I have a pandas dataframe with columns labeled...
x
y
true_x
true_y
I would like to plot a curve of true_x vs true_y overlaid with
points y vs x.
The tutorials leave me baffled since they only describe simple 2D and 3D examples.
We're about to start working extensively on additional documentation so that's good feedback. To create a simple plot like that simply declare a Curve and a Scatter object each with the appropriate kdims and vdims and overlay them using the mul operator:
curve = hv.Curve(df, kdims=['true_x'], vdims=['true_y'])
scatter = hv.Scatter(df, kdims=['x'], vdims=['y'])
curve * scatter
Related
I am trying to stack multiple 2d plots into a single 3d plot in R.
For example, I want to try and put these plots
into a single 3d image. The z axis would be the biomass density, y axis be the size and the x axis be the time step (and then hopefully I could use a surface plot to join up all the lines). My aim is to try and show the wave travelling through the size over a long period of time instead of showing lots of images.
Does anyone know how to do this?
I'm trying to figure out how to create surface plots with Plots.jl. I can create a spherical surface from a 2-d mesh like below:
using Plots
plotlyjs()
# Read the theta and phi angles from file...
x2d = sind(theta2d).*cosd(phi2d)
y2d = sind(theta2d).*sind(phi2d)
z2d = cosd(theta2d)
surface(x2d,y2d,z2d)
However, I want to have the surface color be controlled by a separate matrix like the plot below (made with Python).
from mayavi import mlab
# Create/read plot data...
mlab.figure(bgcolor=(1,1,1), fgcolor=(0.,0.,0.))
mlab.mesh(x2d, y2d, z2d, scalars=p2d, colormap='jet', vmax=5, vmin=-35)
Perhaps I should just use the Python plotting functions directly? Or maybe GLVisualize directly?
Thanks!
You can supply the matrix controlling the colors as the fill_z keyword. It doesn't work on all backends, but try plotljys and pyplot.
I am looking for a way to plot a wind 3D direction in R or MATLAB.
There are 3 given vector components:
u : x-axis (horizontal)
v : y-axis (horizontal)
w : z-axis (vertical)
For plotting wind directions in 2D, there is the traditional way of using a rose plot like this: https://commons.wikimedia.org/wiki/File:Wind_rose_plot.jpg
Do you have any idea, how I can plot this in 3D using the R statistic engine or MATLAB, by using the additional w vector?
Thanks a lot!
In MATLAB quiver3 will be the most relevant to your case. More information and examples here.
There are a number of questions in this forum on locating intersections between a fitted model and some raw data. However, in my case, I am in an early stage project where I am still evaluating data.
To begin with, I have created a data frame that contains a ratio value whose ideal value should be 1.0. I have plotted the data frame and also used abline() function to plot a horizontal line at y=1.0. This horizontal line and the plot of ratios intersect at some point.
plot(a$TIME.STAMP, a$PROCESS.RATIO,
xlab='Time (5s)',
ylab='Process ratio',
col='darkolivegreen',
type='l')
abline(h=1.0,col='red')
My aim is to locate the intersection point, say x and draw two vertical lines at x±k, as abline(v=x-k) and abline(v=x+k) where, k is certain band of tolerance.
Applying a grid on the plot is not really an option because this plot will be a part of a multi-panel plot. And, because ratio data is very tightly laid out, the plot will not be too readable. Finally, the x±k will be quite valuable in my discussions with the domain experts.
Can you please guide me how to achieve this?
Here are two solutions. The first one uses locator() and will be useful if you do not have too many charts to produce:
x <- 1:5
y <- log(1:5)
df1 <-data.frame(x= 1:5,y=log(1:5))
k <-0.5
plot(df1,type="o",lwd=2)
abline(h=1, col="red")
locator()
By clicking on the intersection (and stopping the locator top left of the chart), you will get the intersection:
> locator()
$x
[1] 2.765327
$y
[1] 1.002495
You would then add abline(v=2.765327).
If you need a more programmable way of finding the intersection, we will have to estimate the function of your data. Unfortunately, you haven’t provided us with PROCESS.RATIO, so we can only guess what your data looks like. Hopefully, the data is smooth. Here’s a solution that should work with nonlinear data. As you can see in the previous chart, all R does is draw a line between the dots. So, we have to fit a curve in there. Here I’m fitting the data with a polynomial of order 2. If your data is less linear, you can try increasing the order (2 here). If your data is linear, use a simple lm.
fit <-lm(y~poly(x,2))
newx <-data.frame(x=seq(0,5,0.01))
fitline = predict(fit, newdata=newx)
est <-data.frame(newx,fitline)
plot(df1,type="o",lwd=2)
abline(h=1, col="red")
lines(est, col="blue",lwd=2)
Using this fitted curve, we can then find the closest point to y=1. Once we have that point, we can draw vertical lines at the intersection and at +/-k.
cross <-est[which.min(abs(1-est$fitline)),] #find closest to 1
plot(df1,type="o",lwd=2)
abline(h=1)
abline(v=cross[1], col="green")
abline(v=cross[1]-k, col="purple")
abline(v=cross[1]+k, col="purple")
t = 0:%pi/50:10*%pi;
plot3d(sin(t),cos(t),t)
When I execute this code the plot is done but the line is not visible, only the box. Any ideas which property I have to change?
Thanks
The third argument should, in this case, be a matrix of the size (length arg1) x (length arg2).
You'd expect plot3d to behave like an extension of plot and plot2d but it isn't quite the case.
The 2d plot takes a vector of x and a vector of y and plots points at (x1,y1), (x2,y2) etc., joined with lines or not as per style settings. That fits the conceptual model we usually use for 2d plots - charting the relationship of one thing as a function of another, in most cases (y = f(x)). THere are other ways to use a 2d plot: scatter graphs are common but it's easy enough to produce one using the two-rows-of-data concept.
This doesn't extend smoothly to 3d though as there are many other ways you could use a 3d plot to represent data. If you gave it three vectors of coordinates and asked it to draw a line between them all what might we want to use that for? Is that the most useful way of using a 3d plot?
Most packages give you different visualisation types for the different kinds of data. Mathematica has a lot of 3d visualisation types and Python/Scipy/Mayavi2 has even more. Matlab has a number too but Scilab, while normally mirroring Matlab, in this case prefers to handle it all with the plot3d function.
I think of it like a contour plot: you give it a vector of x and a vector of y and it uses those to create a grid of (x,y) points. The third argument is then a matrix whose dimensions match those of the (x,y) grid holding the z-coordinates of each point. The first example in the docs does what I think you're after:
t=[0:0.3:2*%pi]';
z=sin(t)*cos(t');
plot3d(t,t,z);
The first line creates a column vector of length 21
-->size(t)
ans =
21. 1.
The second line computes a 21 x 21 matrix of products of the permutations of sin(t) with cos(t) - note the transpose in the cos(t') element.
-->size(z)
ans =
21. 21.
Then when it plots them it draws (x1,y1,z11), (x1,y2,x12), (x2,y2,z22) and so on. It draws lines between adjacent points in a mesh, or no lines, or just the surface.