it seems that the package "geoR" was removed from the repository.
So after trying to install it manually with:
install.packages(file.choose(), repos=NULL, type="source")
Installing package into "geoR_1.8-1.zip"(as ‘lib’ is unspecified)package 'geoR' successfully unpacked and MD5 sums checkedError in utils:::unpackPkgZip(pkg, pkg_name, lib, libs_only, lock, reuse_lockdir = reuse_lockdir) :package 'geoR' not installed because it is not built for UCRTWarning in install.packages :installation of package ‘geoR_1.8-1.zip’ had non-zero exit status
I have the latest version of R (4.2.0).
So I've tried another command:
install.packages("geoR_1.8-1.zip", repos = NULL, type = "win.binary")
Installing package into ‘libpath’(as ‘lib’ is unspecified)package ‘geoR’ successfully unpacked and MD5 sums checkedError in install.packages : package ‘geoR’ not installed because it is not built for UCRT
So how do I make it work?
I've already tried to uninstall R, Rstudio, Rtools42 and all the folders associated...
After a long try, I came up with this:
If I try to install an older version of geoR,
install.packages("geoR_1.7-5.2.tar.gz", repos = NULL, type = "source")
Installing package into ‘C:/Users/.../AppData/Local/R/win-library/4.2’
(as ‘lib’ is unspecified)
ERROR: dependencies 'splancs', 'RandomFields' are not available for package 'geoR'
* removing 'C:/Users/..../AppData/Local/R/win-library/4.2/geoR'
Warning in install.packages :
installation of package ‘geoR_1.7-5.2.tar.gz’ had non-zero exit status
So this seems a dependancies issue, and after installing splancs correctly, RandomFields (manually because there is no repository for it) give me this output after a long string (maybe the compilation):
make: *** [C:/PROGRA~1/R/R-42~1.0/etc/x64/Makeconf:257: brownresnick.o] Error 1
ERROR: compilation failed for package 'RandomFields'
* removing 'C:/Users/.../AppData/Local/R/win-library/4.2/RandomFields'
Warning message:
In install.packages(file.choose()) :
installation of package ‘C:/Users/rmish/Downloads/RandomFields_3.3.tar.gz’ had non-zero exit status
Somebody wants to help me?
Thanks in advance, I'm really stuck.
Both RandomFields and geoR are no longer available on CRAN, so you'll have to download their respective tar files. You'll also need to install the splancs package, which is available on CRAN.
install.packages("splancs")
Download the two other packages here:
http://www2.uaem.mx/r-mirror/src/contrib/RandomFields_2.0.66.tar.gz
https://cran.r-project.org/src/contrib/Archive/geoR/geoR_1.8-1.tar.gz
Install RandomFields first:
install.packages("C:/path/to/RandomFields_2.0.66.tar.gz", repos = NULL, type = "source")
And then geoR:
install.packages("C:/path/to/geoR_1.8-1.tar.gz", repos = NULL, type = "source")
Related
I am trying to install the RADammi package on R 3.6 using "devtools", however I receive this error:
Installing package into ‘C:/Users/taham/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
ERROR: dependencies 'Biostrings', 'IRanges' are not available for package 'RADami'
* removing 'C:/Users/taham/Documents/R/win-library/3.6/RADami'
Error: Failed to install 'unknown package' from URL:
(converted from warning) installation of package > ‘C:/Users/taham/AppData/Local/Temp/RtmpycMnQ2/remotes11246cb38f0/RADami’ had non-zero exit status.
It is an old package that has been removed from CRAN
https://rdrr.io/cran/RADami/
how should I install it?
update:
I finally could manage to install the two dependencies using below command:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Biostrings")
BiocManager::install("IRanges")
I have downloaded the zip archived RADami file and tried to install the package, I receive this fetal error again:
install.packages("C:/Users/taham/Downloads/RADami_1.1-2.tar.gz", repos = NULL, type = "source")
Installing package into ‘C:/Users/taham/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
installing source package 'RADami' ...
** package 'RADami' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: objects 'c.phylo', 'c.multiPhylo' are not exported by 'namespace:ape'
Execution halted
ERROR: lazy loading failed for package 'RADami'
removing 'C:/Users/taham/Documents/R/win-library/3.6/RADami'
Warning in install.packages :
installation of package ‘C:/Users/taham/Downloads/RADami_1.1-2.tar.gz’ had non-> zero exit status
I get the same error when using devtools
It sounds like you need to first install "IRanges" and "Biostrings" from BioConductor:
library(devtools)
install_bioc("IRanges")
install_bioc("Biostrings")
Though these have other dependencies such as "S4Vector" which you may need to install manually also.
Then you should be able to install RADami:
install_url("https://cran.r-project.org/src/contrib/Archive/RADami/RADami_1.0-3.tar.gz")
I also had this issue with installing from the CRAN archive, but was successfully able to install it from the developer's Github. In R:
library(devtools)
install_github("andrew-hipp/RADami")
I am trying to install an archived R package, SciencesPo, but it's not installing, even after installing the dependencies. The following is the code and the messages that follow
install.packages("C:\Users\Overman\Downloads\SciencesPo_1.4.1.tar.gz", repos = NULL, type = "source")
Installing package into ‘C:/Users/Overman/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
* installing source package 'SciencesPo' ...
** package 'SciencesPo' successfully unpacked and MD5 sums checked
** libs
*** arch - i386
Warning in system(cmd) : 'make' not found
ERROR: compilation failed for package 'SciencesPo'
* removing 'C:/Users/Overman/Documents/R/win-library/3.5/SciencesPo'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘C:/Users/Overman/Downloads/SciencesPo_1.4.1.tar.gz’ had non-zero exit status
Installing Rtools solved the problem.
I'm trying to install ROracle package on my Windows 7 client. I have Oracle Instant client and Rtools installed, DBI package is istalled, OCI32_LIB environmental variable has been set. But when I try to install from command line:
C:\Temp>R CMD INSTALL --build ROracle_1.1-10.tar.gz
* installing to library 'C:/Users/myaccount/Documents/R/win-library/3.0'
* installing *source* package 'ROracle' ...
** package 'ROracle' successfully unpacked and MD5 sums checked
ERROR: configuration failed for package 'ROracle'
* removing 'C:/Users/myaccount/Documents/R/win-library/3.0/ROracle'
C:\Temp>
When I try to install from source:
> install.packages("ROracle",type = "source")
Warning in install.packages :
package ‘ROracle’ is not available (for R version 3.0.0)
Installing package into ‘C:/Users/myaccount/Documents/R/win-library/3.0’
(as ‘lib’ is unspecified)
trying URL 'http://cran.at.r-project.org/src/contrib/ROracle_1.1-10.tar.gz'
Content type 'application/x-gzip' length 168193 bytes (164 Kb)
opened URL
downloaded 164 Kb
* installing *source* package 'ROracle' ...
** package 'ROracle' successfully unpacked and MD5 sums checked
ERROR: configuration failed for package 'ROracle'
* removing 'C:/Users/myaccount/Documents/R/win-library/3.0/ROracle'
Warning in install.packages :
running command '"C:/PROGRA~1/R/R-30~1.0/bin/i386/R" CMD INSTALL -l "C:\Users\myaccount\Documents\R\win-library\3.0" C:\Users\myaccount\AppData\Local\Temp\RtmpGggbyp/downloaded_packages/ROracle_1.1-10.tar.gz' had status 1
Warning in install.packages :
installation of package ‘ROracle’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\myaccount\AppData\Local\Temp\RtmpGggbyp\downloaded_packages’
What should I do, how to proceed?
From http://jgilfillan.github.io/2016/05/28/how-to-install-roracle-in-windows-7/
Download binary from oracle:
http://www.oracle.com/technetwork/database/database-technologies/r/roracle/downloads/index.html
The run the following command in r, substituting the file path:
setwd('xxxxx') # set to path of download
install.packages('ROracle_1.2-1.zip', repos = NULL)
Then load the library and use the package - you may have to change XXXX to whatever is in your TNS Names:
library('ROracle')
drv <- dbDriver("Oracle")
con <- dbConnect(drv, "USER GOES HERE", "PASSWORD GOES HERE", dbname='XXX')
test connection:
dbReadTable(con, 'DUAL')
Note that this has also been confirmed to work on Windows 10.
I had this exact problem as well, including the OCI_INC error. They actually talk about it in the INSTALL file in the .tar.gz package, you can read more there.
You have to set the OCI_INC variable to the include directory like this:
set OCI_INC=C:\oracle\product\11.2.0\client_2\oci\include
Or whereever your file is. Here was my complete setup to get things installed from an Admin privileged command line.
set OCI_LIB64=C:\oracle\product\11.2.0\client_2\BIN
set OCI_INC=C:\oracle\product\11.2.0\client_2\oci\include
set PATH=C:\oracle\product\11.2.0\client_2\BIN;C:\Rtools\bin;c:\Rtools\gcc-4.6.3\bin;%PATH%
"C:/PROGRA~1/R/R-30~1.1/bin/x64/R" CMD INSTALL --build "C:/Your/Path/To/ROracle_1.1-10.tar.gz"
Also, make sure to change client_2 to client_1 and OCI_LIB64 to OCI_LIB32 if you are trying to do a 32-bit install.
After following the steps (highlighted in red boxes).
I also ran commands below on R.
So, everything went through well on a Windows 7 64-bit, R 3.4 64bit environment.
Sys.setenv(OCI_LIB64="C:/Oracle/instantclient_12_2/")
Sys.setenv(OCI_INC="C:/Oracle/product/11.2.0/client_1/oci/include")
install.packages("ROracle", dep=T)
I had exactly this problem. It was caused because when installing RTools I did not check the 'edit PATH' checkbox. I uninstalled RTools and reinstalled it again, this time making sure the checkbox was checked, and it worked first time! Hope this helps.
I had a similar error when trying to install ROracle from source.1
After searching around a bit I had to undertake what others have mentioned as well as redownloading the tar.gz. When I double checked the download size it was 10KB instead of 234KB.
Re-Download source from: http://cran.r-project.org/web/packages/ROracle/index.html
Updated the following Environmental Varibles in windows
SET PATH=C:\Rtools\bin;C:\Rtools\gcc-4.6.3;%PATH%
SET OCI_INC=C:\Oracle_11G_ClientR2\product\11.2.0\client_1\oci\include
SET OCI_LIB32=C:\Oracle_11G_ClientR2\product\11.2.0\client_1\BIN
SET OCI_LIB64=C:\Oracle_11G_ClientR2\product\11.2.0\client_1\BIN
R CMD INSTALL --build "C:\temp\ROracle_1.1-12.tar.gz"
Output should look like the following:
1 Here is what the previous error looked like:
C:\Temp>R CMD INSTALL --build "C:\\temp\\ROracle_1.1-12.tar.gz"
Error in getOctD(x, offset, len) : invalid octal digit
Along with the 'Basic Package' and the 'ODBC Package', with Oracle 11g, you should copy unpacked files from the 'SDK package' into the subdirectory instantclient_11_2. In this case, you will not need to define the environment variable Sys.setenv (OCI_INC = "...").
This is what worked for me:
Sys.setenv(OCI_LIB32="C:/oracle/product/12.1.0/client_1/BIN/")
Sys.setenv(OCI_INC="C:/oracle/product/12.1.0/client_1/oci/include/")
install.packages("ROracle")
install.packages("P:/Strategic-Primary/documentation/R/Packages/DBI_1.0.0.zip", repos = NULL, type = "win.binary")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/xxx/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
package ‘DBI’ successfully unpacked and MD5 sums checked
> setwd('E:\R\packages')
Error: '\R' is an unrecognized escape in character string starting "'E:\R"
> setwd('E:\\R\\packages')
> install.packages('ROracle-1.3.2.zip')
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/xxx/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘ROracle-1.3.2.zip’ is not available (for R version 3.6.0)
> install.packages('ROracle-1.3.1.zip')
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/xxx/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘ROracle-1.3.1.zip’ is not available (for R version 3.6.0)
> Sys.setenv(OCI_LIB32="C:/oracle/product/12.1.0/client_1/BIN/")
> Sys.setenv(OCI_INC="C:/oracle/product/12.1.0/client_1/oci/include/")
> install.packages("ROracle")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/xxx/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
Package which is only available in source form, and may need compilation of C/C++/Fortran: ‘ROracle’
These will not be installed
> install.packages('ROracle-1.3.1.zip')
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/xxx/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘ROracle-1.3.1.zip’ is not available (for R version 3.6.0)
> install.packages('ROracle-1.3.2.zip')
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘C:/Users/xxx/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘ROracle-1.3.2.zip’ is not available (for R version 3.6.0)
I installed SDK, ODBC and basic install client (also set Env variable path) and it is still not working for me. Any advise pls?
I'm running R 3.4.2 and R Studio 1.0.153. I want to install the prob package in R. The prob package in an archived file. It is located here. I am trying to install the prob_1.0-0.tar.gz package. I have no problem downloading and opening the package archive file. The code is below, it seems I need to install the fAsianOptions package.
ERROR: dependency 'fAsianOptions' is not available for package 'prob'
* removing 'C:/Users/blake_000/Documents/R/win-library/3.4/prob' Warning in install.packages : running command
'"C:/PROGRA~1/R/R-34~1.2/bin/x64/R" CMD INSTALL -l
"C:\Users\blake_000\Documents\R\win-library\3.4"
"C:/Users/BLAKE_~1/GOOGLE~1/Life/CSUEB/FALL20~1/6204-P~1/RCODE~1/prob_1.0-0.tar.gz"'
had status 1 Warning in install.packages : installation of package
‘C:/Users/BLAKE_~1/GOOGLE~1/Life/CSUEB/FALL20~1/6204-P~1/RCODE~1/prob_1.0-0.tar.gz’
had non-zero exit status
Unfortunately, the fAsianOptions package is also archived. It is located here and I downloaded version fAsianOptions_3010.79.tar.gz. There were a number of dependencies but I installed the required packages (timeDate, timeSeries, etc.)
However, the fAsianOptions package is not installing. The error code reads as follows:
install.packages("C:/Users/blake_000/Google Drive/Life/CSUEB/Fall
2017/6204- Probability/R Code/fAsianOptions_3010.79.tar.gz", repos =
NULL, type = "source") Installing package into
‘C:/Users/blake_000/Documents/R/win-library/3.4’ (as ‘lib’ is
unspecified)
* installing source package 'fAsianOptions' ...
** package 'fAsianOptions' successfully unpacked and MD5 sums checked
** libs
*** arch - i386 Warning: running command 'make -f "Makevars" -f "C:/PROGRA~1/R/R-34~1.2/etc/i386/Makeconf" -f
"C:/PROGRA~1/R/R-34~1.2/share/make/winshlib.mk"
SHLIB="fAsianOptions.dll" SHLIB_LIBADD='$(FLIBS)'
OBJECTS="EBMAsianOptions.o GammaFunctions.o
HypergeometricFunctions.o"' had status 127 ERROR: compilation failed
for package 'fAsianOptions'
* removing 'C:/Users/blake_000/Documents/R/win-library/3.4/fAsianOptions' Warning
in install.packages : running command
'"C:/PROGRA~1/R/R-34~1.2/bin/x64/R" CMD INSTALL -l
"C:\Users\blake_000\Documents\R\win-library\3.4"
"C:/Users/BLAKE_~1/GOOGLE~1/Life/CSUEB/FALL20~1/6204-P~1/RCODE~1/fAsianOptions_3010.79.tar.gz"'
had status 1 Warning in install.packages : installation of package
‘C:/Users/BLAKE_~1/GOOGLE~1/Life/CSUEB/FALL20~1/6204-P~1/RCODE~1/fAsianOptions_3010.79.tar.gz’
had non-zero exit status
I'm hoping that someone can help me to install the fAsianOptions dependency so I can install the prob package. Or, if there's an easier way, please let me know!
I had the same problem. I solved it by installing lower version of R -2.9. prob is available in repository for this version.
This question is related to Issues in Installing Rstem Package, but I think the answer provided in the previous one isn't working for my case.
I've downloaded the source package and the installation isn't working correctly. Any help is welcomed!
install.packages("~/Downloads/Rstem_0.4-1.tar.gz", repos = NULL, type = "source")
This is the error I get:
Warning in install.packages :
package ‘~/Downloads/Rstem_0.4-1.tar.gz’ is not available (for R version 2.15.3)
Installing package(s) into ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library’
(as ‘lib’ is unspecified)
* installing *source* package ‘Rstem’ ...
** libs
*** arch - i386
sh: make: command not found
ERROR: compilation failed for package ‘Rstem’
* removing ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/Rstem’
Warning in install.packages :
installation of package ‘/Users/mbtangotan/Downloads/Rstem_0.4-1.tar.gz’ had non-zero exit status
Also tried:
install.packages("Rstem", repos = "http://www.omegahat.org/R", type="source")
Got this as output:
trying URL 'http://www.omegahat.org/R/src/contrib/Rstem_0.4-1.tar.gz'
Content type 'application/x-gzip' length 274336 bytes (267 Kb)
opened URL
downloaded 267 Kb
* installing *source* package ‘Rstem’ ...
** libs
*** arch - i386
sh: make: command not found
ERROR: compilation failed for package ‘Rstem’
* removing ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/Rstem’
The downloaded source packages are in
‘/private/var/folders/t3/f4r4rwmn7xl80skj6h35ftnh0000gn/T/RtmpWKxXs2/downloaded_packages’
Warning message:
In install.packages("Rstem", repos = "http://www.omegahat.org/R", :
installation of package ‘Rstem’ had non-zero exit status
R Version: 2.15.3, x86_64, OSX.
If make is not found it suggests you need to install an XCode appropriate to your unspecified version of "OSX".
If you did have XCode installed this should succeed (at least it did just now with my MacPro running OSX 10.6.8, R 3.0.0 RC, and XCode 3.2.6 (1761):
install.packages("Rstem", repos = "http://www.omegahat.org/R", type="source")
Whether there might be other problems, I cannot tell. The package was removed from CRAN, so there may be other alligators in the swamp.
FWIW, I have just uploaded to CRAN a new package called SnowballC, which implements the same functions as Rstem and uses the same algorithms. Binary packages for Mac OS X and Windows will be available in a few hours/days.
http://cran.r-project.org/web/packages/SnowballC/