions above 4.0 I have following error.
> install_github("brettjbush/R-Websockets")
Downloading GitHub repo brettjbush/R-Websockets#HEAD
Installing 1 packages: caTools
Installing package into ‘\\energia.sise/dfs/REDIRECT/german.suhharukov/Documents/R/win-library/4.0’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/caTools_1.18.0.zip'
Content type 'application/zip' length 317292 bytes (309 KB)
downloaded 309 KB
package ‘caTools’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\german.suhharukov\AppData\Local\Temp\RtmpoRYGc0\downloaded_packages
√ checking for file 'C:\Users\german.suhharukov\AppData\Local\Temp\RtmpoRYGc0\remotes1aa03e212c08\brettjbush-R-Websockets-fc7ee9c/DESCRIPTION' (1s)
- preparing 'websockets':
√ checking DESCRIPTION meta-information ...
- cleaning src
Warning in system2(command, args, stdout = NULL, stderr = NULL, ...) :
'CreateProcess' failed to run 'C:\rtools40\usr\bin\make.exe -f "C:/PROGRA~1/R/R-40~1.3/share/make/clean.mk" -f Makevars.win clean'
- checking for LF line-endings in source and make files and shell scripts
- checking for empty or unneeded directories
- building 'websockets_1.1.7.tar.gz'
Installing package into ‘\\sise/dfs/REDIRECT/MYNAME/Documents/R/win-library/4.0’
(as ‘lib’ is unspecified)
'\\sise\dfs\REDIRECT\MYNAME\Documents'
CMD.EXE was started with the above path as the current directory.
UNC paths are not supported. Defaulting to Windows directory.
* installing *source* package 'websockets' ...
** using staged installation
** libs
*** arch - i386
Error in system(cmd) :
(converted from warning) 'CreateProcess' failed to run 'C:\rtools40\usr\bin\make.exe -f "Makevars.win" -f "C:/PROGRA~1/R/R-40~1.3/etc/i386/Makeconf" -f "C:/PROGRA~1/R/R-40~1.3/share/make/winshlib.mk" SHLIB="websockets.dll" OBJECTS="libsock.o"'
* removing '\\sise/dfs/REDIRECT/MYNAME/Documents/R/win-library/4.0/websockets'
Error: Failed to install 'websockets' from GitHub:
(converted from warning) installation of package ‘C:/Users/MYNAME/AppData/Local/Temp/RtmpoRYGc0/file1aa0518554ea/websockets_1.1.7.tar.gz’ had non-zero exit status
> install.packages("caTools")
Installing package into ‘\\sise/dfs/REDIRECT/MYNAME/Documents/R/win-library/4.0’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.0/caTools_1.18.0.zip'
Content type 'application/zip' length 317292 bytes (309 KB)
downloaded 309 KB
package ‘caTools’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\MYNAME\AppData\Local\Temp\XXXXXXX\downloaded_packages
>
Errors are following
> library(devtools)
Loading required package: usethis
> install_github("brettjbush/R-Websockets")
Downloading GitHub repo brettjbush/R-Websockets#master
trying URL 'https://cran.rstudio.com/bin/windows/Rtools/Rtools35.exe'
Content type 'application/x-msdownload' length 108622512 bytes (103.6 MB)
downloaded 103.6 MB
Error: Failed to install 'websockets' from GitHub:
Could not find tools necessary to compile a package
Call `pkgbuild::check_build_tools(debug = TRUE)` to diagnose the problem.
> pkgbuild::check_build_tools(debug = TRUE)
trying URL 'https://cran.rstudio.com/bin/windows/Rtools/Rtools35.exe'
Content type 'application/x-msdownload' length 108622512 bytes (103.6 MB)
downloaded 103.6 MB
Error: Could not find tools necessary to compile a package
Call `pkgbuild::check_build_tools(debug = TRUE)` to diagnose the problem.
> find_rtools()
[1] TRUE
> Sys.which("ls.exe")
ls.exe
"C:\\Rtools\\bin\\ls.exe"
How can I download this package?
In the notes on github it says "NOTE: This package is no longer maintained. For implementing websocket servers in R, try the httpuv package"
Another possible problem could be that you are running a new version of R with an old version of Rtools. So I'd try to install the newest version of Rtools or run an older version of R with a compatible version of Rtools, such that you can build and compile the package.
I ran your code on my machine running R 4.0.2 and Rtools 4.0.0 and did not face any issues installing the package. So I'd suggest installinng the newest version of R and Rtools from here: https://cran.r-project.org/bin/windows/Rtools/ and trying again.
I am trying to install RWeka in RStudio 1.2.5033
I have tried many different ways to install it, I re-installed Java64. Here is my latest try:
install.packages("rJava")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/Jesse's PC/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
There is a binary version available but the source version is later:
binary source needs_compilation
rJava 0.9-12 0.9-13 TRUE
installing the source package ‘rJava’
trying URL 'https://cran.rstudio.com/src/contrib/rJava_0.9-13.tar.gz'
Content type 'application/x-gzip' length 664898 bytes (649 KB)
downloaded 649 KB
* installing *source* package 'rJava' ...
** package 'rJava' successfully unpacked and MD5 sums checked
** using staged installation
Generate Windows-specific files (src/jvm-w32) ...
make: Entering directory '/c/Users/JESSE'~1/AppData/Local/Temp/RtmpuOekjT/R.INSTALL24344ae86868/rJava/src/jvm-w32'
c:/Rtools/mingw_64/bin/dlltool --as c:/Rtools/mingw_64/bin/as --input-def jvm64.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a
make: c:/Rtools/mingw_64/bin/dlltool: Command not found
make: *** [Makefile:20: libjvm.dll.a] Error 127
make: Leaving directory '/c/Users/JESSE'~1/AppData/Local/Temp/RtmpuOekjT/R.INSTALL24344ae86868/rJava/src/jvm-w32'
ERROR: configuration failed for package 'rJava'
* removing 'C:/Users/Jesse's PC/Documents/R/win-library/3.6/rJava'
* restoring previous 'C:/Users/Jesse's PC/Documents/R/win-library/3.6/rJava'
Warning in install.packages :
installation of package ‘rJava’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\Jesse's PC\AppData\Local\Temp\Rtmps5Y5TC\downloaded_packages’
I am having trouble installing glmmADMB package and hoping to get some help here. I've talked to people I know who uses R but we couldn't figure this out.
Looks like the error is about a symbol in the directory. However, the ' is included as a default naming convention in Windows and I can't seem to change the folder name. I name my computer Vanessa and it automatically give the user folder name "Vanessa's PC". [It might not due to this error, since I have ran some other codes that included this symbol in the command.] Any suggestions or thoughts would be greatly appreciated.
This is the log I got:
install.packages("glmmADMB",
+ repos=c("http://glmmadmb.r-forge.r-project.org/repos",
+ getOption("repos")),
+ type="source")
Installing package into ‘C:/Users/Vanessa's PC/Documents/R/win-library/3.4’
(as ‘lib’ is unspecified)
trying URL 'http://glmmadmb.r-forge.r-project.org/repos/src/contrib/glmmADMB_0.8.3.3.tar.gz'
Content type 'application/x-gzip' length 9391177 bytes (9.0 MB)
downloaded 9.0 MB
installing source package 'glmmADMB' ...
** R
** data
* moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Warning: package 'MASS' was built under R version 3.4.4
** help
* installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* arch - i386
Error: unexpected symbol in "tools:::.test_load_package('glmmADMB', 'C:/Users/Vanessa's"
Execution halted
* arch - x64
Error: unexpected symbol in "tools:::.test_load_package('glmmADMB', 'C:/Users/Vanessa's"
Execution halted
ERROR: loading failed for 'i386', 'x64'
removing 'C:/Users/Vanessa's PC/Documents/R/win-library/3.4/glmmADMB'
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-34~1.1/bin/x64/R" CMD INSTALL -l "C:\Users\Vanessa's PC\Documents\R\win-library\3.4" C:\Users\VANESSA'S~1\AppData\Local\Temp\Rtmp2piXfe/downloaded_packages/glmmADMB_0.8.3.3.tar.gz' had status 1
Warning in install.packages :
installation of package ‘glmmADMB’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\Vanessa's PC\AppData\Local\Temp\Rtmp2piXfe\downloaded_packages’
Try installing the devtools package first and then installing glmmADMB directly from the development version on GitHub:
> library(devtools)
> devtools::install_github("bbolker/glmmadmb")
Downloading GitHub repo bbolker/glmmadmb#master
from URL https://api.github.com/repos/bbolker/glmmadmb/zipball/master
Installing glmmADMB
Installing 1 package: R2admb
Installing package into ‘C:/Users/User/Documents/R/win-library/3.4’
(as ‘lib’ is unspecified)
trying URL
'https://cran.rstudio.com/bin/windows/contrib/3.4/R2admb_0.7.16.zip'
Content type 'application/zip' length 505317 bytes (493 KB)
downloaded 493 KB
package ‘R2admb’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\User\AppData\Local\Temp\Rtmp4WWJZp\downloaded_packages
"C:/PROGRA~1/R/R-34~1.4/bin/x64/R" --no-site-file --no-environ
--no-save -- no-restore --quiet CMD INSTALL \
"C:/Users/User/AppData/Local/Temp/Rtmp4WWJZp/devtools28d0200a7e9b/bbolker-
glmmadmb-ac75f73" \
--library="C:/Users/User/Documents/R/win-library/3.4" --install-tests
* installing *source* package 'glmmADMB' ...
....
> library(glmmADMB)
Loading required package: MASS
Attaching package: ‘glmmADMB’
The following object is masked from ‘package:MASS’:
stepAIC
The following object is masked from ‘package:stats’:
step
This works:
install.packages("R2admb")
install.packages("glmmADMB",
repos=c("http://glmmadmb.r-forge.r-project.org/repos",
getOption("repos")),
type="source")
library(glmmADMB)
I'm running R 3.4.2 and R Studio 1.0.153. I want to install the prob package in R. The prob package in an archived file. It is located here. I am trying to install the prob_1.0-0.tar.gz package. I have no problem downloading and opening the package archive file. The code is below, it seems I need to install the fAsianOptions package.
ERROR: dependency 'fAsianOptions' is not available for package 'prob'
* removing 'C:/Users/blake_000/Documents/R/win-library/3.4/prob' Warning in install.packages : running command
'"C:/PROGRA~1/R/R-34~1.2/bin/x64/R" CMD INSTALL -l
"C:\Users\blake_000\Documents\R\win-library\3.4"
"C:/Users/BLAKE_~1/GOOGLE~1/Life/CSUEB/FALL20~1/6204-P~1/RCODE~1/prob_1.0-0.tar.gz"'
had status 1 Warning in install.packages : installation of package
‘C:/Users/BLAKE_~1/GOOGLE~1/Life/CSUEB/FALL20~1/6204-P~1/RCODE~1/prob_1.0-0.tar.gz’
had non-zero exit status
Unfortunately, the fAsianOptions package is also archived. It is located here and I downloaded version fAsianOptions_3010.79.tar.gz. There were a number of dependencies but I installed the required packages (timeDate, timeSeries, etc.)
However, the fAsianOptions package is not installing. The error code reads as follows:
install.packages("C:/Users/blake_000/Google Drive/Life/CSUEB/Fall
2017/6204- Probability/R Code/fAsianOptions_3010.79.tar.gz", repos =
NULL, type = "source") Installing package into
‘C:/Users/blake_000/Documents/R/win-library/3.4’ (as ‘lib’ is
unspecified)
* installing source package 'fAsianOptions' ...
** package 'fAsianOptions' successfully unpacked and MD5 sums checked
** libs
*** arch - i386 Warning: running command 'make -f "Makevars" -f "C:/PROGRA~1/R/R-34~1.2/etc/i386/Makeconf" -f
"C:/PROGRA~1/R/R-34~1.2/share/make/winshlib.mk"
SHLIB="fAsianOptions.dll" SHLIB_LIBADD='$(FLIBS)'
OBJECTS="EBMAsianOptions.o GammaFunctions.o
HypergeometricFunctions.o"' had status 127 ERROR: compilation failed
for package 'fAsianOptions'
* removing 'C:/Users/blake_000/Documents/R/win-library/3.4/fAsianOptions' Warning
in install.packages : running command
'"C:/PROGRA~1/R/R-34~1.2/bin/x64/R" CMD INSTALL -l
"C:\Users\blake_000\Documents\R\win-library\3.4"
"C:/Users/BLAKE_~1/GOOGLE~1/Life/CSUEB/FALL20~1/6204-P~1/RCODE~1/fAsianOptions_3010.79.tar.gz"'
had status 1 Warning in install.packages : installation of package
‘C:/Users/BLAKE_~1/GOOGLE~1/Life/CSUEB/FALL20~1/6204-P~1/RCODE~1/fAsianOptions_3010.79.tar.gz’
had non-zero exit status
I'm hoping that someone can help me to install the fAsianOptions dependency so I can install the prob package. Or, if there's an easier way, please let me know!
I had the same problem. I solved it by installing lower version of R -2.9. prob is available in repository for this version.