We are thinking to add image management function by parse the existing dicomdir file and display the content with a tree structure. The existing application is using Java with Dcm4Che.
My qestion is how to parse the dicomdir file to get enough information to display its content in Java tree?
More Refer here :: DICOMDIR READ IMAGES
public void getFilePath(DicomObject firstRecord) throws IOException {
int i = 1;
for (DicomObject rec = firstRecord; rec != null; rec = dicomDir
.findNextSiblingRecord(rec), ++i) {
if (rec.get(Tag.ReferencedFileID) != null) {
File f = dicomDir.toReferencedFile(rec);
System.out.println(f.getAbsolutePath());
}
getFilePath(dicomDir.findFirstChildRecord(rec));
}
Click Here for Same Code
private DicomDirReader dirReader;
public ReadDicomDir(File file) throws IOException {
dirReader = new DicomDirReader(file);
}
public List<File> getFiles() throws IOException {
List<File> listDirFiles = new ArrayList<File>();
getFilePath(dirReader.findFirstRootRecord(), listDirFiles);
return listDirFiles;
}
/**
* Get Filepath of Dicom File
*
* #param firstRecord
* #param listDirFiles
* #throws IOException
*/
public void getFilePath(DicomObject firstRecord, List<File> listDirFiles)
throws IOException {
int i = 1;
for (DicomObject rec = firstRecord; rec != null; rec = dirReader
.findNextSiblingRecord(rec), ++i) {
if (rec.contains(Tag.ReferencedFileID)) {
File f = dirReader.toReferencedFile(rec);
// System.out.println(f.getAbsolutePath());
listDirFiles.add(f);
}
getFilePath(dirReader.findFirstChildRecord(rec), listDirFiles);
}
Related
So I'm trying to make a billing system in which I want to print a receipt.I was able to do it with some code that I found online,but the font size is too big to print in the 58mm wide paper.I'm not able to adjust the font size.Any kind of help with this issue will be highly appreciated.Thank You.
Here is The Code :
public class PrinterService implements Printable {
public List<String> getPrinters(){
DocFlavor flavor = DocFlavor.BYTE_ARRAY.AUTOSENSE;
PrintRequestAttributeSet pras = new HashPrintRequestAttributeSet();
PrintService printServices[] = PrintServiceLookup.lookupPrintServices(
flavor, pras);
List<String> printerList = new ArrayList<String>();
for(PrintService printerService: printServices){
printerList.add( printerService.getName());
}
return printerList;
}
#Override
public int print(Graphics g, PageFormat pf, int page)
throws PrinterException {
if (page > 0) { /* We have only one page, and 'page' is zero-based */
return NO_SUCH_PAGE;
}
/*
* User (0,0) is typically outside the imageable area, so we must
* translate by the X and Y values in the PageFormat to avoid clipping
*/
Graphics2D g2d = (Graphics2D) g;
g2d.translate(pf.getImageableX(), pf.getImageableY());
/* Now we perform our rendering */
g.setFont(new Font("Roman", 0, 8));
g.drawString("Hello world !", 0, 10);
return PAGE_EXISTS;
}
public void printString(String printerName, String text) {
// find the printService of name printerName
DocFlavor flavor = DocFlavor.BYTE_ARRAY.AUTOSENSE;
PrintRequestAttributeSet pras = new HashPrintRequestAttributeSet();
PrintService printService[] = PrintServiceLookup.lookupPrintServices(
flavor, pras);
PrintService service = findPrintService(printerName, printService);
DocPrintJob job = service.createPrintJob();
try {
byte[] bytes;
// important for umlaut chars
bytes = text.getBytes("CP437");
Doc doc = new SimpleDoc(bytes, flavor, null);
job.print(doc, null);
} catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
public void printBytes(String printerName, byte[] bytes) {
DocFlavor flavor = DocFlavor.BYTE_ARRAY.AUTOSENSE;
PrintRequestAttributeSet pras = new HashPrintRequestAttributeSet();
PrintService printService[] = PrintServiceLookup.lookupPrintServices(
flavor, pras);
PrintService service = findPrintService(printerName, printService);
DocPrintJob job = service.createPrintJob();
try {
Doc doc = new SimpleDoc(bytes, flavor, null);
job.print(doc, null);
} catch (Exception e) {
e.printStackTrace();
}
}
private PrintService findPrintService(String printerName,
PrintService[] services) {
for (PrintService service : services) {
if (service.getName().equalsIgnoreCase(printerName)) {
return service;
}
}
return null;
}
}
#FXML
public void printit(ActionEvent actionEvent)
{
PrinterService printerService = new PrinterService();
System.out.println(printerService.getPrinters());
//print some stuff
printerService.printString("POS-58-Series", area.getText());
}
We are using Storm to process streaming data and store into HDFS. We have got everything to work but have one issue. I understand that we can specify the number of tuples after which the data gets flushed to HDFS using SyncPolicy, something like this below:
SyncPolicy syncPolicy = new CountSyncPolicy(Integer.parseInt(args[3]));
The question I have is can the data also be flushed after a timeout? For e.g. we have set the SyncPolicy above to 1000 tuples. If for whatever reason we get 995 tuples and then the data stops coming in for a while is there any way that storm can flush the 995 records to HDFS after a specified timeout (5 seconds)?
Thanks in advance for any help on this!
Shay
Yes, if you send a tick tuple to the HDFS bolt, it will cause the bolt to try to sync to the HDFS file system. All this happens in the HDFS bolt's execute function.
To configure tick tuples for your topology, in your topology config. In Java, to set that to every 300 seconds the code would look like:
Config topologyConfig = new Config();
topologyConfig.put(Config.TOPOLOGY_TICK_TUPLE_FREQ_SECS, 300);
StormSubmitter.submitTopology("mytopology", topologyConfig, builder.createTopology());
You'll have to adjust that last line depending on your circumstances.
There is an alternative solution for this problem,
First, lets clarify about sync policy, If your sync policy is 1000 ,then HdfsBolt only sync the data from 1000 tuple by calling hsync() method in execute() means it only clears the buffer by pushing data to disk, but for faster write disk may uses its cache and not writing to file directly.
The data is written to the file only when the size of data matches your rotation policy that need to specify at the time of bolt creation.
FileRotationPolicy rotationPolicy = new FileSizeRotationPolicy(100.0f, Units.KB);
So for flushing the record the to file after timeout, Seperate your tick tuple from normal tuples in excecute method and calculate the time difference of both tuple, If the diff is greater than timeout period then write the data to file.
By handling tick tuple differently you can also avoid the tick tuple frequency written to your file.
See the below code for better understanding:
public class CustomHdfsBolt1 extends AbstractHdfsBolt {
private static final Logger LOG = LoggerFactory.getLogger(CustomHdfsBolt1.class);
private transient FSDataOutputStream out;
private RecordFormat format;
private long offset = 0L;
private int tickTupleCount = 0;
private String type;
private long normalTupleTime;
private long tickTupleTime;
public CustomHdfsBolt1() {
}
public CustomHdfsBolt1(String type) {
this.type = type;
}
public CustomHdfsBolt1 withFsUrl(String fsUrl) {
this.fsUrl = fsUrl;
return this;
}
public CustomHdfsBolt1 withConfigKey(String configKey) {
this.configKey = configKey;
return this;
}
public CustomHdfsBolt1 withFileNameFormat(FileNameFormat fileNameFormat) {
this.fileNameFormat = fileNameFormat;
return this;
}
public CustomHdfsBolt1 withRecordFormat(RecordFormat format) {
this.format = format;
return this;
}
public CustomHdfsBolt1 withSyncPolicy(SyncPolicy syncPolicy) {
this.syncPolicy = syncPolicy;
return this;
}
public CustomHdfsBolt1 withRotationPolicy(FileRotationPolicy rotationPolicy) {
this.rotationPolicy = rotationPolicy;
return this;
}
public CustomHdfsBolt1 addRotationAction(RotationAction action) {
this.rotationActions.add(action);
return this;
}
protected static boolean isTickTuple(Tuple tuple) {
return tuple.getSourceComponent().equals(Constants.SYSTEM_COMPONENT_ID)
&& tuple.getSourceStreamId().equals(Constants.SYSTEM_TICK_STREAM_ID);
}
public void execute(Tuple tuple) {
try {
if (isTickTuple(tuple)) {
tickTupleTime = Calendar.getInstance().getTimeInMillis();
long timeDiff = normalTupleTime - tickTupleTime;
long diffInSeconds = TimeUnit.MILLISECONDS.toSeconds(timeDiff);
if (diffInSeconds > 5) { // specify the value you want.
this.rotateWithOutFileSize(tuple);
}
} else {
normalTupleTime = Calendar.getInstance().getTimeInMillis();
this.rotateWithFileSize(tuple);
}
} catch (IOException var6) {
LOG.warn("write/sync failed.", var6);
this.collector.fail(tuple);
}
}
public void rotateWithFileSize(Tuple tuple) throws IOException {
syncHdfs(tuple);
this.collector.ack(tuple);
if (this.rotationPolicy.mark(tuple, this.offset)) {
this.rotateOutputFile();
this.offset = 0L;
this.rotationPolicy.reset();
}
}
public void rotateWithOutFileSize(Tuple tuple) throws IOException {
syncHdfs(tuple);
this.collector.ack(tuple);
this.rotateOutputFile();
this.offset = 0L;
this.rotationPolicy.reset();
}
public void syncHdfs(Tuple tuple) throws IOException {
byte[] e = this.format.format(tuple);
synchronized (this.writeLock) {
this.out.write(e);
this.offset += (long) e.length;
if (this.syncPolicy.mark(tuple, this.offset)) {
if (this.out instanceof HdfsDataOutputStream) {
((HdfsDataOutputStream) this.out).hsync(EnumSet.of(SyncFlag.UPDATE_LENGTH));
} else {
this.out.hsync();
}
this.syncPolicy.reset();
}
}
}
public void closeOutputFile() throws IOException {
this.out.close();
}
public void doPrepare(Map conf, TopologyContext topologyContext, OutputCollector collector) throws IOException {
LOG.info("Preparing HDFS Bolt...");
this.fs = FileSystem.get(URI.create(this.fsUrl), this.hdfsConfig);
this.tickTupleCount = 0;
this.normalTupleTime = 0;
this.tickTupleTime = 0;
}
public Path createOutputFile() throws IOException {
Path path = new Path(this.fileNameFormat.getPath(),
this.fileNameFormat.getName((long) this.rotation, System.currentTimeMillis()));
this.out = this.fs.create(path);
return path;
}
}
You can directly use this class in your project.
Thanks,
I have a piece of code that does pull with rebase:
private void pullWithRebase(Git git) throws GitAPIException {
git.checkout().setName("master").call();
List<Ref> branches = git.branchList().setListMode(ListBranchCommand.ListMode.ALL).call();
String remoteMasterBranchName = "refs/remotes/origin/master";
for (Ref ref : branches) {
if (remoteMasterBranchName.equals(ref.getName())) {
PullResult result = git.pull().setRemoteBranchName("master").setRebase(true).call();
return;
}
}
}
However it doesn't work if any conflicts occur while merging. If they do occur, I want to accept mine
I ended up just merging two branches and directly resolving any conflicts by modifying files.
private static final String CONFLICT_HEAD_MARKER = "<<<<<<<";
private static final String CONFLICT_BORDER_MARKER = "=======";
private static final String CONFLICT_UPSTREAM_MARKER = ">>>>>>>";
private boolean acceptHead;
public void resolve(File file) throws IOException {
File temp = new File(file.getParent(), "temp" + System.currentTimeMillis());
try(BufferedReader reader = new BufferedReader(new FileReader(file));
BufferedWriter writer = new BufferedWriter(new FileWriter(temp))) {
String currentLine;
boolean removePartition = false;
while((currentLine = reader.readLine()) != null) {
if (currentLine.contains(CONFLICT_HEAD_MARKER)) {
removePartition = !acceptHead;
continue;
} else if (currentLine.contains(CONFLICT_BORDER_MARKER)) {
removePartition = acceptHead;
continue;
} else if (currentLine.contains(CONFLICT_UPSTREAM_MARKER)) {
removePartition = false;
continue;
}
if (!removePartition) {
writer.write(currentLine + System.getProperty("line.separator"));
}
}
}
FileUtils.forceDelete(file);
FileUtils.moveFile(temp, file);
}
I have written the following code and keep running into this error:
Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 0
at yournamep3.Yournamep3test.main(Yournamep3test.java:23)
import java.io.File;
import java.io.IOException;
import java.io.PrintWriter;
public class Yournamep3test {
public static void main(String[] args) {
// Check if target file exists
File targetFile = new File(args[0]);
try {
PrintWriter out = new PrintWriter(targetFile);
out.write("\r\nStringed musical Instrument program");
for (int arrayIndex = 0; arrayIndex < 10; arrayIndex++) {
out.write("\r\n\r\n");
out.write("\r\nCreating new Stringed Musical Instrument object now..............");
Yournamep3 violinInstrument = new Yournamep3();
violinInstrument.setNameOfInstrument("Violin # " + (arrayIndex+1));
out.write("\r\nCreated instrument with name - "
+ violinInstrument.getNameOfInstrument());
int num = violinInstrument.getNumberOfStrings();
out.write("\r\nNumber of strings in instrument is " + num);
out.write("\r\nNames of String are ");
String strings[] = violinInstrument.getStringNames();
for (int counter = 0; counter < num; counter++) {
out.write("\r\n" + strings[counter]);
}
out.write("\r\nIs the Instrument playing - "
+ violinInstrument.isPlaying());
out.write("\r\nIs the Instrument tuned - "
+ violinInstrument.isTuned());
out.write("\r\nTuning now.........");
violinInstrument.setTuned(true);
out.write("\r\nIs the Instrument tuned - "
+ violinInstrument.isTuned());
out.write("\r\nCalling the Instrument play method now..");
violinInstrument.startPlayInstrument();
out.write("\r\nIs the Instrument playing - "
+ violinInstrument.isPlaying());
out.write("\r\nStopping playing of instrument..............");
violinInstrument.stopPlayInstrument();
out.write("\r\nIs the Instrument playing - "
+ violinInstrument.isPlaying());
}
out.close();
} catch (IOException e) {
}
}
}
I think the issue is with line 23. Any advice would be appreciated, thanks.
This is the other part of the code yournamep3
public class Yournamep3 {
//fields to determine if the instrument is isTuned,
private boolean isTuned;
//and if the instrument is currently isPlaying.
private boolean isPlaying;
private String name;
private int numberOfStrings = 4; // number of strings
private String nameofStringsInInstrument[] = {"E", "C", "D", "A"}; //an array of string names
//A constructor method that set the isTuned and currently isPlaying fields to false.
public Yournamep3() {
this.isTuned = false;
this.isPlaying = false;
}
/**
* #return the name
*/
public String getNameOfInstrument() {
return name;
}
/**
* #param name the name to set
*/
public void setNameOfInstrument(String nameOfInstrument) {
this.name = nameOfInstrument;
}
// Other methods
public boolean isPlaying() {
return isPlaying;
}
public void setPlaying(boolean playing) {
this.isPlaying = playing;
}
public boolean isTuned() {
return isTuned;
}
public void setTuned(boolean isTuned) {
this.isTuned = isTuned;
}
public void startPlayInstrument() {
System.out.println("The Instrument is now Playing.");
isPlaying = true;
}
public void stopPlayInstrument() {
System.out.println("The Instrument is not Playing anymore.");
isPlaying = false;
}
public void startTuneInstrument() {
System.out.println("The Instrument is Tuned.");
isTuned = true;
}
public void stopTuneInstrument() {
System.out.println("The Instrument is not Tuned.");
isTuned = false;
}
public int getNumberOfStrings() {
return this.numberOfStrings ;
}
public String[] getStringNames() {
return nameofStringsInInstrument;
}
}
I would look at your getStringNames() method for your violinInstrument. It seems to me that it isn't populating your String array properly, or the getNumberOfStrings() method does not give the right number of strings. If you put the code for that up, I can help a bit more.
Line 23 appears to be
Yournamep3 violinInstrument = new Yournamep3();
If that's the case you should check the constructor for Yournamemp3
Since Line 23 is
File targetFile = new File(args [0]);
It indicates that your args object is empty. ArrayIndexOutOfBoundException is thrown to indicate that an array has been accessed with an illegal index. 0 is an illegal index.
I am having some troubles running an Xquery with Saxon9HE, which has a reference to an external module.
I would like Saxon to resolve the module with a relative path rather absolute.
the module declaration
module namespace common = "http://my-xquery-utils";
from the main xquery
import module namespace common = "http://my-xquery-utils" at "/home/myself/common.xquery";
from my java code
public class SaxonInvocator {
private static Processor proc = null;
private static XQueryEvaluator xqe = null;
private static DocumentBuilder db = null;
private static StaticQueryContext ctx = null;
/**
* Utility for debug, should not be called outside your IDE
*
* #param args xml, xqFile, xqParameter
*/
public static void main(String[] args) {
XmlObject instance = null;
try {
instance = XmlObject.Factory.parse(new File(args[0]));
} catch (XmlException ex) {
Logger.getLogger(SaxonInvocator.class.getName()).log(Level.SEVERE, null, ex);
} catch (IOException ex){
Logger.getLogger(SaxonInvocator.class.getName()).log(Level.SEVERE, null, ex);
}
System.out.print(transform(instance, args[1], args[2]));
}
public static String transform(XmlObject input, String xqFile, String xqParameter) {
String result = null;
try {
proc = new Processor(false);
proc.getUnderlyingConfiguration().getOptimizer().setOptimizationLevel(0);
ctx = proc.getUnderlyingConfiguration().newStaticQueryContext();
ctx.setModuleURIResolver(new ModuleURIResolver() {
#Override
public StreamSource[] resolve(String moduleURI, String baseURI, String[] locations) throws XPathException {
StreamSource[] modules = new StreamSource[locations.length];
for (int i = 0; i < locations.length; i++) {
modules[i] = new StreamSource(getResourceAsStream(locations[i]));
}
return modules;
}
});
db = proc.newDocumentBuilder();
XQueryCompiler comp = proc.newXQueryCompiler();
XQueryExecutable exp = comp.compile(getResourceAsStream(xqFile));
xqe = exp.load();
ByteArrayInputStream bais = new ByteArrayInputStream(input.xmlText().getBytes("UTF-8"));
StreamSource ss = new StreamSource(bais);
XdmNode node = db.build(ss);
xqe.setExternalVariable(
new QName(xqParameter), node);
result = xqe.evaluate().toString();
} catch (SaxonApiException e) {
e.printStackTrace();
} catch (UnsupportedEncodingException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
}
return result;
}
public static InputStream getResourceAsStream(String resource) {
InputStream stream = SaxonInvocator.class.getResourceAsStream("/" + resource);
if (stream == null) {
stream = SaxonInvocator.class.getResourceAsStream(resource);
}
if (stream == null) {
stream = SaxonInvocator.class.getResourceAsStream("my/project/" + resource);
}
if (stream == null) {
stream = SaxonInvocator.class.getResourceAsStream("/my/project/" + resource);
}
return stream;
}
}
If a change it into a relative path like
import module namespace common = "http://my-xquery-utils" at "common.xquery";
I get
Error on line 22 column 1
XQST0059: java.io.FileNotFoundException
I am not sure how the ModuleURIResolver should be used.
Saxon questions are best asked on the Saxon forum at http://saxonica.plan.io - questions asked here will probably be noticed eventually but sometimes, like this time, they aren't our first priority.
The basic answer is that for the relative URI to resolve, the base URI needs to be known, which means that you need to ensure that the baseURI property in the XQueryCompiler is set. This happens automatically if you compile the query from a File, but not if you compile it from an InputStream.
If you don't know a suitable base URI to set, the alternative is to write a ModuleURIResolver, which could for example fetch the module by making another call on getResourceAsStream().